Wall clock time and date at job start Sat Apr 11 2020 06:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30372 * 125.96857 * 2 1 4 4 N 1.39912 * 109.02593 * 180.02562 * 3 2 1 5 5 C 1.46500 * 125.74572 * 180.02562 * 4 3 2 6 6 C 1.34420 * 108.51396 * 359.76848 * 4 3 2 7 7 F 1.35098 * 126.34411 * 180.25408 * 6 4 3 8 8 C 1.38504 * 107.30764 * 0.37079 * 6 4 3 9 9 C 1.47166 * 126.45605 * 179.89631 * 8 6 4 10 10 O 1.21635 * 120.00240 * 269.69063 * 9 8 6 11 11 N 1.34781 * 120.00092 * 89.68739 * 9 8 6 12 12 C 1.46503 * 120.00049 * 180.02562 * 11 9 8 13 13 C 1.52996 * 109.46941 * 179.97438 * 12 11 9 14 14 H 1.09002 * 108.45330 * 57.87787 * 13 12 11 15 15 C 1.47486 * 108.54728 * 175.84817 * 13 12 11 16 16 N 1.50125 * 106.48513 * 178.01130 * 15 13 12 17 17 C 1.36929 * 120.63754 * 111.36996 * 16 15 13 18 18 H 1.07999 * 120.00213 * 155.82262 * 17 16 15 19 19 C 1.38811 * 119.99950 * 335.82695 * 17 16 15 20 20 N 1.31617 * 120.00151 * 340.44346 * 19 17 16 21 21 Si 1.86801 * 120.00034 * 160.44245 * 19 17 16 22 22 H 1.48494 * 109.47175 * 180.02562 * 21 19 17 23 23 H 1.48505 * 109.47257 * 300.00362 * 21 19 17 24 24 H 1.48504 * 109.47190 * 59.99826 * 21 19 17 25 25 C 1.43425 * 118.72616 * 291.09709 * 16 15 13 26 26 C 1.55336 * 116.23732 * 89.62503 * 25 16 15 27 27 C 1.55181 * 108.87527 * 319.46297 * 26 25 16 28 28 O 1.39639 * 110.56783 * 322.14149 * 27 26 25 29 29 H 1.08999 * 109.46671 * 269.96925 * 1 2 3 30 30 H 1.08995 * 109.47037 * 29.97028 * 1 2 3 31 31 H 1.08999 * 109.47392 * 149.97249 * 1 2 3 32 32 H 1.08997 * 109.47104 * 89.97414 * 5 4 3 33 33 H 1.08996 * 109.47059 * 209.97501 * 5 4 3 34 34 H 1.09001 * 109.46866 * 329.98000 * 5 4 3 35 35 H 0.97000 * 119.99838 * 0.02562 * 11 9 8 36 36 H 1.09002 * 109.47027 * 59.99740 * 12 11 9 37 37 H 1.09002 * 109.46850 * 299.99673 * 12 11 9 38 38 H 1.08995 * 110.11648 * 58.80095 * 15 13 12 39 39 H 1.08997 * 110.15233 * 297.23722 * 15 13 12 40 40 H 0.97003 * 120.00213 * 179.97438 * 20 19 17 41 41 H 1.08997 * 108.12625 * 211.38277 * 25 16 15 42 42 H 1.08999 * 108.12979 * 328.08579 * 25 16 15 43 43 H 1.08998 * 109.56591 * 79.28523 * 26 25 16 44 44 H 1.09002 * 109.56988 * 199.64262 * 26 25 16 45 45 H 1.09004 * 109.25672 * 82.42923 * 27 26 25 46 46 H 1.09006 * 109.25717 * 201.89719 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2727 1.0552 0.0000 4 7 3.6111 0.6474 -0.0006 5 6 4.7763 1.5354 -0.0002 6 6 3.6480 -0.6963 0.0042 7 9 4.7577 -1.4667 0.0101 8 6 2.3375 -1.1444 -0.0007 9 6 1.8931 -2.5474 -0.0003 10 8 1.7086 -3.1273 -1.0534 11 7 1.6906 -3.1898 1.1672 12 6 1.2487 -4.5866 1.1676 13 6 1.0964 -5.0728 2.6103 14 1 0.3837 -4.4241 3.1196 15 6 0.5562 -6.4450 2.5883 16 7 0.4724 -6.8927 4.0188 17 6 -0.7429 -7.0792 4.6216 18 1 -0.8297 -7.7453 5.4673 19 6 -1.8633 -6.4122 4.1456 20 7 -1.7217 -5.3385 3.3977 21 14 -3.5721 -7.0385 4.5666 22 1 -4.5904 -6.1570 3.9412 23 1 -3.7329 -8.4223 4.0522 24 1 -3.7515 -7.0345 6.0408 25 6 1.6897 -7.1272 4.7401 26 6 2.2865 -5.9077 5.4948 27 6 2.1394 -4.6453 4.6045 28 8 2.3574 -4.9634 3.2624 29 1 -0.3632 -0.0006 1.0277 30 1 -0.3633 0.8902 -0.5133 31 1 -0.3634 -0.8897 -0.5142 32 1 5.0652 1.7553 1.0275 33 1 5.6047 1.0480 -0.5142 34 1 4.5258 2.4637 -0.5137 35 1 1.8374 -2.7273 2.0071 36 1 1.9873 -5.2015 0.6534 37 1 0.2902 -4.6646 0.6545 38 1 1.2238 -7.1018 2.0308 39 1 -0.4362 -6.4507 2.1375 40 1 -2.5047 -4.8726 3.0647 41 1 1.5063 -7.9189 5.4665 42 1 2.4389 -7.4849 4.0339 43 1 1.7486 -5.7590 6.4311 44 1 3.3414 -6.0873 5.7023 45 1 1.1342 -4.2396 4.7192 46 1 2.8669 -3.8969 4.9188 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073872555.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:05 Heat of formation + Delta-G solvation = -10.250707 kcal Electronic energy + Delta-G solvation = -30838.990767 eV Core-core repulsion = 26488.583356 eV Total energy + Delta-G solvation = -4350.407411 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -49.45080 -41.51355 -39.37760 -38.49316 -35.00822 -34.44173 -34.37324 -32.16920 -31.24069 -30.51148 -29.67960 -28.54088 -26.50716 -25.37067 -25.17880 -22.97103 -22.03325 -20.86410 -20.77804 -19.96728 -19.58723 -18.07163 -17.12574 -17.06064 -16.74733 -16.23001 -15.97482 -15.54489 -14.91303 -14.87037 -14.73129 -14.35793 -14.20997 -13.94592 -13.81812 -13.74916 -13.51796 -13.23750 -12.98774 -12.77417 -12.56274 -12.49307 -12.30972 -12.20030 -11.93689 -11.41041 -11.22541 -11.04158 -10.83797 -10.73870 -10.49654 -10.17455 -9.98095 -9.82354 -9.65797 -9.53112 -9.50688 -8.87699 -8.79131 -8.65919 -8.49247 -6.82074 -5.91939 -3.30071 1.19346 1.70992 2.12585 2.73671 3.34318 3.40935 3.43086 3.54170 3.69362 4.16261 4.43966 4.56880 4.71169 4.71402 4.87915 4.98751 5.06520 5.17851 5.24696 5.28837 5.51217 5.61592 5.69309 5.74828 5.82393 5.92528 6.02783 6.14489 6.20469 6.33633 6.41355 6.48070 6.48444 6.56861 6.67251 6.70892 6.81718 6.92679 6.95940 7.11785 7.17889 7.33014 7.71933 7.83183 8.14174 8.32300 8.48454 9.07329 9.75467 10.29835 11.17253 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.014937 B = 0.003169 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.088450 B = 8834.777111 C = 9777.030708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.135 3.865 3 N -0.274 5.274 4 N -0.377 5.377 5 C 0.094 3.906 6 C 0.292 3.708 7 F -0.088 7.088 8 C -0.283 4.283 9 C 0.593 3.407 10 O -0.538 6.538 11 N -0.701 5.701 12 C 0.120 3.880 13 C 0.061 3.939 14 H 0.107 0.893 15 C 0.144 3.856 16 N -0.588 5.588 17 C -0.250 4.250 18 H 0.068 0.932 19 C 0.003 3.997 20 N -0.907 5.907 21 Si 0.904 3.096 22 H -0.290 1.290 23 H -0.285 1.285 24 H -0.285 1.285 25 C 0.161 3.839 26 C -0.172 4.172 27 C 0.068 3.932 28 O -0.369 6.369 29 H 0.089 0.911 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.091 0.909 34 H 0.099 0.901 35 H 0.401 0.599 36 H 0.063 0.937 37 H 0.081 0.919 38 H 0.020 0.980 39 H 0.105 0.895 40 H 0.256 0.744 41 H 0.033 0.967 42 H 0.031 0.969 43 H 0.056 0.944 44 H 0.049 0.951 45 H 0.063 0.937 46 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.131 13.044 -4.377 17.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.032 4.032 3 N -0.097 5.097 4 N -0.162 5.162 5 C -0.047 4.047 6 C 0.145 3.855 7 F -0.067 7.067 8 C -0.299 4.299 9 C 0.376 3.624 10 O -0.415 6.415 11 N -0.350 5.350 12 C -0.004 4.004 13 C 0.002 3.998 14 H 0.125 0.875 15 C 0.019 3.981 16 N -0.308 5.308 17 C -0.379 4.379 18 H 0.086 0.914 19 C -0.195 4.195 20 N -0.552 5.552 21 Si 0.734 3.266 22 H -0.216 1.216 23 H -0.211 1.211 24 H -0.211 1.211 25 C 0.032 3.968 26 C -0.213 4.213 27 C -0.010 4.010 28 O -0.288 6.288 29 H 0.108 0.892 30 H 0.100 0.900 31 H 0.105 0.895 32 H 0.102 0.898 33 H 0.109 0.891 34 H 0.118 0.882 35 H 0.235 0.765 36 H 0.082 0.918 37 H 0.099 0.901 38 H 0.038 0.962 39 H 0.123 0.877 40 H 0.066 0.934 41 H 0.051 0.949 42 H 0.050 0.950 43 H 0.075 0.925 44 H 0.068 0.932 45 H 0.081 0.919 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 10.241 13.958 -5.292 18.103 hybrid contribution -0.434 -0.861 0.905 1.322 sum 9.808 13.097 -4.387 16.940 Atomic orbital electron populations 1.20363 0.84985 1.04363 1.04206 1.22238 0.97285 0.87950 0.95693 1.77294 0.84075 1.21191 1.27124 1.48648 1.07289 1.02566 1.57733 1.22043 0.83707 0.94637 1.04286 1.17792 0.83413 0.81789 1.02520 1.91667 1.49655 1.71568 1.93784 1.19803 0.90270 0.95981 1.23893 1.16995 0.77471 0.83795 0.84145 1.90789 1.51741 1.67499 1.31439 1.45931 1.67247 1.13915 1.07917 1.21773 1.00130 0.80089 0.98431 1.22316 0.85158 1.01407 0.90892 0.87521 1.20868 1.00725 0.90856 0.85655 1.44097 1.01160 1.78815 1.06752 1.19216 0.84824 1.19976 1.13904 0.91382 1.24878 0.98400 0.95574 1.00633 1.69861 1.28941 1.16987 1.39402 0.86343 0.84031 0.78345 0.77891 1.21614 1.21118 1.21088 1.20366 0.88489 0.93773 0.94175 1.23582 0.99173 0.99154 0.99400 1.22338 1.00373 0.95486 0.82836 1.87522 1.29072 1.90957 1.21245 0.89227 0.89983 0.89471 0.89848 0.89088 0.88211 0.76466 0.91843 0.90067 0.96193 0.87741 0.93395 0.94913 0.95014 0.92524 0.93224 0.91879 0.93222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.86 10.28 36.01 0.37 -0.49 16 2 C 0.13 1.77 7.26 -82.01 -0.60 1.18 16 3 N -0.27 -3.49 12.49 33.91 0.42 -3.07 16 4 N -0.38 -4.29 3.98 -67.94 -0.27 -4.56 16 5 C 0.09 0.59 11.43 59.85 0.68 1.27 16 6 C 0.29 3.90 8.70 -16.32 -0.14 3.76 16 7 F -0.09 -1.15 17.31 2.25 0.04 -1.11 16 8 C -0.28 -4.19 5.89 -104.97 -0.62 -4.81 16 9 C 0.59 10.17 7.35 -12.63 -0.09 10.07 16 10 O -0.54 -10.99 17.11 5.25 0.09 -10.90 16 11 N -0.70 -11.61 5.43 -61.46 -0.33 -11.94 16 12 C 0.12 2.20 5.24 -4.04 -0.02 2.18 16 13 C 0.06 1.22 1.95 -29.39 -0.06 1.16 16 14 H 0.11 2.39 5.27 -51.93 -0.27 2.11 16 15 C 0.14 3.21 4.75 -4.67 -0.02 3.19 16 16 N -0.59 -13.94 2.60 -174.20 -0.45 -14.40 16 17 C -0.25 -6.43 9.62 -15.06 -0.14 -6.58 16 18 H 0.07 1.76 7.88 -52.49 -0.41 1.34 16 19 C 0.00 0.08 4.91 -17.43 -0.09 -0.01 16 20 N -0.91 -23.15 9.59 55.49 0.53 -22.62 16 21 Si 0.90 20.62 29.60 -169.99 -5.03 15.59 16 22 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 C 0.16 3.38 5.33 -4.43 -0.02 3.35 16 26 C -0.17 -3.19 6.75 -24.34 -0.16 -3.35 16 27 C 0.07 1.26 6.38 38.31 0.24 1.50 16 28 O -0.37 -7.21 9.54 -31.93 -0.30 -7.52 16 29 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.09 0.99 8.01 -51.93 -0.42 0.58 16 32 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.40 6.16 8.31 -40.82 -0.34 5.83 16 36 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.10 2.55 6.02 -51.93 -0.31 2.23 16 40 H 0.26 6.46 8.31 -40.82 -0.34 6.12 16 41 H 0.03 0.68 7.96 -51.93 -0.41 0.26 16 42 H 0.03 0.65 7.97 -51.93 -0.41 0.24 16 43 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.06 1.31 6.66 -51.93 -0.35 0.96 16 46 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 380.74 15.07 5.74 5.74 Total: -1.00 -30.16 380.74 -6.95 -37.11 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -6.71 Total: 5.25 kcal Atomic # 6 Polarization: 13.10 SS G_CDS: -0.67 Total: 12.43 kcal Atomic # 7 Polarization: -56.49 SS G_CDS: -0.10 Total: -56.59 kcal Atomic # 8 Polarization: -18.21 SS G_CDS: -0.21 Total: -18.42 kcal Atomic # 9 Polarization: -1.15 SS G_CDS: 0.04 Total: -1.11 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.03 Total: 15.59 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -30.16 -6.95 -37.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073872555.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.863 kcal (2) G-P(sol) polarization free energy of solvation -30.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds