Wall clock time and date at job start Sat Apr 11 2020 06:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.40158 * 120.29455 * 2 1 4 4 C 1.35188 * 120.31900 * 180.02562 * 3 2 1 5 5 N 1.36245 * 120.70380 * 0.02562 * 4 3 2 6 6 N 1.40016 * 132.00909 * 180.02562 * 5 4 3 7 7 C 1.30737 * 109.60145 * 179.97438 * 6 5 4 8 8 C 1.40553 * 108.74821 * 359.77855 * 7 6 5 9 9 C 1.46568 * 126.58303 * 180.29242 * 8 7 6 10 10 O 1.21715 * 119.99971 * 180.08127 * 9 8 7 11 11 N 1.34771 * 119.99813 * 0.07960 * 9 8 7 12 12 C 1.47395 * 135.85574 * 359.63422 * 11 9 8 13 13 C 1.52074 * 87.41316 * 154.38607 * 12 11 9 14 14 C 1.47390 * 135.85227 * 179.97438 * 11 9 8 15 15 C 1.53511 * 117.21214 * 267.28301 * 13 12 11 16 16 C 1.54636 * 102.70014 * 262.92992 * 15 13 12 17 17 N 1.47149 * 107.37589 * 339.38141 * 16 15 13 18 18 C 1.36938 * 125.57644 * 179.04505 * 17 16 15 19 19 H 1.08003 * 119.99671 * 180.02562 * 18 17 16 20 20 C 1.38809 * 120.00126 * 0.02562 * 18 17 16 21 21 N 1.31613 * 120.00058 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 119.99930 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.46969 * 60.00043 * 22 20 18 24 24 H 1.48491 * 109.47139 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.46650 * 300.00302 * 22 20 18 26 26 C 1.47754 * 108.84030 * 359.09490 * 17 16 15 27 27 C 1.36572 * 120.08174 * 359.97438 * 5 4 3 28 28 C 1.36444 * 120.29447 * 180.02562 * 2 1 3 29 29 H 1.09007 * 109.46972 * 269.97383 * 1 2 3 30 30 H 1.08998 * 109.47484 * 29.97290 * 1 2 3 31 31 H 1.08996 * 109.47272 * 149.97260 * 1 2 3 32 32 H 1.08001 * 119.83818 * 0.05448 * 3 2 1 33 33 H 1.08002 * 119.64793 * 180.02562 * 4 3 2 34 34 H 1.08006 * 125.62397 * 180.02562 * 7 6 5 35 35 H 1.09000 * 113.54132 * 269.00062 * 12 11 9 36 36 H 1.09002 * 113.54082 * 39.67470 * 12 11 9 37 37 H 1.08999 * 113.54748 * 320.32973 * 14 11 9 38 38 H 1.09009 * 113.54346 * 90.93461 * 14 11 9 39 39 H 1.09005 * 110.76317 * 21.22737 * 15 13 12 40 40 H 1.08992 * 110.76705 * 144.62660 * 15 13 12 41 41 H 1.08992 * 109.86632 * 98.83461 * 16 15 13 42 42 H 1.09002 * 109.86106 * 219.93603 * 16 15 13 43 43 H 0.96999 * 119.99970 * 179.97438 * 21 20 18 44 44 H 1.09003 * 110.39982 * 263.49933 * 26 17 16 45 45 H 1.08997 * 110.40695 * 141.07944 * 26 17 16 46 46 H 1.08005 * 120.37469 * 359.95329 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2140 1.2102 0.0000 4 6 3.5659 1.2108 -0.0005 5 7 4.2621 0.0396 -0.0016 6 7 5.6352 -0.2343 -0.0018 7 6 5.8244 -1.5279 -0.0024 8 6 4.5728 -2.1675 0.0025 9 6 4.3306 -3.6130 0.0096 10 8 3.1904 -4.0390 0.0119 11 7 5.3703 -4.4705 0.0136 12 6 6.8394 -4.3515 0.0061 13 6 6.8845 -5.7159 0.6761 14 6 5.5331 -5.9353 0.0211 15 6 6.9276 -5.7436 2.2103 16 6 8.4368 -5.9063 2.5051 17 7 9.0654 -6.4512 1.2914 18 6 10.3988 -6.7227 1.1380 19 1 10.7645 -7.1226 0.2037 20 6 11.2805 -6.4840 2.1832 21 7 10.8348 -5.9971 3.3219 22 14 13.0996 -6.8537 1.9737 23 1 13.6433 -6.0444 0.8537 24 1 13.8212 -6.5143 3.2263 25 1 13.2799 -8.2971 1.6745 26 6 8.0226 -6.6563 0.2649 27 6 3.5960 -1.1527 -0.0016 28 6 2.1953 -1.1781 -0.0005 29 1 -0.3633 -0.0005 1.0277 30 1 -0.3634 0.8902 -0.5134 31 1 -0.3633 -0.8897 -0.5142 32 1 1.6762 2.1467 0.0009 33 1 4.0997 2.1496 -0.0001 34 1 6.7841 -2.0233 -0.0024 35 1 7.2705 -4.3435 -0.9950 36 1 7.2140 -3.5435 0.6346 37 1 4.8171 -6.4497 0.6620 38 1 5.5969 -6.3715 -0.9759 39 1 6.5517 -4.8079 2.6244 40 1 6.3645 -6.5926 2.5975 41 1 8.8739 -4.9371 2.7455 42 1 8.5794 -6.5955 3.3375 43 1 11.4509 -5.8307 4.0524 44 1 7.6814 -7.6915 0.2715 45 1 8.4014 -6.3864 -0.7208 46 1 1.6662 -2.1197 -0.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072829758.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:53 Heat of formation + Delta-G solvation = 121.590493 kcal Electronic energy + Delta-G solvation = -29036.810626 eV Core-core repulsion = 25122.889503 eV Total energy + Delta-G solvation = -3913.921123 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.27181 -41.80198 -39.38332 -38.61043 -37.25063 -34.64756 -34.04976 -32.44086 -31.54528 -30.72349 -29.86268 -28.27979 -27.29716 -27.13355 -25.54676 -24.62525 -23.29623 -22.85117 -22.10209 -20.56049 -19.76827 -18.75922 -18.60663 -17.84833 -17.29475 -17.06591 -16.95537 -16.66962 -16.43225 -16.16891 -15.72698 -15.61429 -15.59082 -14.85469 -14.51979 -14.34135 -14.21652 -13.97579 -13.68843 -13.67288 -13.51244 -13.27794 -12.98613 -12.83966 -12.75619 -12.68574 -12.52933 -12.20529 -12.05978 -12.03786 -11.84269 -11.79303 -11.62636 -11.43839 -11.18034 -10.85715 -10.63935 -10.39192 -9.73335 -8.83011 -8.74899 -7.78898 -5.13578 -0.43628 -0.06967 0.99455 1.07941 1.50029 1.52712 1.58678 1.85858 2.09017 2.49626 2.54457 3.06048 3.28657 3.39649 3.43462 3.58839 3.64384 3.78015 3.80562 3.86891 4.02228 4.08710 4.11020 4.24355 4.40366 4.44580 4.51933 4.54435 4.66724 4.70545 4.76319 4.79618 4.83245 4.87503 4.90057 5.00234 5.06759 5.10537 5.19829 5.21900 5.28201 5.32498 5.44905 5.52798 5.70248 5.72637 5.82200 6.24608 6.30178 6.73320 7.15663 7.20006 7.83608 8.48187 9.31450 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.020945 B = 0.002467 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.486385 B =11346.027918 C =12152.849274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.019 4.019 3 C -0.141 4.141 4 C 0.100 3.900 5 N -0.274 5.274 6 N -0.345 5.345 7 C 0.120 3.880 8 C -0.346 4.346 9 C 0.624 3.376 10 O -0.593 6.593 11 N -0.641 5.641 12 C 0.119 3.881 13 C -0.097 4.097 14 C 0.131 3.869 15 C -0.103 4.103 16 C 0.191 3.809 17 N -0.625 5.625 18 C -0.234 4.234 19 H 0.087 0.913 20 C -0.069 4.069 21 N -0.954 5.954 22 Si 0.975 3.025 23 H -0.276 1.276 24 H -0.300 1.300 25 H -0.278 1.278 26 C 0.152 3.848 27 C 0.155 3.845 28 C -0.148 4.148 29 H 0.093 0.907 30 H 0.103 0.897 31 H 0.073 0.927 32 H 0.208 0.792 33 H 0.204 0.796 34 H 0.209 0.791 35 H 0.110 0.890 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.109 0.891 39 H 0.065 0.935 40 H 0.073 0.927 41 H 0.012 0.988 42 H 0.004 0.996 43 H 0.244 0.756 44 H 0.036 0.964 45 H 0.059 0.941 46 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.191 15.850 -9.183 28.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.025 4.025 3 C -0.161 4.161 4 C -0.025 4.025 5 N -0.038 5.038 6 N -0.165 5.165 7 C -0.060 4.060 8 C -0.360 4.360 9 C 0.418 3.582 10 O -0.477 6.477 11 N -0.374 5.374 12 C -0.003 4.003 13 C -0.099 4.099 14 C 0.008 3.992 15 C -0.141 4.141 16 C 0.066 3.934 17 N -0.351 5.351 18 C -0.363 4.363 19 H 0.105 0.895 20 C -0.262 4.262 21 N -0.603 5.603 22 Si 0.804 3.196 23 H -0.202 1.202 24 H -0.226 1.226 25 H -0.204 1.204 26 C 0.027 3.973 27 C 0.033 3.967 28 C -0.167 4.167 29 H 0.112 0.888 30 H 0.122 0.878 31 H 0.091 0.909 32 H 0.225 0.775 33 H 0.221 0.779 34 H 0.225 0.775 35 H 0.128 0.872 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.127 0.873 39 H 0.084 0.916 40 H 0.092 0.908 41 H 0.030 0.970 42 H 0.022 0.978 43 H 0.053 0.947 44 H 0.054 0.946 45 H 0.077 0.923 46 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -21.031 16.909 -9.077 28.471 hybrid contribution 1.255 -1.314 0.484 1.880 sum -19.777 15.595 -8.593 26.611 Atomic orbital electron populations 1.20990 0.86869 1.05069 1.04405 1.20568 0.99154 0.91450 0.91281 1.21459 0.91073 1.00867 1.02741 1.22461 0.93140 0.88290 0.98640 1.46346 1.06011 1.06117 1.45321 1.77523 0.89126 1.17109 1.32787 1.24564 0.99305 0.90371 0.91722 1.19587 0.92416 0.92756 1.31257 1.16498 0.82659 0.84159 0.74880 1.90693 1.22203 1.79597 1.55208 1.49441 1.06625 1.08445 1.72889 1.23069 0.78389 0.97251 1.01596 1.21981 0.95376 0.96588 0.95955 1.22770 0.94049 0.80653 1.01692 1.22253 0.96777 1.01464 0.93579 1.20895 0.88301 0.95811 0.88370 1.44819 1.03242 1.75422 1.11650 1.19434 0.82875 1.35160 0.98809 0.89480 1.25616 1.02242 1.02222 0.96090 1.70182 1.34082 1.51730 1.04322 0.85191 0.80027 0.78049 0.76310 1.20154 1.22634 1.20437 1.21309 0.87236 0.96140 0.92618 1.19518 0.93806 0.85960 0.97373 1.20747 0.89208 1.01211 1.05584 0.88813 0.87791 0.90853 0.77522 0.77922 0.77466 0.87179 0.90455 0.90388 0.87279 0.91623 0.90800 0.96990 0.97778 0.94653 0.94629 0.92263 0.83816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.74 10.03 71.24 0.71 -0.02 16 2 C -0.02 -0.25 5.89 -19.82 -0.12 -0.37 16 3 C -0.14 -1.24 9.67 22.03 0.21 -1.02 16 4 C 0.10 1.42 11.17 83.30 0.93 2.35 16 5 N -0.27 -6.77 3.86 -187.27 -0.72 -7.49 16 6 N -0.34 -9.94 12.57 -56.62 -0.71 -10.65 16 7 C 0.12 3.51 11.09 85.42 0.95 4.45 16 8 C -0.35 -10.94 6.17 -19.90 -0.12 -11.06 16 9 C 0.62 21.46 8.03 86.42 0.69 22.15 16 10 O -0.59 -23.21 16.48 -4.40 -0.07 -23.28 16 11 N -0.64 -19.54 3.70 -864.71 -3.20 -22.73 16 12 C 0.12 3.40 6.41 83.76 0.54 3.94 16 13 C -0.10 -3.09 1.06 -52.63 -0.06 -3.14 16 14 C 0.13 3.60 8.02 83.66 0.67 4.27 16 15 C -0.10 -3.79 6.40 31.32 0.20 -3.59 16 16 C 0.19 9.34 5.39 86.81 0.47 9.81 16 17 N -0.62 -30.71 3.41 -693.45 -2.36 -33.08 16 18 C -0.23 -12.66 10.28 84.03 0.86 -11.80 16 19 H 0.09 4.43 7.83 -2.91 -0.02 4.41 16 20 C -0.07 -3.89 5.49 84.86 0.47 -3.42 16 21 N -0.95 -57.36 10.30 21.65 0.22 -57.14 16 22 Si 0.98 45.40 29.55 68.60 2.03 47.43 16 23 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 24 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 25 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 26 C 0.15 5.60 6.70 86.22 0.58 6.18 16 27 C 0.15 4.35 6.76 39.50 0.27 4.62 16 28 C -0.15 -3.36 9.38 22.30 0.21 -3.15 16 29 H 0.09 0.45 8.14 -2.38 -0.02 0.43 16 30 H 0.10 0.11 8.10 -2.39 -0.02 0.09 16 31 H 0.07 0.57 8.09 -2.39 -0.02 0.55 16 32 H 0.21 -0.22 8.06 -2.91 -0.02 -0.24 16 33 H 0.20 1.46 8.06 -2.91 -0.02 1.44 16 34 H 0.21 5.36 5.17 -2.91 -0.02 5.35 16 35 H 0.11 2.70 8.06 -2.39 -0.02 2.68 16 36 H 0.08 2.27 6.22 -2.39 -0.01 2.26 16 37 H 0.08 2.17 8.13 -2.39 -0.02 2.16 16 38 H 0.11 2.50 8.14 -2.38 -0.02 2.48 16 39 H 0.07 2.37 8.07 -2.38 -0.02 2.35 16 40 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 41 H 0.01 0.65 7.38 -2.39 -0.02 0.64 16 42 H 0.00 0.22 7.49 -2.39 -0.02 0.20 16 43 H 0.24 14.44 8.31 -92.71 -0.77 13.67 16 44 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 45 H 0.06 2.01 8.00 -2.39 -0.02 1.99 16 46 H 0.14 3.66 7.12 -2.91 -0.02 3.64 16 Total: -1.00 -79.41 375.79 3.65 -75.76 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: 1.00 Total: 10.99 kcal Atomic # 6 Polarization: 12.73 SS G_CDS: 7.46 Total: 20.19 kcal Atomic # 7 Polarization: -124.32 SS G_CDS: -6.77 Total: -131.10 kcal Atomic # 8 Polarization: -23.21 SS G_CDS: -0.07 Total: -23.28 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Total: -79.41 3.65 -75.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072829758.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 197.351 kcal (2) G-P(sol) polarization free energy of solvation -79.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds