Wall clock time and date at job start Sat Apr 11 2020 06:05:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.38371 * 119.92901 * 2 1 4 4 C 1.38342 * 120.29454 * 179.76303 * 3 2 1 5 5 C 1.37982 * 120.13892 * 0.51228 * 4 3 2 6 6 C 1.39554 * 119.85344 * 359.74184 * 5 4 3 7 7 C 1.47848 * 120.14084 * 179.97438 * 6 5 4 8 8 O 1.21552 * 119.99835 * 180.02562 * 7 6 5 9 9 N 1.34769 * 120.00406 * 0.02905 * 7 6 5 10 10 C 1.46501 * 120.00630 * 179.97438 * 9 7 6 11 11 C 1.50700 * 109.47493 * 179.97438 * 10 9 7 12 12 C 1.40063 * 126.12131 * 259.68656 * 11 10 9 13 13 N 1.31011 * 108.25287 * 179.85320 * 12 11 10 14 14 N 1.39747 * 108.17589 * 0.60929 * 13 12 11 15 15 C 1.34638 * 126.12234 * 79.99899 * 11 10 9 16 16 C 1.51036 * 127.91438 * 359.65080 * 15 11 10 17 17 N 1.47503 * 107.00027 * 169.52865 * 16 15 11 18 18 C 1.36944 * 121.01131 * 222.90465 * 17 16 15 19 19 H 1.07993 * 120.00081 * 155.91987 * 18 17 16 20 20 C 1.38813 * 119.99823 * 335.91503 * 18 17 16 21 21 N 1.31621 * 120.00210 * 344.45362 * 20 18 17 22 22 Si 1.86804 * 120.00073 * 164.45620 * 20 18 17 23 23 H 1.48501 * 109.46926 * 359.97438 * 22 20 18 24 24 H 1.48495 * 109.47007 * 120.00117 * 22 20 18 25 25 H 1.48496 * 109.46940 * 240.00266 * 22 20 18 26 26 C 1.47083 * 117.98023 * 42.92748 * 17 16 15 27 27 C 1.46555 * 127.32313 * 179.18603 * 14 13 12 28 28 C 1.37940 * 119.92380 * 180.27398 * 2 1 3 29 29 H 1.08995 * 109.47019 * 269.72852 * 1 2 3 30 30 H 1.09001 * 109.46704 * 29.72570 * 1 2 3 31 31 H 1.09000 * 109.47022 * 149.72182 * 1 2 3 32 32 H 1.08004 * 119.85781 * 359.97438 * 3 2 1 33 33 H 1.07995 * 119.93020 * 180.25619 * 4 3 2 34 34 H 1.07997 * 120.06867 * 179.72472 * 5 4 3 35 35 H 0.97002 * 120.00179 * 359.97438 * 9 7 6 36 36 H 1.09011 * 109.46590 * 300.00331 * 10 9 7 37 37 H 1.08998 * 109.46643 * 59.99314 * 10 9 7 38 38 H 1.07997 * 125.87492 * 0.04320 * 12 11 10 39 39 H 1.08996 * 109.94889 * 288.90010 * 16 15 11 40 40 H 1.09000 * 109.94744 * 50.16027 * 16 15 11 41 41 H 0.96995 * 120.00136 * 179.97438 * 21 20 18 42 42 H 1.08996 * 109.51304 * 56.33834 * 26 17 16 43 43 H 1.08998 * 109.51937 * 176.49821 * 26 17 16 44 44 H 1.09003 * 109.50825 * 41.59347 * 27 14 13 45 45 H 1.08997 * 109.50955 * 281.45788 * 27 14 13 46 46 H 1.08005 * 120.07661 * 359.95768 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1975 1.1992 0.0000 4 6 3.5809 1.2080 0.0049 5 6 4.2813 0.0192 -0.0008 6 6 3.5911 -1.1937 -0.0061 7 6 4.3352 -2.4713 -0.0128 8 8 3.7314 -3.5262 -0.0179 9 7 5.6829 -2.4662 -0.0132 10 6 6.4203 -3.7321 -0.0192 11 6 7.9009 -3.4511 -0.0190 12 6 8.7491 -3.4913 -1.1329 13 7 9.9604 -3.1868 -0.7375 14 7 9.9243 -2.9572 0.6405 15 6 8.6462 -3.1223 1.0529 16 6 8.1907 -2.9512 2.4828 17 7 9.4056 -2.8436 3.3124 18 6 9.5036 -3.5027 4.5088 19 1 10.4749 -3.7454 4.9137 20 6 8.3543 -3.8588 5.2012 21 7 7.1995 -3.3123 4.8849 22 14 8.4468 -5.1137 6.5819 23 1 9.8496 -5.5749 6.7384 24 1 7.9856 -4.4908 7.8485 25 1 7.5785 -6.2733 6.2557 26 6 10.5084 -2.0066 2.8159 27 6 11.0484 -2.6050 1.5124 28 6 2.1952 -1.1955 -0.0057 29 1 -0.3633 -0.0049 1.0276 30 1 -0.3633 0.8925 -0.5096 31 1 -0.3633 -0.8875 -0.5181 32 1 1.6540 2.1325 -0.0004 33 1 4.1137 2.1474 0.0091 34 1 5.3612 0.0274 -0.0014 35 1 6.1648 -1.6244 -0.0094 36 1 6.1593 -4.3088 0.8683 37 1 6.1588 -4.3006 -0.9117 38 1 8.4546 -3.7291 -2.1444 39 1 7.5945 -2.0437 2.5771 40 1 7.6045 -3.8165 2.7924 41 1 6.3964 -3.5614 5.3684 42 1 10.1433 -0.9967 2.6291 43 1 11.3048 -1.9749 3.5594 44 1 11.6825 -1.8736 1.0113 45 1 11.6299 -3.4994 1.7359 46 1 1.6552 -2.1308 -0.0095 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001069852191.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:41 Heat of formation + Delta-G solvation = 71.267039 kcal Electronic energy + Delta-G solvation = -29062.821885 eV Core-core repulsion = 25146.718574 eV Total energy + Delta-G solvation = -3916.103312 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.46167 -41.14691 -39.40302 -37.98378 -36.22111 -34.70690 -33.88769 -32.86501 -32.09513 -31.81346 -30.25242 -28.01610 -27.65217 -26.51846 -25.21573 -24.33428 -23.29169 -22.76728 -21.62077 -21.15105 -20.00814 -18.75094 -18.55471 -17.59540 -17.38877 -16.84840 -16.74708 -16.46258 -16.17304 -15.76523 -15.60338 -15.48476 -15.19276 -14.99071 -14.76799 -14.63266 -14.57819 -14.12744 -13.97900 -13.88668 -13.36831 -13.13587 -13.04231 -12.99106 -12.83209 -12.77158 -12.64006 -12.51659 -12.33207 -12.05026 -11.98879 -11.89716 -11.64952 -11.10948 -10.80192 -10.19894 -10.08265 -9.86272 -9.65169 -9.42557 -8.96960 -8.00201 -5.43964 -0.11792 0.39780 0.90364 1.43624 1.47403 1.54680 1.57004 1.62874 1.86866 2.42988 2.45994 2.89036 3.19064 3.41590 3.58294 3.71263 3.81272 3.84022 3.97932 4.11779 4.17777 4.18470 4.22828 4.36244 4.39245 4.41700 4.44253 4.67450 4.76751 4.77090 4.84826 4.85970 4.89694 4.92176 5.00263 5.00892 5.21492 5.26688 5.33633 5.34825 5.41398 5.44052 5.57417 5.58833 5.73064 5.97870 6.07040 6.18720 6.52928 6.78195 6.97327 7.16961 7.64088 8.14994 9.09066 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009924 B = 0.003376 C = 0.002872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2820.652006 B = 8291.810349 C = 9746.297652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.101 4.101 3 C -0.093 4.093 4 C -0.123 4.123 5 C -0.097 4.097 6 C -0.148 4.148 7 C 0.552 3.448 8 O -0.584 6.584 9 N -0.704 5.704 10 C 0.216 3.784 11 C -0.276 4.276 12 C 0.068 3.932 13 N -0.324 5.324 14 N -0.366 5.366 15 C 0.097 3.903 16 C 0.250 3.750 17 N -0.616 5.616 18 C -0.266 4.266 19 H 0.081 0.919 20 C -0.043 4.043 21 N -0.931 5.931 22 Si 0.965 3.035 23 H -0.264 1.264 24 H -0.290 1.290 25 H -0.296 1.296 26 C 0.128 3.872 27 C 0.117 3.883 28 C -0.083 4.083 29 H 0.077 0.923 30 H 0.089 0.911 31 H 0.067 0.933 32 H 0.158 0.842 33 H 0.157 0.843 34 H 0.135 0.865 35 H 0.407 0.593 36 H 0.044 0.956 37 H 0.086 0.914 38 H 0.215 0.785 39 H 0.034 0.966 40 H 0.071 0.929 41 H 0.252 0.748 42 H 0.041 0.959 43 H 0.100 0.900 44 H 0.113 0.887 45 H 0.077 0.923 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.587 10.634 -12.231 17.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.101 4.101 3 C -0.111 4.111 4 C -0.140 4.140 5 C -0.115 4.115 6 C -0.151 4.151 7 C 0.341 3.659 8 O -0.466 6.466 9 N -0.355 5.355 10 C 0.092 3.908 11 C -0.288 4.288 12 C -0.118 4.118 13 N -0.144 5.144 14 N -0.147 5.147 15 C -0.035 4.035 16 C 0.123 3.877 17 N -0.339 5.339 18 C -0.395 4.395 19 H 0.098 0.902 20 C -0.239 4.239 21 N -0.577 5.577 22 Si 0.793 3.207 23 H -0.188 1.188 24 H -0.217 1.217 25 H -0.223 1.223 26 C 0.001 3.999 27 C -0.006 4.006 28 C -0.102 4.102 29 H 0.096 0.904 30 H 0.108 0.892 31 H 0.086 0.914 32 H 0.176 0.824 33 H 0.174 0.826 34 H 0.152 0.848 35 H 0.244 0.756 36 H 0.063 0.937 37 H 0.105 0.895 38 H 0.232 0.768 39 H 0.052 0.948 40 H 0.089 0.911 41 H 0.061 0.939 42 H 0.059 0.941 43 H 0.118 0.882 44 H 0.131 0.869 45 H 0.095 0.905 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -4.701 10.056 -12.400 16.643 hybrid contribution -0.599 -0.818 1.297 1.647 sum -5.300 9.238 -11.102 15.385 Atomic orbital electron populations 1.20855 0.88812 1.03995 1.03242 1.20229 0.97907 0.92303 0.99644 1.21653 0.94387 0.98434 0.96657 1.21468 0.94751 0.98382 0.99426 1.21511 1.00552 0.91766 0.97709 1.19934 0.94768 0.92627 1.07773 1.18716 0.82384 0.89279 0.75564 1.90713 1.69327 1.34127 1.52456 1.46008 1.05464 1.10356 1.73649 1.19203 0.84965 0.85087 1.01582 1.19499 0.96250 1.20311 0.92773 1.24242 0.89116 0.98205 1.00280 1.77169 1.22600 1.24568 0.90074 1.48693 1.07212 1.53243 1.05554 1.22195 0.86012 0.97125 0.98150 1.19333 0.88398 0.99955 0.80048 1.44443 1.14669 1.54518 1.20274 1.19531 0.93126 1.30135 0.96739 0.90179 1.25722 0.95978 1.01630 1.00555 1.70097 0.99288 1.44016 1.44276 0.85249 0.77951 0.78678 0.78830 1.18779 1.21663 1.22288 1.21447 0.92239 0.92826 0.93376 1.22555 0.86253 1.01740 0.90030 1.21236 0.92590 0.99057 0.97308 0.90432 0.89244 0.91357 0.82412 0.82550 0.84763 0.75649 0.93723 0.89543 0.76824 0.94816 0.91123 0.93922 0.94100 0.88170 0.86866 0.90475 0.86089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.56 10.01 71.24 0.71 -0.85 16 2 C -0.10 -2.02 5.87 -19.90 -0.12 -2.14 16 3 C -0.09 -1.55 9.69 22.33 0.22 -1.33 16 4 C -0.12 -2.19 10.03 22.23 0.22 -1.97 16 5 C -0.10 -2.22 9.54 22.53 0.21 -2.01 16 6 C -0.15 -4.26 5.87 -20.09 -0.12 -4.38 16 7 C 0.55 19.03 7.77 86.79 0.67 19.71 16 8 O -0.58 -24.25 16.35 -3.88 -0.06 -24.31 16 9 N -0.70 -22.13 5.50 -469.70 -2.58 -24.71 16 10 C 0.22 7.24 5.95 85.63 0.51 7.75 16 11 C -0.28 -9.43 5.46 -20.25 -0.11 -9.54 16 12 C 0.07 2.04 11.97 85.26 1.02 3.06 16 13 N -0.32 -11.08 12.61 -56.80 -0.72 -11.79 16 14 N -0.37 -13.37 4.03 -334.03 -1.35 -14.71 16 15 C 0.10 3.82 6.71 41.30 0.28 4.10 16 16 C 0.25 11.66 5.11 85.55 0.44 12.10 16 17 N -0.62 -28.80 3.01 -701.15 -2.11 -30.91 16 18 C -0.27 -13.67 9.67 84.03 0.81 -12.86 16 19 H 0.08 3.93 7.88 -2.91 -0.02 3.91 16 20 C -0.04 -2.29 5.00 84.86 0.42 -1.86 16 21 N -0.93 -52.98 11.07 21.65 0.24 -52.74 16 22 Si 0.96 43.68 29.58 68.60 2.03 45.71 16 23 H -0.26 -11.23 7.11 99.48 0.71 -10.53 16 24 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 25 H -0.30 -13.75 7.11 99.48 0.71 -13.04 16 26 C 0.13 4.59 6.49 86.36 0.56 5.15 16 27 C 0.12 3.70 7.44 86.46 0.64 4.34 16 28 C -0.08 -2.22 9.24 22.53 0.21 -2.01 16 29 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.09 0.84 8.08 -2.39 -0.02 0.82 16 31 H 0.07 0.95 8.08 -2.39 -0.02 0.93 16 32 H 0.16 1.54 8.06 -2.91 -0.02 1.52 16 33 H 0.16 1.86 8.06 -2.91 -0.02 1.84 16 34 H 0.13 2.73 6.41 -2.91 -0.02 2.71 16 35 H 0.41 11.30 6.50 -92.71 -0.60 10.69 16 36 H 0.04 1.78 8.14 -2.38 -0.02 1.76 16 37 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 38 H 0.22 4.58 8.06 -2.91 -0.02 4.56 16 39 H 0.03 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.07 3.83 6.46 -2.39 -0.02 3.81 16 41 H 0.25 14.12 8.31 -92.71 -0.77 13.35 16 42 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.10 3.24 7.94 -2.39 -0.02 3.22 16 44 H 0.11 2.85 8.14 -2.39 -0.02 2.83 16 45 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 46 H 0.12 3.44 7.65 -2.91 -0.02 3.42 16 Total: -1.00 -70.17 383.80 2.44 -67.73 By element: Atomic # 1 Polarization: 28.09 SS G_CDS: 0.40 Total: 28.49 kcal Atomic # 6 Polarization: 10.66 SS G_CDS: 6.59 Total: 17.25 kcal Atomic # 7 Polarization: -128.35 SS G_CDS: -6.52 Total: -134.87 kcal Atomic # 8 Polarization: -24.25 SS G_CDS: -0.06 Total: -24.31 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -70.17 2.44 -67.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001069852191.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.994 kcal (2) G-P(sol) polarization free energy of solvation -70.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds