Wall clock time and date at job start Sat Apr 11 2020 06:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.40158 * 120.29455 * 2 1 4 4 C 1.35188 * 120.31900 * 180.02562 * 3 2 1 5 5 N 1.36245 * 120.70380 * 0.02562 * 4 3 2 6 6 N 1.40016 * 132.00909 * 180.02562 * 5 4 3 7 7 C 1.30737 * 109.60145 * 179.97438 * 6 5 4 8 8 C 1.40553 * 108.74821 * 359.77855 * 7 6 5 9 9 C 1.46568 * 126.58303 * 180.29242 * 8 7 6 10 10 O 1.21715 * 119.99971 * 180.08127 * 9 8 7 11 11 N 1.34771 * 119.99813 * 0.07960 * 9 8 7 12 12 C 1.47395 * 135.85574 * 359.63422 * 11 9 8 13 13 C 1.52074 * 87.41316 * 154.38607 * 12 11 9 14 14 C 1.47390 * 135.85227 * 179.97438 * 11 9 8 15 15 C 1.53511 * 117.21214 * 267.28301 * 13 12 11 16 16 C 1.54636 * 102.70014 * 262.92992 * 15 13 12 17 17 N 1.47149 * 107.37589 * 339.38141 * 16 15 13 18 18 C 1.36938 * 125.57644 * 179.04505 * 17 16 15 19 19 H 1.08003 * 119.99671 * 180.02562 * 18 17 16 20 20 C 1.38809 * 120.00126 * 0.02562 * 18 17 16 21 21 N 1.31613 * 120.00058 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 119.99930 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.46969 * 60.00043 * 22 20 18 24 24 H 1.48491 * 109.47139 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.46650 * 300.00302 * 22 20 18 26 26 C 1.47754 * 108.84030 * 359.09490 * 17 16 15 27 27 C 1.36572 * 120.08174 * 359.97438 * 5 4 3 28 28 C 1.36444 * 120.29447 * 180.02562 * 2 1 3 29 29 H 1.09007 * 109.46972 * 269.97383 * 1 2 3 30 30 H 1.08998 * 109.47484 * 29.97290 * 1 2 3 31 31 H 1.08996 * 109.47272 * 149.97260 * 1 2 3 32 32 H 1.08001 * 119.83818 * 0.05448 * 3 2 1 33 33 H 1.08002 * 119.64793 * 180.02562 * 4 3 2 34 34 H 1.08006 * 125.62397 * 180.02562 * 7 6 5 35 35 H 1.09000 * 113.54132 * 269.00062 * 12 11 9 36 36 H 1.09002 * 113.54082 * 39.67470 * 12 11 9 37 37 H 1.08999 * 113.54748 * 320.32973 * 14 11 9 38 38 H 1.09009 * 113.54346 * 90.93461 * 14 11 9 39 39 H 1.09005 * 110.76317 * 21.22737 * 15 13 12 40 40 H 1.08992 * 110.76705 * 144.62660 * 15 13 12 41 41 H 1.08992 * 109.86632 * 98.83461 * 16 15 13 42 42 H 1.09002 * 109.86106 * 219.93603 * 16 15 13 43 43 H 0.96999 * 119.99970 * 179.97438 * 21 20 18 44 44 H 1.09003 * 110.39982 * 263.49933 * 26 17 16 45 45 H 1.08997 * 110.40695 * 141.07944 * 26 17 16 46 46 H 1.08005 * 120.37469 * 359.95329 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2140 1.2102 0.0000 4 6 3.5659 1.2108 -0.0005 5 7 4.2621 0.0396 -0.0016 6 7 5.6352 -0.2343 -0.0018 7 6 5.8244 -1.5279 -0.0024 8 6 4.5728 -2.1675 0.0025 9 6 4.3306 -3.6130 0.0096 10 8 3.1904 -4.0390 0.0119 11 7 5.3703 -4.4705 0.0136 12 6 6.8394 -4.3515 0.0061 13 6 6.8845 -5.7159 0.6761 14 6 5.5331 -5.9353 0.0211 15 6 6.9276 -5.7436 2.2103 16 6 8.4368 -5.9063 2.5051 17 7 9.0654 -6.4512 1.2914 18 6 10.3988 -6.7227 1.1380 19 1 10.7645 -7.1226 0.2037 20 6 11.2805 -6.4840 2.1832 21 7 10.8348 -5.9971 3.3219 22 14 13.0996 -6.8537 1.9737 23 1 13.6433 -6.0444 0.8537 24 1 13.8212 -6.5143 3.2263 25 1 13.2799 -8.2971 1.6745 26 6 8.0226 -6.6563 0.2649 27 6 3.5960 -1.1527 -0.0016 28 6 2.1953 -1.1781 -0.0005 29 1 -0.3633 -0.0005 1.0277 30 1 -0.3634 0.8902 -0.5134 31 1 -0.3633 -0.8897 -0.5142 32 1 1.6762 2.1467 0.0009 33 1 4.0997 2.1496 -0.0001 34 1 6.7841 -2.0233 -0.0024 35 1 7.2705 -4.3435 -0.9950 36 1 7.2140 -3.5435 0.6346 37 1 4.8171 -6.4497 0.6620 38 1 5.5969 -6.3715 -0.9759 39 1 6.5517 -4.8079 2.6244 40 1 6.3645 -6.5926 2.5975 41 1 8.8739 -4.9371 2.7455 42 1 8.5794 -6.5955 3.3375 43 1 11.4509 -5.8307 4.0524 44 1 7.6814 -7.6915 0.2715 45 1 8.4014 -6.3864 -0.7208 46 1 1.6662 -2.1197 -0.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072829758.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:54 Heat of formation + Delta-G solvation = 142.875031 kcal Electronic energy + Delta-G solvation = -29035.887659 eV Core-core repulsion = 25122.889503 eV Total energy + Delta-G solvation = -3912.998156 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.37076 -40.50914 -38.18253 -37.68325 -35.59980 -33.84410 -32.19364 -31.60137 -30.26845 -29.23820 -28.60915 -27.35680 -26.06809 -25.65257 -24.04648 -23.62056 -22.26589 -22.00604 -20.26998 -19.39562 -18.39532 -17.76790 -17.08413 -16.66140 -16.30669 -16.06543 -15.80401 -15.29133 -15.23626 -14.82430 -14.69635 -14.28479 -13.97756 -13.87490 -13.58078 -13.37056 -13.04474 -12.87012 -12.45293 -12.27658 -12.23786 -12.10247 -11.88351 -11.79112 -11.74610 -11.06258 -10.98085 -10.88848 -10.62116 -10.56925 -10.37383 -10.14417 -10.11943 -9.82007 -9.64623 -9.60702 -9.51965 -8.58874 -8.50319 -7.82800 -6.82988 -5.70392 -3.04083 0.35189 0.72538 1.90571 2.06666 2.89736 3.02720 3.41295 3.45781 3.46978 3.60213 3.93644 4.17191 4.24790 4.47765 4.51114 4.64031 4.74682 4.83692 4.93749 5.05054 5.06790 5.14676 5.18078 5.29504 5.35592 5.49986 5.50562 5.58141 5.63439 5.69629 5.70824 5.84861 5.85637 5.94507 6.02950 6.10336 6.18068 6.25401 6.31730 6.49369 6.54019 6.56454 6.69506 6.73405 7.24590 7.56394 7.63342 7.83390 7.96015 8.25799 8.42208 9.22348 9.82495 10.48227 11.41059 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.020945 B = 0.002467 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.486385 B =11346.027918 C =12152.849274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.046 4.046 3 C -0.160 4.160 4 C 0.114 3.886 5 N -0.271 5.271 6 N -0.319 5.319 7 C 0.119 3.881 8 C -0.305 4.305 9 C 0.627 3.373 10 O -0.561 6.561 11 N -0.640 5.640 12 C 0.114 3.886 13 C -0.104 4.104 14 C 0.123 3.877 15 C -0.117 4.117 16 C 0.180 3.820 17 N -0.605 5.605 18 C -0.228 4.228 19 H 0.078 0.922 20 C -0.008 4.008 21 N -0.922 5.922 22 Si 0.911 3.089 23 H -0.285 1.285 24 H -0.291 1.291 25 H -0.285 1.285 26 C 0.153 3.847 27 C 0.165 3.835 28 C -0.110 4.110 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.157 0.843 33 H 0.172 0.828 34 H 0.203 0.797 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.084 0.916 39 H 0.061 0.939 40 H 0.063 0.937 41 H 0.046 0.954 42 H 0.043 0.957 43 H 0.253 0.747 44 H 0.027 0.973 45 H 0.043 0.957 46 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.235 13.764 -7.423 24.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.051 4.051 3 C -0.181 4.181 4 C -0.012 4.012 5 N -0.035 5.035 6 N -0.140 5.140 7 C -0.061 4.061 8 C -0.319 4.319 9 C 0.419 3.581 10 O -0.442 6.442 11 N -0.373 5.373 12 C -0.009 4.009 13 C -0.106 4.106 14 C 0.001 3.999 15 C -0.155 4.155 16 C 0.055 3.945 17 N -0.331 5.331 18 C -0.356 4.356 19 H 0.095 0.905 20 C -0.204 4.204 21 N -0.569 5.569 22 Si 0.742 3.258 23 H -0.212 1.212 24 H -0.217 1.217 25 H -0.212 1.212 26 C 0.026 3.974 27 C 0.044 3.956 28 C -0.129 4.129 29 H 0.098 0.902 30 H 0.092 0.908 31 H 0.094 0.906 32 H 0.175 0.825 33 H 0.190 0.810 34 H 0.219 0.781 35 H 0.107 0.893 36 H 0.098 0.902 37 H 0.096 0.904 38 H 0.102 0.898 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.065 0.935 42 H 0.062 0.938 43 H 0.063 0.937 44 H 0.045 0.955 45 H 0.061 0.939 46 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -19.074 14.832 -7.276 25.234 hybrid contribution 0.852 -0.821 -0.047 1.184 sum -18.222 14.011 -7.323 24.124 Atomic orbital electron populations 1.20837 0.89459 1.03666 1.03228 1.20053 0.97372 0.92138 0.95568 1.20820 0.91829 0.99625 1.05857 1.21560 0.92035 0.88408 0.99215 1.46121 1.06540 1.05260 1.45541 1.77643 0.87784 1.17159 1.31406 1.24508 0.99279 0.90262 0.92031 1.19619 0.91364 0.93185 1.27727 1.16263 0.82988 0.83424 0.75410 1.90733 1.21124 1.78971 1.53358 1.49473 1.06585 1.08152 1.73139 1.23016 0.78653 0.98488 1.00697 1.22173 0.94951 0.95833 0.97613 1.22733 0.95775 0.80820 1.00587 1.22467 1.00645 1.00825 0.91593 1.21223 0.85169 0.98799 0.89311 1.44538 1.02858 1.75600 1.10139 1.18994 0.81441 1.36480 0.98710 0.90456 1.24792 0.98125 1.01394 0.96098 1.69948 1.33279 1.50022 1.03682 0.86212 0.84869 0.78001 0.76740 1.21185 1.21679 1.21211 1.21143 0.87815 0.95126 0.93268 1.19264 0.92938 0.85699 0.97691 1.20736 0.89940 1.00200 1.02029 0.90157 0.90792 0.90576 0.82538 0.81034 0.78074 0.89338 0.90163 0.90436 0.89835 0.92074 0.91784 0.93536 0.93842 0.93713 0.95547 0.93911 0.82252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.58 10.03 36.00 0.36 -0.22 16 2 C -0.05 -0.37 5.89 -104.55 -0.62 -0.99 16 3 C -0.16 -1.05 9.67 -39.95 -0.39 -1.44 16 4 C 0.11 0.97 11.17 -16.68 -0.19 0.79 16 5 N -0.27 -3.44 3.86 -10.54 -0.04 -3.48 16 6 N -0.32 -4.58 12.57 30.75 0.39 -4.20 16 7 C 0.12 1.69 11.09 -17.15 -0.19 1.50 16 8 C -0.30 -4.66 6.17 -104.68 -0.65 -5.31 16 9 C 0.63 10.52 8.03 -12.90 -0.10 10.41 16 10 O -0.56 -10.63 16.48 5.18 0.09 -10.55 16 11 N -0.64 -9.84 3.70 -187.30 -0.69 -10.53 16 12 C 0.11 1.66 6.41 -7.33 -0.05 1.61 16 13 C -0.10 -1.69 1.06 -155.23 -0.16 -1.85 16 14 C 0.12 1.79 8.02 -7.48 -0.06 1.73 16 15 C -0.12 -2.13 6.40 -25.61 -0.16 -2.30 16 16 C 0.18 4.20 5.39 -2.83 -0.02 4.19 16 17 N -0.60 -14.68 3.41 -170.54 -0.58 -15.26 16 18 C -0.23 -6.13 10.28 -15.06 -0.15 -6.28 16 19 H 0.08 2.00 7.83 -52.48 -0.41 1.58 16 20 C -0.01 -0.22 5.49 -17.43 -0.10 -0.31 16 21 N -0.92 -26.61 10.30 55.49 0.57 -26.04 16 22 Si 0.91 21.75 29.55 -169.99 -5.02 16.72 16 23 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 25 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 26 C 0.15 2.90 6.70 -3.22 -0.02 2.88 16 27 C 0.16 2.29 6.76 -84.07 -0.57 1.72 16 28 C -0.11 -1.26 9.38 -39.53 -0.37 -1.63 16 29 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.24 8.10 -51.93 -0.42 -0.18 16 31 H 0.08 0.39 8.09 -51.93 -0.42 -0.03 16 32 H 0.16 0.46 8.06 -52.49 -0.42 0.03 16 33 H 0.17 0.95 8.06 -52.49 -0.42 0.52 16 34 H 0.20 2.51 5.17 -52.48 -0.27 2.24 16 35 H 0.09 1.16 8.06 -51.93 -0.42 0.74 16 36 H 0.08 1.17 6.22 -51.93 -0.32 0.84 16 37 H 0.08 1.13 8.13 -51.93 -0.42 0.71 16 38 H 0.08 1.07 8.14 -51.92 -0.42 0.64 16 39 H 0.06 1.08 8.07 -51.93 -0.42 0.66 16 40 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.05 1.21 7.38 -51.93 -0.38 0.82 16 42 H 0.04 1.14 7.49 -51.93 -0.39 0.75 16 43 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 44 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.04 0.77 8.00 -51.93 -0.42 0.35 16 46 H 0.16 1.93 7.12 -52.48 -0.37 1.55 16 LS Contribution 375.79 15.07 5.66 5.66 Total: -1.00 -34.29 375.79 -9.40 -43.69 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -6.34 Total: -0.53 kcal Atomic # 6 Polarization: 7.94 SS G_CDS: -3.43 Total: 4.51 kcal Atomic # 7 Polarization: -59.15 SS G_CDS: -0.36 Total: -59.51 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: 0.09 Total: -10.55 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.29 -9.40 -43.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072829758.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.566 kcal (2) G-P(sol) polarization free energy of solvation -34.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 152.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 142.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds