Wall clock time and date at job start Sat Apr 11 2020 06:06:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.40567 * 120.13518 * 2 1 4 4 C 1.34850 * 120.34076 * 180.02562 * 3 2 1 5 5 N 1.36679 * 120.64251 * 0.02562 * 4 3 2 6 6 C 1.36193 * 132.29692 * 180.36176 * 5 4 3 7 7 C 1.36575 * 107.09473 * 180.08713 * 6 5 4 8 8 C 1.47590 * 125.91779 * 179.84330 * 7 6 5 9 9 O 1.21591 * 119.99932 * 359.71551 * 8 7 6 10 10 N 1.34774 * 120.00131 * 179.71539 * 8 7 6 11 11 C 1.47889 * 134.34502 * 179.97438 * 10 8 7 12 12 C 1.52374 * 85.59061 * 156.55754 * 11 10 8 13 13 C 1.47894 * 134.33987 * 0.06188 * 10 8 7 14 14 C 1.53656 * 116.38986 * 141.35925 * 12 11 10 15 15 C 1.54597 * 102.73161 * 95.48609 * 14 12 11 16 16 N 1.47136 * 107.36670 * 20.75459 * 15 14 12 17 17 C 1.36938 * 125.58996 * 180.66450 * 16 15 14 18 18 H 1.08002 * 119.99889 * 180.02562 * 17 16 15 19 19 C 1.38811 * 120.00054 * 0.02562 * 17 16 15 20 20 N 1.31624 * 119.99551 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00171 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46947 * 90.00409 * 21 19 17 23 23 H 1.48501 * 109.46857 * 210.00030 * 21 19 17 24 24 H 1.48501 * 109.46963 * 329.99874 * 21 19 17 25 25 C 1.47729 * 108.82430 * 0.92790 * 16 15 14 26 26 N 1.34582 * 108.16303 * 359.57783 * 7 6 5 27 27 C 1.32232 * 109.02259 * 0.26421 * 26 7 6 28 28 C 1.35897 * 120.13192 * 180.02562 * 2 1 3 29 29 H 1.09003 * 109.47199 * 269.98107 * 1 2 3 30 30 H 1.08998 * 109.47020 * 29.97534 * 1 2 3 31 31 H 1.08995 * 109.47569 * 149.97678 * 1 2 3 32 32 H 1.08001 * 119.83146 * 0.04638 * 3 2 1 33 33 H 1.08008 * 119.68149 * 179.97438 * 4 3 2 34 34 H 1.07998 * 126.45349 * 359.95965 * 6 5 4 35 35 H 1.09000 * 113.85076 * 42.39173 * 11 10 8 36 36 H 1.09001 * 113.85367 * 270.72416 * 11 10 8 37 37 H 1.08995 * 113.85635 * 89.27448 * 13 10 8 38 38 H 1.09003 * 113.85124 * 317.60763 * 13 10 8 39 39 H 1.08999 * 110.75504 * 337.17811 * 14 12 11 40 40 H 1.08994 * 110.91686 * 213.87072 * 14 12 11 41 41 H 1.09005 * 109.86535 * 261.31083 * 15 14 12 42 42 H 1.08999 * 109.98373 * 140.26332 * 15 14 12 43 43 H 0.97006 * 119.99721 * 180.02562 * 20 19 17 44 44 H 1.09007 * 110.39933 * 96.33789 * 25 16 15 45 45 H 1.08995 * 110.40116 * 218.74649 * 25 16 15 46 46 H 1.08001 * 120.32667 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2127 1.2157 0.0000 4 6 3.5612 1.2205 -0.0005 5 7 4.2620 0.0471 -0.0016 6 6 5.5968 -0.2233 0.0041 7 6 5.7312 -1.5824 -0.0025 8 6 7.0059 -2.3264 -0.0030 9 8 8.0618 -1.7234 -0.0024 10 7 6.9995 -3.6741 -0.0042 11 6 8.0523 -4.7128 -0.0054 12 6 6.9901 -5.6232 0.5986 13 6 5.9369 -4.7027 -0.0063 14 6 6.9834 -7.0808 0.1126 15 6 7.8169 -7.8047 1.1949 16 7 7.8050 -6.9575 2.3979 17 6 8.4410 -7.2394 3.5774 18 1 8.3713 -6.5507 4.4065 19 6 9.1752 -8.4102 3.7075 20 7 9.2605 -9.2492 2.6969 21 14 10.0434 -8.7944 5.3163 22 1 9.1302 -9.5624 6.2004 23 1 11.2602 -9.6002 5.0419 24 1 10.4299 -7.5262 5.9853 25 6 6.9893 -5.7561 2.1268 26 7 4.5000 -2.1257 -0.0026 27 6 3.6010 -1.1560 -0.0021 28 6 2.1892 -1.1753 -0.0005 29 1 -0.3634 -0.0003 1.0277 30 1 -0.3633 0.8902 -0.5134 31 1 -0.3634 -0.8897 -0.5142 32 1 1.6721 2.1507 0.0008 33 1 4.0927 2.1608 -0.0009 34 1 6.3982 0.5007 0.0103 35 1 8.8834 -4.4988 0.6666 36 1 8.3746 -5.0125 -1.0026 37 1 5.6126 -4.9994 -1.0037 38 1 5.1073 -4.4808 0.6651 39 1 7.4614 -7.1648 -0.8634 40 1 5.9679 -7.4752 0.0790 41 1 8.8409 -7.9384 0.8461 42 1 7.3729 -8.7743 1.4204 43 1 9.7733 -10.0676 2.7879 44 1 5.9731 -5.8956 2.4956 45 1 7.4433 -4.8774 2.5848 46 1 1.6567 -2.1149 -0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072901356.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:00 Heat of formation + Delta-G solvation = 125.160514 kcal Electronic energy + Delta-G solvation = -28795.975372 eV Core-core repulsion = 24882.209056 eV Total energy + Delta-G solvation = -3913.766315 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.10233 -40.33024 -38.46325 -37.56656 -35.48695 -34.55793 -32.15412 -31.12646 -30.39072 -29.53653 -28.34535 -27.31062 -26.19150 -25.69530 -24.17659 -23.50104 -22.44232 -22.02216 -20.20210 -19.26165 -18.25796 -18.04547 -17.12167 -16.87342 -16.47895 -16.29745 -15.68434 -15.30188 -15.11959 -14.87965 -14.66251 -14.33096 -14.21308 -13.96025 -13.64130 -13.45929 -13.00430 -12.79644 -12.53092 -12.45090 -12.12346 -12.05192 -11.89388 -11.77592 -11.63052 -11.02254 -11.00389 -10.86235 -10.70911 -10.47408 -10.33876 -10.22965 -10.02959 -9.73928 -9.60307 -9.47738 -9.17528 -8.53476 -8.40438 -8.13389 -6.76561 -5.65204 -2.98025 0.29894 0.87942 1.94969 2.16763 3.02360 3.05125 3.44816 3.49926 3.51887 3.57420 3.74841 4.03063 4.27924 4.32162 4.53961 4.64260 4.70798 4.82702 4.93419 5.06489 5.12150 5.15976 5.17740 5.30811 5.35133 5.47886 5.57076 5.63548 5.68294 5.80197 5.82076 5.87262 5.91070 5.98091 6.07658 6.11018 6.27675 6.31629 6.34884 6.57128 6.63189 6.68128 6.78744 6.83109 7.44324 7.62393 7.68631 7.89073 7.91822 8.31921 8.33392 9.28649 9.88337 10.54498 11.46511 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018303 B = 0.002349 C = 0.002294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.396901 B =11915.083473 C =12202.397013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.073 4.073 3 C -0.136 4.136 4 C 0.059 3.941 5 N -0.368 5.368 6 C -0.023 4.023 7 C 0.020 3.980 8 C 0.616 3.384 9 O -0.546 6.546 10 N -0.622 5.622 11 C 0.132 3.868 12 C -0.108 4.108 13 C 0.131 3.869 14 C -0.130 4.130 15 C 0.179 3.821 16 N -0.605 5.605 17 C -0.224 4.224 18 H 0.077 0.923 19 C -0.009 4.009 20 N -0.923 5.923 21 Si 0.911 3.089 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.282 1.282 25 C 0.163 3.837 26 N -0.457 5.457 27 C 0.227 3.773 28 C -0.078 4.078 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.151 0.849 33 H 0.166 0.834 34 H 0.195 0.805 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.091 0.909 39 H 0.063 0.937 40 H 0.064 0.936 41 H 0.046 0.954 42 H 0.044 0.956 43 H 0.251 0.749 44 H 0.025 0.975 45 H 0.039 0.961 46 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.315 20.856 -9.868 29.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.079 4.079 3 C -0.157 4.157 4 C -0.062 4.062 5 N -0.040 5.040 6 C -0.158 4.158 7 C -0.113 4.113 8 C 0.403 3.597 9 O -0.424 6.424 10 N -0.355 5.355 11 C 0.010 3.990 12 C -0.110 4.110 13 C 0.008 3.992 14 C -0.169 4.169 15 C 0.054 3.946 16 N -0.332 5.332 17 C -0.353 4.353 18 H 0.094 0.906 19 C -0.205 4.205 20 N -0.570 5.570 21 Si 0.742 3.258 22 H -0.217 1.217 23 H -0.217 1.217 24 H -0.207 1.207 25 C 0.037 3.963 26 N -0.178 5.178 27 C -0.019 4.019 28 C -0.098 4.098 29 H 0.095 0.905 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.169 0.831 33 H 0.183 0.817 34 H 0.212 0.788 35 H 0.106 0.894 36 H 0.103 0.897 37 H 0.101 0.899 38 H 0.109 0.891 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.064 0.936 42 H 0.062 0.938 43 H 0.062 0.938 44 H 0.042 0.958 45 H 0.057 0.943 46 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -17.664 20.374 -9.776 28.683 hybrid contribution 0.670 0.706 0.797 1.258 sum -16.994 21.080 -8.979 28.527 Atomic orbital electron populations 1.20773 0.89541 1.03453 1.03007 1.19757 0.97117 0.91971 0.99013 1.20745 0.92061 0.99366 1.03513 1.21648 0.93041 0.88676 1.02843 1.42767 1.07157 1.07843 1.46210 1.22582 0.83481 0.97872 1.11879 1.20622 0.92580 0.90795 1.07318 1.16509 0.85997 0.80490 0.76657 1.90793 1.31333 1.67908 1.52371 1.49970 1.11972 1.02863 1.70683 1.23022 0.92887 0.82397 1.00655 1.22519 0.94940 0.94807 0.98696 1.23038 0.92526 0.82858 1.00786 1.22653 1.01081 0.93367 0.99818 1.21204 0.97267 0.92515 0.83625 1.44567 1.57749 1.19222 1.11628 1.19049 1.23503 1.03373 0.89349 0.90552 1.24780 1.00716 0.97180 0.97840 1.69966 1.45382 1.12127 1.29572 0.86126 0.78966 0.77885 0.82848 1.21684 1.21720 1.20749 1.21026 0.94860 0.90992 0.89444 1.70933 0.97874 1.28489 1.20531 1.20998 0.94448 0.80179 1.06245 1.20169 0.87942 0.99777 1.01889 0.90472 0.91019 0.90828 0.83098 0.81698 0.78812 0.89435 0.89739 0.89893 0.89108 0.91806 0.91697 0.93568 0.93810 0.93836 0.95768 0.94290 0.82957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.40 10.02 36.01 0.36 -0.04 16 2 C -0.07 -0.46 5.88 -104.58 -0.62 -1.08 16 3 C -0.14 -0.73 9.67 -39.91 -0.39 -1.11 16 4 C 0.06 0.40 10.93 -16.59 -0.18 0.22 16 5 N -0.37 -3.92 2.93 -62.37 -0.18 -4.11 16 6 C -0.02 -0.29 11.47 -16.22 -0.19 -0.47 16 7 C 0.02 0.31 6.90 -83.45 -0.58 -0.27 16 8 C 0.62 10.98 8.05 -12.45 -0.10 10.88 16 9 O -0.55 -11.02 17.60 5.29 0.09 -10.92 16 10 N -0.62 -10.64 3.62 -188.10 -0.68 -11.32 16 11 C 0.13 2.29 8.14 -3.60 -0.03 2.26 16 12 C -0.11 -1.90 0.99 -154.84 -0.15 -2.06 16 13 C 0.13 1.99 7.22 -3.59 -0.03 1.97 16 14 C -0.13 -2.34 6.36 -25.55 -0.16 -2.50 16 15 C 0.18 4.29 5.39 -2.86 -0.02 4.27 16 16 N -0.61 -15.63 3.41 -170.50 -0.58 -16.21 16 17 C -0.22 -6.38 10.28 -15.06 -0.15 -6.53 16 18 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 19 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 20 N -0.92 -27.30 10.30 55.49 0.57 -26.73 16 21 Si 0.91 22.57 29.55 -169.99 -5.02 17.54 16 22 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 23 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 24 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 25 C 0.16 3.49 6.63 -3.16 -0.02 3.47 16 26 N -0.46 -6.74 9.69 -9.35 -0.09 -6.83 16 27 C 0.23 2.76 7.79 -156.04 -1.22 1.54 16 28 C -0.08 -0.69 9.75 -39.30 -0.38 -1.07 16 29 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.07 0.17 8.09 -51.93 -0.42 -0.26 16 31 H 0.07 0.24 8.08 -51.93 -0.42 -0.18 16 32 H 0.15 0.33 8.06 -52.49 -0.42 -0.10 16 33 H 0.17 0.57 8.06 -52.48 -0.42 0.15 16 34 H 0.19 1.95 8.06 -52.49 -0.42 1.53 16 35 H 0.09 1.70 8.12 -51.93 -0.42 1.28 16 36 H 0.08 1.31 8.04 -51.93 -0.42 0.89 16 37 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 38 H 0.09 1.40 7.50 -51.93 -0.39 1.01 16 39 H 0.06 1.02 7.99 -51.93 -0.41 0.60 16 40 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.05 1.23 7.40 -51.93 -0.38 0.84 16 42 H 0.04 1.16 7.47 -51.93 -0.39 0.78 16 43 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 44 H 0.02 0.52 8.14 -51.92 -0.42 0.10 16 45 H 0.04 0.87 8.07 -51.93 -0.42 0.45 16 46 H 0.15 1.13 8.06 -52.49 -0.42 0.71 16 LS Contribution 381.09 15.07 5.74 5.74 Total: -1.00 -35.49 381.09 -10.69 -46.18 By element: Atomic # 1 Polarization: 4.14 SS G_CDS: -6.60 Total: -2.46 kcal Atomic # 6 Polarization: 13.05 SS G_CDS: -3.94 Total: 9.11 kcal Atomic # 7 Polarization: -64.24 SS G_CDS: -0.96 Total: -65.20 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: 0.09 Total: -10.92 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -35.49 -10.69 -46.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072901356.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.345 kcal (2) G-P(sol) polarization free energy of solvation -35.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds