Wall clock time and date at job start Sat Apr 11 2020 06:05:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38356 * 119.85212 * 2 1 4 4 C 1.37955 * 120.14328 * 180.02562 * 3 2 1 5 5 C 1.39580 * 119.85312 * 359.96966 * 4 3 2 6 6 C 1.47846 * 120.14580 * 179.97438 * 5 4 3 7 7 O 1.21553 * 119.99953 * 359.97438 * 6 5 4 8 8 N 1.34778 * 119.99980 * 180.02562 * 6 5 4 9 9 C 1.46500 * 119.99833 * 179.97438 * 8 6 5 10 10 C 1.50700 * 109.47061 * 180.02562 * 9 8 6 11 11 C 1.40069 * 126.12178 * 259.83372 * 10 9 8 12 12 N 1.31019 * 108.25289 * 180.08704 * 11 10 9 13 13 N 1.39743 * 108.17826 * 0.20821 * 12 11 10 14 14 C 1.34641 * 126.12787 * 79.99913 * 10 9 8 15 15 C 1.51041 * 127.90555 * 359.46018 * 14 10 9 16 16 N 1.47501 * 106.99531 * 169.61570 * 15 14 10 17 17 C 1.36940 * 121.01867 * 222.94692 * 16 15 14 18 18 H 1.07996 * 120.00116 * 155.91313 * 17 16 15 19 19 C 1.38817 * 119.99940 * 335.92281 * 17 16 15 20 20 N 1.31618 * 119.99543 * 344.44803 * 19 17 16 21 21 Si 1.86791 * 119.99929 * 164.44800 * 19 17 16 22 22 H 1.48499 * 109.47602 * 59.99785 * 21 19 17 23 23 H 1.48501 * 109.47240 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47326 * 299.99528 * 21 19 17 25 25 C 1.47090 * 117.97113 * 42.97266 * 16 15 14 26 26 C 1.46554 * 127.32724 * 179.49347 * 13 12 11 27 27 C 1.39576 * 119.70812 * 0.25721 * 5 4 3 28 28 C 1.37953 * 119.85371 * 359.51620 * 27 5 4 29 29 H 1.09005 * 109.46733 * 90.00363 * 1 2 3 30 30 H 1.08998 * 109.47526 * 209.99951 * 1 2 3 31 31 H 1.09001 * 109.47109 * 330.00980 * 1 2 3 32 32 H 1.08001 * 119.93091 * 359.97147 * 3 2 1 33 33 H 1.08004 * 120.07742 * 179.97438 * 4 3 2 34 34 H 0.97000 * 120.00225 * 0.02562 * 8 6 5 35 35 H 1.09003 * 109.47298 * 60.00072 * 9 8 6 36 36 H 1.09000 * 109.47231 * 300.00407 * 9 8 6 37 37 H 1.07999 * 125.87690 * 0.14608 * 11 10 9 38 38 H 1.08996 * 109.95269 * 288.99625 * 15 14 10 39 39 H 1.09007 * 109.94813 * 50.25556 * 15 14 10 40 40 H 0.97003 * 119.99183 * 180.02562 * 20 19 17 41 41 H 1.08993 * 109.51262 * 176.49912 * 25 16 15 42 42 H 1.08996 * 109.50983 * 56.34701 * 25 16 15 43 43 H 1.08996 * 109.50519 * 281.45495 * 26 13 12 44 44 H 1.08998 * 109.50199 * 41.58851 * 26 13 12 45 45 H 1.08004 * 120.07083 * 179.72732 * 27 5 4 46 46 H 1.08005 * 119.92662 * 180.23435 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1957 1.2000 0.0000 4 6 3.5753 1.2070 -0.0005 5 6 4.2762 0.0000 -0.0004 6 6 5.7547 -0.0001 -0.0016 7 8 6.3625 1.0526 -0.0031 8 7 6.4285 -1.1673 -0.0020 9 6 7.8935 -1.1673 -0.0037 10 6 8.3959 -2.5881 -0.0045 11 6 8.8607 -3.3002 1.1086 12 7 9.2107 -4.4989 0.7119 13 7 8.9847 -4.5860 -0.6643 14 6 8.4812 -3.3994 -1.0757 15 6 8.0928 -3.0952 -2.5033 16 7 8.6063 -4.2003 -3.3345 17 6 9.2165 -3.9551 -4.5357 18 1 9.9128 -4.6726 -4.9440 19 6 8.9403 -2.7843 -5.2283 20 7 7.8886 -2.0616 -4.9060 21 14 10.0612 -2.2346 -6.6178 22 1 10.0889 -3.2781 -7.6739 23 1 9.5511 -0.9635 -7.1919 24 1 11.4343 -2.0251 -6.0927 25 6 8.4424 -5.5737 -2.8341 26 6 9.2402 -5.7363 -1.5358 27 6 3.5752 -1.2070 -0.0052 28 6 2.1957 -1.2000 0.0001 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3633 0.8901 0.5137 32 1 1.6522 2.1332 -0.0005 33 1 4.1118 2.1443 -0.0010 34 1 5.9435 -2.0074 -0.0019 35 1 8.2579 -0.6532 0.8857 36 1 8.2559 -0.6537 -0.8942 37 1 8.9194 -2.9260 2.1199 38 1 7.0078 -3.0380 -2.5895 39 1 8.5421 -2.1533 -2.8183 40 1 7.6954 -1.2436 -5.3903 41 1 8.8112 -6.2789 -3.5788 42 1 7.3874 -5.7668 -2.6397 43 1 10.3041 -5.7889 -1.7665 44 1 8.9308 -6.6513 -1.0306 45 1 4.1117 -2.1444 -0.0096 46 1 1.6521 -2.1332 0.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001069881783.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:45 Heat of formation + Delta-G solvation = 89.739576 kcal Electronic energy + Delta-G solvation = -29034.287765 eV Core-core repulsion = 25118.985483 eV Total energy + Delta-G solvation = -3915.302282 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.01583 -40.01835 -38.35609 -36.32222 -34.81705 -33.18038 -32.83858 -31.37916 -30.92612 -30.23044 -28.98406 -27.46948 -26.00308 -24.79348 -23.52186 -22.73957 -22.29462 -21.74106 -20.19805 -20.09330 -18.54766 -17.81140 -16.73155 -16.17658 -16.01202 -15.35043 -15.29998 -14.98902 -14.80097 -14.74301 -14.47984 -13.93207 -13.87996 -13.66101 -13.64035 -13.43436 -13.23370 -13.06645 -12.69839 -12.51209 -12.41357 -11.98555 -11.72326 -11.69141 -11.60592 -11.31119 -11.10712 -10.98679 -10.87580 -10.75118 -10.22119 -10.20215 -10.09285 -9.78916 -9.07920 -8.92444 -8.89406 -8.63617 -8.56169 -7.94957 -7.09536 -6.01823 -3.44856 0.82556 1.29481 2.40416 2.91688 2.98523 3.00027 3.29268 3.37033 3.37171 3.73421 3.89195 4.31171 4.62296 4.64971 4.82680 4.94272 4.98212 5.05212 5.12766 5.19952 5.26454 5.35669 5.36499 5.49719 5.52945 5.54456 5.58393 5.60308 5.70362 5.84637 5.85597 5.90875 6.11805 6.20733 6.22365 6.31635 6.38019 6.40073 6.40750 6.53132 6.69262 6.81664 6.89871 7.07053 7.13667 7.56077 7.59146 7.78479 8.08563 8.21945 8.45009 8.91208 9.53711 10.06145 11.09010 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009693 B = 0.003342 C = 0.002904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2887.879313 B = 8375.478677 C = 9639.107135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.067 4.067 3 C -0.132 4.132 4 C -0.057 4.057 5 C -0.133 4.133 6 C 0.556 3.444 7 O -0.544 6.544 8 N -0.713 5.713 9 C 0.210 3.790 10 C -0.289 4.289 11 C 0.057 3.943 12 N -0.318 5.318 13 N -0.358 5.358 14 C 0.120 3.880 15 C 0.231 3.769 16 N -0.596 5.596 17 C -0.266 4.266 18 H 0.073 0.927 19 C 0.009 3.991 20 N -0.902 5.902 21 Si 0.909 3.091 22 H -0.281 1.281 23 H -0.288 1.288 24 H -0.282 1.282 25 C 0.129 3.871 26 C 0.113 3.887 27 C -0.079 4.079 28 C -0.129 4.129 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.127 0.873 33 H 0.136 0.864 34 H 0.398 0.602 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.176 0.824 38 H 0.056 0.944 39 H 0.109 0.891 40 H 0.260 0.740 41 H 0.085 0.915 42 H 0.036 0.964 43 H 0.076 0.924 44 H 0.080 0.920 45 H 0.127 0.873 46 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.222 0.325 10.857 15.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.067 4.067 3 C -0.150 4.150 4 C -0.076 4.076 5 C -0.136 4.136 6 C 0.343 3.657 7 O -0.423 6.423 8 N -0.364 5.364 9 C 0.086 3.914 10 C -0.301 4.301 11 C -0.130 4.130 12 N -0.138 5.138 13 N -0.139 5.139 14 C -0.012 4.012 15 C 0.104 3.896 16 N -0.319 5.319 17 C -0.395 4.395 18 H 0.091 0.909 19 C -0.190 4.190 20 N -0.546 5.546 21 Si 0.738 3.262 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.208 1.208 25 C 0.001 3.999 26 C -0.010 4.010 27 C -0.098 4.098 28 C -0.147 4.147 29 H 0.092 0.908 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.145 0.855 33 H 0.153 0.847 34 H 0.233 0.767 35 H 0.088 0.912 36 H 0.093 0.907 37 H 0.193 0.807 38 H 0.074 0.926 39 H 0.127 0.873 40 H 0.070 0.930 41 H 0.103 0.897 42 H 0.054 0.946 43 H 0.094 0.906 44 H 0.098 0.902 45 H 0.145 0.855 46 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -10.287 -0.073 11.006 15.066 hybrid contribution 0.119 0.517 -0.928 1.069 sum -10.168 0.444 10.079 14.324 Atomic orbital electron populations 1.20850 0.91050 1.02879 1.02614 1.20121 0.96234 0.93234 0.97151 1.21007 0.93882 0.97721 1.02356 1.21271 0.93764 0.97857 0.94711 1.20022 0.93208 0.94373 1.06008 1.18235 0.86932 0.83984 0.76543 1.90751 1.69870 1.31220 1.50428 1.46131 1.07901 1.08122 1.74219 1.19335 0.78020 0.91736 1.02262 1.19427 1.19490 0.98386 0.92846 1.23680 0.98879 0.91346 0.99109 1.77173 1.25363 1.20480 0.90755 1.48501 1.48601 1.11604 1.05168 1.22595 0.93593 0.85854 0.99151 1.19926 0.97684 0.93749 0.78251 1.44194 1.68811 0.98741 1.20106 1.19112 1.18774 1.05588 0.96007 0.90913 1.25038 0.96602 0.99204 0.98180 1.69930 1.24903 1.16697 1.43029 0.86270 0.80358 0.78041 0.81515 1.20711 1.21326 1.20810 1.21270 0.96807 0.89685 0.92178 1.22553 1.02101 0.85438 0.90919 1.21340 0.94498 0.97222 0.96726 1.20969 0.93891 0.97780 1.02075 0.90816 0.91374 0.91402 0.85546 0.84655 0.76652 0.91169 0.90678 0.80728 0.92599 0.87275 0.92953 0.89715 0.94642 0.90586 0.90192 0.85542 0.85548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.81 10.01 36.01 0.36 -0.45 16 2 C -0.07 -0.66 5.89 -104.53 -0.62 -1.27 16 3 C -0.13 -1.38 9.68 -39.64 -0.38 -1.76 16 4 C -0.06 -0.73 9.60 -39.18 -0.38 -1.11 16 5 C -0.13 -1.85 5.87 -104.97 -0.62 -2.47 16 6 C 0.56 9.09 7.77 -12.33 -0.10 8.99 16 7 O -0.54 -10.58 16.35 5.32 0.09 -10.49 16 8 N -0.71 -10.82 5.50 -62.43 -0.34 -11.17 16 9 C 0.21 3.43 5.95 -5.19 -0.03 3.40 16 10 C -0.29 -5.00 5.46 -105.21 -0.57 -5.58 16 11 C 0.06 0.92 11.97 -17.21 -0.21 0.71 16 12 N -0.32 -5.82 12.61 30.70 0.39 -5.44 16 13 N -0.36 -6.80 4.03 -56.94 -0.23 -7.03 16 14 C 0.12 2.36 6.71 -82.17 -0.55 1.81 16 15 C 0.23 5.17 5.11 -4.48 -0.02 5.15 16 16 N -0.60 -13.79 3.01 -172.97 -0.52 -14.31 16 17 C -0.27 -6.79 9.67 -15.06 -0.15 -6.93 16 18 H 0.07 1.80 7.88 -52.49 -0.41 1.38 16 19 C 0.01 0.24 5.00 -17.43 -0.09 0.16 16 20 N -0.90 -24.58 11.07 55.49 0.61 -23.97 16 21 Si 0.91 20.84 29.58 -169.99 -5.03 15.81 16 22 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 23 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 C 0.13 2.39 6.49 -3.59 -0.02 2.36 16 26 C 0.11 1.91 7.44 -3.88 -0.03 1.89 16 27 C -0.08 -0.94 9.54 -39.19 -0.37 -1.31 16 28 C -0.13 -1.33 9.68 -39.64 -0.38 -1.72 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16 31 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 32 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 33 H 0.14 1.73 7.65 -52.48 -0.40 1.32 16 34 H 0.40 5.44 6.50 -40.82 -0.27 5.17 16 35 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 37 H 0.18 2.21 8.06 -52.49 -0.42 1.79 16 38 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 39 H 0.11 2.77 6.46 -51.92 -0.34 2.44 16 40 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 41 H 0.08 1.44 7.94 -51.93 -0.41 1.03 16 42 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 44 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 45 H 0.13 1.32 6.41 -52.48 -0.34 0.99 16 46 H 0.13 1.03 8.06 -52.48 -0.42 0.60 16 LS Contribution 383.79 15.07 5.78 5.78 Total: -1.00 -31.20 383.79 -9.77 -40.97 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -6.37 Total: 7.97 kcal Atomic # 6 Polarization: 6.03 SS G_CDS: -4.16 Total: 1.88 kcal Atomic # 7 Polarization: -61.82 SS G_CDS: -0.09 Total: -61.92 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: 0.09 Total: -10.49 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.03 Total: 15.81 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.20 -9.77 -40.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001069881783.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.708 kcal (2) G-P(sol) polarization free energy of solvation -31.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds