Wall clock time and date at job start Sat Apr 11 2020 06:05:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.38371 * 119.92901 * 2 1 4 4 C 1.38342 * 120.29454 * 179.76303 * 3 2 1 5 5 C 1.37982 * 120.13892 * 0.51228 * 4 3 2 6 6 C 1.39554 * 119.85344 * 359.74184 * 5 4 3 7 7 C 1.47848 * 120.14084 * 179.97438 * 6 5 4 8 8 O 1.21552 * 119.99835 * 180.02562 * 7 6 5 9 9 N 1.34769 * 120.00406 * 0.02905 * 7 6 5 10 10 C 1.46501 * 120.00630 * 179.97438 * 9 7 6 11 11 C 1.50700 * 109.47493 * 179.97438 * 10 9 7 12 12 C 1.40063 * 126.12131 * 259.68656 * 11 10 9 13 13 N 1.31011 * 108.25287 * 179.85320 * 12 11 10 14 14 N 1.39747 * 108.17589 * 0.60929 * 13 12 11 15 15 C 1.34638 * 126.12234 * 79.99899 * 11 10 9 16 16 C 1.51036 * 127.91438 * 359.65080 * 15 11 10 17 17 N 1.47503 * 107.00027 * 169.52865 * 16 15 11 18 18 C 1.36944 * 121.01131 * 222.90465 * 17 16 15 19 19 H 1.07993 * 120.00081 * 155.91987 * 18 17 16 20 20 C 1.38813 * 119.99823 * 335.91503 * 18 17 16 21 21 N 1.31621 * 120.00210 * 344.45362 * 20 18 17 22 22 Si 1.86804 * 120.00073 * 164.45620 * 20 18 17 23 23 H 1.48501 * 109.46926 * 359.97438 * 22 20 18 24 24 H 1.48495 * 109.47007 * 120.00117 * 22 20 18 25 25 H 1.48496 * 109.46940 * 240.00266 * 22 20 18 26 26 C 1.47083 * 117.98023 * 42.92748 * 17 16 15 27 27 C 1.46555 * 127.32313 * 179.18603 * 14 13 12 28 28 C 1.37940 * 119.92380 * 180.27398 * 2 1 3 29 29 H 1.08995 * 109.47019 * 269.72852 * 1 2 3 30 30 H 1.09001 * 109.46704 * 29.72570 * 1 2 3 31 31 H 1.09000 * 109.47022 * 149.72182 * 1 2 3 32 32 H 1.08004 * 119.85781 * 359.97438 * 3 2 1 33 33 H 1.07995 * 119.93020 * 180.25619 * 4 3 2 34 34 H 1.07997 * 120.06867 * 179.72472 * 5 4 3 35 35 H 0.97002 * 120.00179 * 359.97438 * 9 7 6 36 36 H 1.09011 * 109.46590 * 300.00331 * 10 9 7 37 37 H 1.08998 * 109.46643 * 59.99314 * 10 9 7 38 38 H 1.07997 * 125.87492 * 0.04320 * 12 11 10 39 39 H 1.08996 * 109.94889 * 288.90010 * 16 15 11 40 40 H 1.09000 * 109.94744 * 50.16027 * 16 15 11 41 41 H 0.96995 * 120.00136 * 179.97438 * 21 20 18 42 42 H 1.08996 * 109.51304 * 56.33834 * 26 17 16 43 43 H 1.08998 * 109.51937 * 176.49821 * 26 17 16 44 44 H 1.09003 * 109.50825 * 41.59347 * 27 14 13 45 45 H 1.08997 * 109.50955 * 281.45788 * 27 14 13 46 46 H 1.08005 * 120.07661 * 359.95768 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1975 1.1992 0.0000 4 6 3.5809 1.2080 0.0049 5 6 4.2813 0.0192 -0.0008 6 6 3.5911 -1.1937 -0.0061 7 6 4.3352 -2.4713 -0.0128 8 8 3.7314 -3.5262 -0.0179 9 7 5.6829 -2.4662 -0.0132 10 6 6.4203 -3.7321 -0.0192 11 6 7.9009 -3.4511 -0.0190 12 6 8.7491 -3.4913 -1.1329 13 7 9.9604 -3.1868 -0.7375 14 7 9.9243 -2.9572 0.6405 15 6 8.6462 -3.1223 1.0529 16 6 8.1907 -2.9512 2.4828 17 7 9.4056 -2.8436 3.3124 18 6 9.5036 -3.5027 4.5088 19 1 10.4749 -3.7454 4.9137 20 6 8.3543 -3.8588 5.2012 21 7 7.1995 -3.3123 4.8849 22 14 8.4468 -5.1137 6.5819 23 1 9.8496 -5.5749 6.7384 24 1 7.9856 -4.4908 7.8485 25 1 7.5785 -6.2733 6.2557 26 6 10.5084 -2.0066 2.8159 27 6 11.0484 -2.6050 1.5124 28 6 2.1952 -1.1955 -0.0057 29 1 -0.3633 -0.0049 1.0276 30 1 -0.3633 0.8925 -0.5096 31 1 -0.3633 -0.8875 -0.5181 32 1 1.6540 2.1325 -0.0004 33 1 4.1137 2.1474 0.0091 34 1 5.3612 0.0274 -0.0014 35 1 6.1648 -1.6244 -0.0094 36 1 6.1593 -4.3088 0.8683 37 1 6.1588 -4.3006 -0.9117 38 1 8.4546 -3.7291 -2.1444 39 1 7.5945 -2.0437 2.5771 40 1 7.6045 -3.8165 2.7924 41 1 6.3964 -3.5614 5.3684 42 1 10.1433 -0.9967 2.6291 43 1 11.3048 -1.9749 3.5594 44 1 11.6825 -1.8736 1.0113 45 1 11.6299 -3.4994 1.7359 46 1 1.6552 -2.1308 -0.0095 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001069852191.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:42 Heat of formation + Delta-G solvation = 89.818524 kcal Electronic energy + Delta-G solvation = -29062.017432 eV Core-core repulsion = 25146.718574 eV Total energy + Delta-G solvation = -3915.298859 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.02022 -40.03384 -38.33113 -36.32596 -34.83247 -33.23666 -32.80864 -31.43689 -30.98380 -30.23154 -28.82590 -27.05762 -26.11748 -25.10112 -23.66771 -23.10607 -21.89455 -21.76636 -20.19504 -19.94974 -18.48210 -17.60222 -16.73593 -16.28063 -16.16343 -15.71051 -15.29592 -15.00293 -14.76924 -14.66905 -14.40803 -13.90848 -13.86046 -13.67570 -13.57314 -13.38944 -13.23459 -12.99468 -12.68434 -12.48607 -12.39203 -12.00901 -11.72819 -11.68323 -11.60075 -11.31814 -11.15971 -11.00176 -10.89498 -10.73749 -10.20821 -10.18781 -10.09377 -9.79522 -9.06279 -8.92501 -8.85252 -8.68780 -8.56845 -7.95354 -7.09761 -6.02308 -3.45319 0.84438 1.26351 2.40044 2.90770 2.98869 3.00132 3.28451 3.36800 3.38327 3.71620 3.88180 4.30670 4.64328 4.70680 4.78700 4.94060 5.04059 5.05220 5.15479 5.19630 5.22969 5.36171 5.43062 5.44512 5.53718 5.55686 5.59587 5.61957 5.70727 5.84400 5.84682 5.94260 6.12136 6.20565 6.26270 6.29112 6.35861 6.39844 6.41970 6.52721 6.68318 6.81599 6.89646 7.06708 7.13434 7.56049 7.59348 7.77473 8.08006 8.21609 8.43760 8.90859 9.53360 10.05700 11.08565 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009924 B = 0.003376 C = 0.002872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2820.652006 B = 8291.810349 C = 9746.297652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.098 4.098 3 C -0.100 4.100 4 C -0.124 4.124 5 C -0.090 4.090 6 C -0.123 4.123 7 C 0.556 3.444 8 O -0.543 6.543 9 N -0.712 5.712 10 C 0.210 3.790 11 C -0.289 4.289 12 C 0.057 3.943 13 N -0.318 5.318 14 N -0.358 5.358 15 C 0.120 3.880 16 C 0.231 3.769 17 N -0.596 5.596 18 C -0.264 4.264 19 H 0.074 0.926 20 C 0.009 3.991 21 N -0.902 5.902 22 Si 0.908 3.092 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.286 1.286 26 C 0.129 3.871 27 C 0.113 3.887 28 C -0.063 4.063 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.124 0.876 33 H 0.127 0.873 34 H 0.126 0.874 35 H 0.399 0.601 36 H 0.075 0.925 37 H 0.070 0.930 38 H 0.176 0.824 39 H 0.056 0.944 40 H 0.110 0.890 41 H 0.259 0.741 42 H 0.036 0.964 43 H 0.085 0.915 44 H 0.080 0.920 45 H 0.076 0.924 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.331 8.739 -10.845 15.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.098 4.098 3 C -0.119 4.119 4 C -0.142 4.142 5 C -0.108 4.108 6 C -0.126 4.126 7 C 0.342 3.658 8 O -0.422 6.422 9 N -0.363 5.363 10 C 0.086 3.914 11 C -0.302 4.302 12 C -0.130 4.130 13 N -0.138 5.138 14 N -0.139 5.139 15 C -0.012 4.012 16 C 0.104 3.896 17 N -0.319 5.319 18 C -0.393 4.393 19 H 0.092 0.908 20 C -0.191 4.191 21 N -0.546 5.546 22 Si 0.737 3.263 23 H -0.202 1.202 24 H -0.214 1.214 25 H -0.212 1.212 26 C 0.001 3.999 27 C -0.010 4.010 28 C -0.081 4.081 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.142 0.858 33 H 0.145 0.855 34 H 0.144 0.856 35 H 0.234 0.766 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.193 0.807 39 H 0.074 0.926 40 H 0.127 0.873 41 H 0.069 0.931 42 H 0.054 0.946 43 H 0.103 0.897 44 H 0.098 0.902 45 H 0.094 0.906 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -5.506 8.129 -11.005 14.748 hybrid contribution -0.371 -0.302 0.924 1.041 sum -5.876 7.827 -10.081 14.050 Atomic orbital electron populations 1.20792 0.90818 1.02825 1.02564 1.19893 0.96371 0.92859 1.00703 1.21206 0.94312 0.97558 0.98792 1.21079 0.94240 0.98032 1.00805 1.21343 0.99958 0.91862 0.97682 1.20021 0.94362 0.93157 1.05027 1.18231 0.82254 0.88667 0.76599 1.90752 1.68596 1.32478 1.50354 1.46130 1.05633 1.10405 1.74150 1.19339 0.85121 0.84633 1.02270 1.19422 0.96133 1.21772 0.92827 1.23677 0.90345 0.99861 0.99120 1.77173 1.21727 1.24168 0.90691 1.48505 1.07354 1.52991 1.05027 1.22591 0.84742 0.94690 0.99158 1.19925 0.88836 1.02653 0.78205 1.44212 1.13574 1.53508 1.20598 1.19196 0.93020 1.30764 0.96320 0.90816 1.25041 0.96052 0.99805 0.98179 1.69946 0.98990 1.42539 1.43086 0.86144 0.77749 0.81055 0.81333 1.20173 1.21439 1.21229 1.21273 0.93283 0.93248 0.92143 1.22556 0.86633 1.00922 0.90903 1.21160 0.92731 0.98324 0.95925 0.90988 0.91535 0.91328 0.85830 0.85472 0.85591 0.76623 0.90659 0.91162 0.80725 0.92596 0.87275 0.93064 0.94634 0.89710 0.90188 0.90574 0.84711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.89 10.01 36.01 0.36 -0.53 16 2 C -0.10 -1.04 5.87 -104.68 -0.61 -1.66 16 3 C -0.10 -0.97 9.69 -39.49 -0.38 -1.36 16 4 C -0.12 -1.25 10.03 -39.64 -0.40 -1.65 16 5 C -0.09 -1.06 9.54 -39.18 -0.37 -1.43 16 6 C -0.12 -1.71 5.87 -104.97 -0.62 -2.33 16 7 C 0.56 9.09 7.77 -12.33 -0.10 8.99 16 8 O -0.54 -10.56 16.35 5.32 0.09 -10.48 16 9 N -0.71 -10.81 5.50 -62.43 -0.34 -11.15 16 10 C 0.21 3.42 5.95 -5.19 -0.03 3.39 16 11 C -0.29 -5.00 5.46 -105.21 -0.57 -5.57 16 12 C 0.06 0.92 11.97 -17.22 -0.21 0.71 16 13 N -0.32 -5.81 12.61 30.69 0.39 -5.42 16 14 N -0.36 -6.79 4.03 -56.93 -0.23 -7.02 16 15 C 0.12 2.36 6.71 -82.17 -0.55 1.81 16 16 C 0.23 5.17 5.11 -4.48 -0.02 5.15 16 17 N -0.60 -13.78 3.01 -172.97 -0.52 -14.30 16 18 C -0.26 -6.73 9.67 -15.06 -0.15 -6.88 16 19 H 0.07 1.83 7.88 -52.49 -0.41 1.41 16 20 C 0.01 0.23 5.00 -17.43 -0.09 0.14 16 21 N -0.90 -24.58 11.07 55.49 0.61 -23.97 16 22 Si 0.91 20.82 29.58 -169.99 -5.03 15.79 16 23 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 24 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 26 C 0.13 2.38 6.49 -3.59 -0.02 2.36 16 27 C 0.11 1.91 7.44 -3.88 -0.03 1.88 16 28 C -0.06 -0.81 9.24 -39.19 -0.36 -1.17 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 31 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 32 H 0.12 0.88 8.06 -52.48 -0.42 0.46 16 33 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 34 H 0.13 1.32 6.41 -52.49 -0.34 0.98 16 35 H 0.40 5.44 6.50 -40.82 -0.27 5.17 16 36 H 0.08 1.40 8.14 -51.92 -0.42 0.97 16 37 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.18 2.21 8.06 -52.49 -0.42 1.78 16 39 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 40 H 0.11 2.77 6.46 -51.93 -0.34 2.44 16 41 H 0.26 6.92 8.31 -40.82 -0.34 6.59 16 42 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.08 1.44 7.94 -51.93 -0.41 1.03 16 44 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 45 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 46 H 0.14 1.76 7.65 -52.48 -0.40 1.36 16 LS Contribution 383.80 15.07 5.78 5.78 Total: -1.00 -31.19 383.80 -9.77 -40.96 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: -6.37 Total: 7.95 kcal Atomic # 6 Polarization: 6.01 SS G_CDS: -4.15 Total: 1.85 kcal Atomic # 7 Polarization: -61.78 SS G_CDS: -0.09 Total: -61.87 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: 0.09 Total: -10.48 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.03 Total: 15.79 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.19 -9.77 -40.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001069852191.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.779 kcal (2) G-P(sol) polarization free energy of solvation -31.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds