Wall clock time and date at job start Sat Apr 11 2020 06:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37981 * 120.07312 * 2 1 4 4 C 1.38335 * 120.14560 * 180.02562 * 3 2 1 5 5 C 1.38379 * 120.29493 * 359.97438 * 4 3 2 6 6 C 1.37940 * 120.14166 * 359.97438 * 5 4 3 7 7 C 1.39555 * 120.07515 * 180.27202 * 2 1 3 8 8 C 1.47849 * 120.14478 * 359.97438 * 7 2 1 9 9 O 1.21554 * 119.99758 * 6.75768 * 8 7 2 10 10 N 1.34777 * 119.99885 * 186.76469 * 8 7 2 11 11 C 1.46501 * 119.99898 * 179.97438 * 10 8 7 12 12 C 1.50692 * 109.47197 * 179.97438 * 11 10 8 13 13 C 1.40078 * 126.12991 * 259.69268 * 12 11 10 14 14 N 1.31009 * 108.25878 * 179.97438 * 13 12 11 15 15 N 1.39750 * 108.17263 * 0.52821 * 14 13 12 16 16 C 1.34643 * 126.12591 * 80.00084 * 12 11 10 17 17 C 1.51039 * 127.90534 * 359.45033 * 16 12 11 18 18 N 1.47504 * 106.99946 * 169.56666 * 17 16 12 19 19 C 1.36929 * 121.01132 * 222.97232 * 18 17 16 20 20 H 1.08004 * 120.00228 * 152.58602 * 19 18 17 21 21 C 1.38806 * 120.00345 * 332.58368 * 19 18 17 22 22 N 1.31624 * 119.99922 * 349.80552 * 21 19 18 23 23 Si 1.86803 * 120.00385 * 169.80373 * 21 19 18 24 24 H 1.48504 * 109.46893 * 94.99077 * 23 21 19 25 25 H 1.48497 * 109.47364 * 214.99471 * 23 21 19 26 26 H 1.48494 * 109.46943 * 334.99762 * 23 21 19 27 27 C 1.47090 * 117.97463 * 42.97095 * 18 17 16 28 28 C 1.46559 * 127.32374 * 179.23416 * 15 14 13 29 29 H 1.09004 * 109.46528 * 96.57462 * 1 2 3 30 30 H 1.08993 * 109.47104 * 216.57005 * 1 2 3 31 31 H 1.09000 * 109.47173 * 336.57435 * 1 2 3 32 32 H 1.08001 * 119.92620 * 0.02562 * 3 2 1 33 33 H 1.08005 * 119.85559 * 179.97438 * 4 3 2 34 34 H 1.07993 * 119.93285 * 180.02562 * 5 4 3 35 35 H 1.08005 * 120.07461 * 180.02562 * 6 5 4 36 36 H 0.96996 * 120.00364 * 359.97438 * 10 8 7 37 37 H 1.08996 * 109.47272 * 300.00299 * 11 10 8 38 38 H 1.09005 * 109.46707 * 60.00188 * 11 10 8 39 39 H 1.08005 * 125.86794 * 0.08694 * 13 12 11 40 40 H 1.09004 * 109.94570 * 288.93537 * 17 16 12 41 41 H 1.08997 * 109.95233 * 50.18943 * 17 16 12 42 42 H 0.96999 * 120.00349 * 180.02562 * 22 21 19 43 43 H 1.09002 * 109.51220 * 176.52010 * 27 18 17 44 44 H 1.09001 * 109.51138 * 56.37330 * 27 18 17 45 45 H 1.08998 * 109.50799 * 281.40296 * 28 15 14 46 46 H 1.09001 * 109.50310 * 41.53377 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1941 0.0000 4 6 3.5818 1.1958 -0.0005 5 6 4.2813 0.0019 -0.0005 6 6 3.6023 -1.1988 0.0005 7 6 2.2064 -1.2076 -0.0057 8 6 1.4720 -2.4909 -0.0113 9 8 0.2628 -2.4986 -0.1347 10 7 2.1434 -3.6520 0.1207 11 6 1.4157 -4.9235 0.1158 12 6 2.3909 -6.0610 0.2769 13 6 2.8849 -6.8769 -0.7490 14 7 3.7066 -7.7494 -0.2199 15 7 3.7523 -7.5248 1.1587 16 6 2.9390 -6.4790 1.4335 17 6 2.7248 -5.9160 2.8186 18 7 3.3368 -6.8639 3.7688 19 6 2.6995 -7.2086 4.9306 20 1 2.8898 -8.1689 5.3866 21 6 1.8087 -6.3237 5.5225 22 7 1.7247 -5.0845 5.0869 23 14 0.7291 -6.8915 6.9373 24 1 1.3799 -6.5450 8.2264 25 1 -0.5919 -6.2186 6.8530 26 1 0.5414 -8.3624 6.8573 27 6 4.6525 -7.4276 3.4301 28 6 4.5263 -8.2702 2.1553 29 1 -0.3632 -0.1177 -1.0210 30 1 -0.3633 -0.8253 0.6122 31 1 -0.3633 0.9430 0.4086 32 1 1.6584 2.1294 0.0004 33 1 4.1183 2.1332 -0.0010 34 1 5.3612 0.0101 -0.0005 35 1 4.1494 -2.1300 0.0009 36 1 3.1084 -3.6459 0.2190 37 1 0.7020 -4.9369 0.9395 38 1 0.8827 -5.0334 -0.8286 39 1 2.6332 -6.7989 -1.7964 40 1 3.2068 -4.9419 2.9027 41 1 1.6580 -5.8229 3.0214 42 1 1.1025 -4.4660 5.5007 43 1 5.0006 -8.0572 4.2490 44 1 5.3637 -6.6183 3.2645 45 1 4.0182 -9.2068 2.3847 46 1 5.5201 -8.4817 1.7605 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001069850957.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:39 Heat of formation + Delta-G solvation = 94.735765 kcal Electronic energy + Delta-G solvation = -29379.555662 eV Core-core repulsion = 25464.470030 eV Total energy + Delta-G solvation = -3915.085631 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.01378 -40.15563 -38.15572 -36.31097 -34.93908 -33.09361 -32.52886 -31.74829 -30.86495 -30.21224 -28.74876 -27.03078 -26.04181 -24.93578 -23.63912 -23.27233 -21.81057 -21.45615 -20.32789 -20.08609 -18.48138 -17.66977 -16.72752 -16.15741 -16.02653 -15.59202 -15.28442 -15.15942 -14.84578 -14.66349 -14.53980 -13.89710 -13.73063 -13.53802 -13.37357 -13.23154 -13.16917 -13.11069 -12.51646 -12.46674 -12.04211 -11.97370 -11.75368 -11.69061 -11.60124 -11.28891 -11.13230 -10.99929 -10.89776 -10.73307 -10.21531 -10.18795 -10.11370 -9.47579 -9.07133 -8.92393 -8.84265 -8.60831 -8.55583 -7.94159 -7.04724 -6.02157 -3.49392 0.87276 1.29115 2.41104 2.91942 3.00410 3.03139 3.27689 3.35622 3.37003 3.73494 3.88443 4.30157 4.71407 4.78306 4.81225 4.94917 4.98971 5.07232 5.19603 5.24346 5.37024 5.39072 5.51111 5.54666 5.60067 5.62155 5.70674 5.78894 5.85180 5.86438 5.89746 6.13108 6.21082 6.22270 6.28471 6.34985 6.37057 6.41050 6.53360 6.58045 6.75447 6.84748 6.91453 7.07561 7.15724 7.56613 7.59713 7.79372 8.10506 8.22492 8.46146 8.91666 9.52690 10.06737 11.08601 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009651 B = 0.003633 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2900.499661 B = 7705.326812 C = 9123.562065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.024 4.024 3 C -0.135 4.135 4 C -0.095 4.095 5 C -0.137 4.137 6 C -0.080 4.080 7 C -0.133 4.133 8 C 0.555 3.445 9 O -0.537 6.537 10 N -0.713 5.713 11 C 0.211 3.789 12 C -0.290 4.290 13 C 0.056 3.944 14 N -0.318 5.318 15 N -0.358 5.358 16 C 0.120 3.880 17 C 0.232 3.768 18 N -0.596 5.596 19 C -0.265 4.265 20 H 0.072 0.928 21 C 0.011 3.989 22 N -0.904 5.904 23 Si 0.910 3.090 24 H -0.285 1.285 25 H -0.287 1.287 26 H -0.278 1.278 27 C 0.129 3.871 28 C 0.113 3.887 29 H 0.073 0.927 30 H 0.098 0.902 31 H 0.054 0.946 32 H 0.126 0.874 33 H 0.124 0.876 34 H 0.126 0.874 35 H 0.126 0.874 36 H 0.398 0.602 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.175 0.825 40 H 0.057 0.943 41 H 0.109 0.891 42 H 0.260 0.740 43 H 0.084 0.916 44 H 0.036 0.964 45 H 0.076 0.924 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.655 8.238 -10.689 14.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.025 4.025 3 C -0.153 4.153 4 C -0.113 4.113 5 C -0.155 4.155 6 C -0.099 4.099 7 C -0.136 4.136 8 C 0.343 3.657 9 O -0.417 6.417 10 N -0.364 5.364 11 C 0.087 3.913 12 C -0.302 4.302 13 C -0.130 4.130 14 N -0.138 5.138 15 N -0.139 5.139 16 C -0.012 4.012 17 C 0.105 3.895 18 N -0.319 5.319 19 C -0.394 4.394 20 H 0.090 0.910 21 C -0.189 4.189 22 N -0.547 5.547 23 Si 0.739 3.261 24 H -0.212 1.212 25 H -0.213 1.213 26 H -0.203 1.203 27 C 0.000 4.000 28 C -0.010 4.010 29 H 0.092 0.908 30 H 0.116 0.884 31 H 0.073 0.927 32 H 0.144 0.856 33 H 0.142 0.858 34 H 0.144 0.856 35 H 0.144 0.856 36 H 0.233 0.767 37 H 0.093 0.907 38 H 0.088 0.912 39 H 0.192 0.808 40 H 0.074 0.926 41 H 0.127 0.873 42 H 0.070 0.930 43 H 0.103 0.897 44 H 0.054 0.946 45 H 0.094 0.906 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 4.547 7.214 -10.800 13.760 hybrid contribution -0.387 0.338 0.876 1.015 sum 4.161 7.552 -9.924 13.147 Atomic orbital electron populations 1.21078 0.90026 1.03026 1.03546 1.20074 0.96945 0.91493 0.93945 1.21046 0.94256 0.97462 1.02499 1.21305 0.94282 0.98182 0.97527 1.21058 1.00105 0.92235 1.02067 1.21335 0.93082 0.98630 0.96806 1.19886 0.93593 0.93494 1.06674 1.18212 0.87078 0.83640 0.76781 1.90706 1.13653 1.87182 1.50114 1.46148 1.11114 1.05763 1.73375 1.19322 0.91662 0.78341 1.01950 1.19433 1.12000 1.06454 0.92328 1.23679 0.95893 0.94032 0.99432 1.77170 1.23486 1.24502 0.88667 1.48503 1.35355 1.25273 1.04774 1.22633 0.90606 0.88627 0.99316 1.19935 1.01205 0.90868 0.77504 1.44164 1.15246 1.51770 1.20696 1.19149 1.21760 0.98860 0.99649 0.91027 1.25131 1.00779 0.94735 0.98217 1.69894 1.38244 1.03330 1.43246 0.86166 0.79924 0.78202 0.81815 1.21165 1.21259 1.20280 1.21298 0.89342 0.96090 0.93224 1.22567 0.94555 0.95962 0.87932 0.90806 0.88390 0.92672 0.85595 0.85831 0.85616 0.85626 0.76703 0.90689 0.91215 0.80753 0.92572 0.87308 0.93001 0.89732 0.94618 0.90597 0.90229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.54 8.71 36.01 0.31 -1.22 16 2 C -0.02 -0.31 5.91 -104.23 -0.62 -0.92 16 3 C -0.13 -1.45 9.66 -39.64 -0.38 -1.83 16 4 C -0.09 -0.92 10.04 -39.49 -0.40 -1.32 16 5 C -0.14 -1.40 10.03 -39.64 -0.40 -1.80 16 6 C -0.08 -0.95 9.52 -39.18 -0.37 -1.32 16 7 C -0.13 -1.86 5.87 -104.97 -0.62 -2.48 16 8 C 0.56 8.85 7.70 -12.33 -0.09 8.76 16 9 O -0.54 -9.81 13.36 5.32 0.07 -9.74 16 10 N -0.71 -10.68 5.50 -62.43 -0.34 -11.03 16 11 C 0.21 3.39 5.95 -5.20 -0.03 3.36 16 12 C -0.29 -4.99 5.46 -105.21 -0.57 -5.56 16 13 C 0.06 0.91 11.97 -17.21 -0.21 0.71 16 14 N -0.32 -5.83 12.61 30.70 0.39 -5.45 16 15 N -0.36 -6.81 4.03 -56.89 -0.23 -7.04 16 16 C 0.12 2.35 6.71 -82.17 -0.55 1.80 16 17 C 0.23 5.19 5.06 -4.48 -0.02 5.16 16 18 N -0.60 -13.79 3.00 -172.92 -0.52 -14.31 16 19 C -0.27 -6.75 9.66 -15.06 -0.15 -6.90 16 20 H 0.07 1.77 7.85 -52.48 -0.41 1.36 16 21 C 0.01 0.29 5.11 -17.43 -0.09 0.20 16 22 N -0.90 -24.51 11.00 55.49 0.61 -23.90 16 23 Si 0.91 20.72 29.57 -169.99 -5.03 15.69 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 25 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 26 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 27 C 0.13 2.39 6.50 -3.55 -0.02 2.37 16 28 C 0.11 1.92 7.45 -3.84 -0.03 1.89 16 29 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 30 H 0.10 1.50 5.89 -51.93 -0.31 1.20 16 31 H 0.05 0.58 8.04 -51.93 -0.42 0.16 16 32 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 33 H 0.12 0.87 8.06 -52.48 -0.42 0.44 16 34 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 35 H 0.13 1.30 6.46 -52.48 -0.34 0.96 16 36 H 0.40 5.43 6.54 -40.82 -0.27 5.17 16 37 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 38 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 39 H 0.18 2.20 8.06 -52.48 -0.42 1.78 16 40 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 41 H 0.11 2.76 6.54 -51.93 -0.34 2.42 16 42 H 0.26 6.91 8.31 -40.82 -0.34 6.58 16 43 H 0.08 1.44 7.94 -51.93 -0.41 1.03 16 44 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 46 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 LS Contribution 378.50 15.07 5.70 5.70 Total: -1.00 -30.41 378.50 -9.86 -40.27 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: -6.28 Total: 8.91 kcal Atomic # 6 Polarization: 5.12 SS G_CDS: -4.24 Total: 0.89 kcal Atomic # 7 Polarization: -61.63 SS G_CDS: -0.09 Total: -61.72 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: 0.07 Total: -9.74 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.03 Total: 15.69 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -30.41 -9.86 -40.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001069850957.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.005 kcal (2) G-P(sol) polarization free energy of solvation -30.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds