Wall clock time and date at job start Sat Apr 11 2020 06:04:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35447 * 126.38856 * 2 1 4 4 N 1.33185 * 108.62245 * 179.97438 * 3 2 1 5 5 C 1.32645 * 109.12750 * 0.08890 * 4 3 2 6 6 C 1.40653 * 132.14963 * 179.91101 * 5 4 3 7 7 C 1.38435 * 119.08635 * 179.97438 * 6 5 4 8 8 C 1.47653 * 120.37082 * 179.97438 * 7 6 5 9 9 O 1.21590 * 120.00274 * 153.02730 * 8 7 6 10 10 N 1.34781 * 120.00048 * 333.02831 * 8 7 6 11 11 C 1.47396 * 125.58523 * 3.64165 * 10 8 7 12 12 C 1.54859 * 104.81085 * 204.60610 * 11 10 8 13 13 C 1.55120 * 101.77647 * 322.81781 * 12 11 10 14 14 H 1.08995 * 113.46568 * 158.33266 * 13 12 11 15 15 C 1.54049 * 108.25929 * 285.18382 * 13 12 11 16 16 N 1.46703 * 106.82838 * 135.80631 * 15 13 12 17 17 C 1.36944 * 125.31870 * 161.79830 * 16 15 13 18 18 H 1.07994 * 119.99993 * 359.97438 * 17 16 15 19 19 C 1.38820 * 119.99589 * 179.97438 * 17 16 15 20 20 N 1.31623 * 119.99920 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 119.99625 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47153 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.46868 * 120.00286 * 21 19 17 24 24 H 1.48497 * 109.47298 * 239.99990 * 21 19 17 25 25 C 1.46628 * 109.35808 * 341.82275 * 16 15 13 26 26 C 1.46728 * 125.59077 * 183.33644 * 10 8 7 27 27 H 1.09000 * 111.33137 * 56.12276 * 26 10 8 28 28 C 1.41782 * 119.25959 * 0.02562 * 7 6 5 29 29 C 1.34533 * 120.14479 * 0.02562 * 28 7 6 30 30 N 1.36434 * 126.39306 * 180.02562 * 2 1 3 31 31 H 1.09004 * 109.46983 * 269.96933 * 1 2 3 32 32 H 1.08997 * 109.47399 * 29.97482 * 1 2 3 33 33 H 1.09004 * 109.46593 * 149.97940 * 1 2 3 34 34 H 1.08006 * 125.68653 * 0.04822 * 3 2 1 35 35 H 1.07994 * 120.45295 * 359.95878 * 6 5 4 36 36 H 1.08996 * 110.37496 * 323.44066 * 11 10 8 37 37 H 1.09002 * 110.37023 * 85.77599 * 11 10 8 38 38 H 1.08999 * 110.96598 * 80.93758 * 12 11 10 39 39 H 1.08999 * 110.96638 * 204.65899 * 12 11 10 40 40 H 1.09001 * 109.98316 * 255.15035 * 15 13 12 41 41 H 1.08995 * 109.98399 * 16.46326 * 15 13 12 42 42 H 0.97001 * 119.99018 * 179.97438 * 20 19 17 43 43 H 1.09003 * 109.76322 * 120.92837 * 25 16 15 44 44 H 1.09007 * 109.75962 * 241.63089 * 25 16 15 45 45 H 1.07996 * 119.92529 * 179.97438 * 28 7 6 46 46 H 1.07997 * 119.52142 * 179.70247 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3105 1.0904 0.0000 4 7 3.5789 0.6840 0.0006 5 6 3.6104 -0.6421 -0.0010 6 6 4.6753 -1.5609 -0.0029 7 6 4.3945 -2.9165 -0.0037 8 6 5.4906 -3.9059 -0.0062 9 8 5.3138 -5.0103 0.4706 10 7 6.6871 -3.5848 -0.5371 11 6 7.0596 -2.2647 -1.0767 12 6 8.1959 -2.5565 -2.0875 13 6 8.9671 -3.6989 -1.3758 14 1 9.5692 -4.3040 -2.0535 15 6 9.7776 -3.0857 -0.2181 16 7 9.5947 -3.9660 0.9412 17 6 10.3985 -3.9928 2.0496 18 1 11.2476 -3.3288 2.1170 19 6 10.1219 -4.8734 3.0864 20 7 9.0873 -5.6829 3.0040 21 14 11.2188 -4.9104 4.5979 22 1 12.3059 -3.9103 4.4453 23 1 10.4131 -4.5852 5.8023 24 1 11.8090 -6.2648 4.7482 25 6 8.4170 -4.8129 0.7274 26 6 7.8345 -4.4901 -0.6667 27 1 7.5696 -5.3885 -1.2244 28 6 3.0428 -3.3442 -0.0033 29 6 2.0477 -2.4388 -0.0025 30 7 2.3165 -1.0982 -0.0005 31 1 -0.3633 -0.0006 1.0277 32 1 -0.3634 0.8902 -0.5134 33 1 -0.3633 -0.8899 -0.5142 34 1 1.9781 2.1180 0.0007 35 1 5.6979 -1.2136 -0.0039 36 1 6.2093 -1.8081 -1.5831 37 1 7.4196 -1.6161 -0.2780 38 1 7.7917 -2.8944 -3.0418 39 1 8.8315 -1.6815 -2.2232 40 1 10.8329 -3.0376 -0.4866 41 1 9.4047 -2.0872 0.0098 42 1 8.8943 -6.2984 3.7284 43 1 8.7074 -5.8631 0.7600 44 1 7.6737 -4.6122 1.4991 45 1 2.8115 -4.3991 -0.0043 46 1 1.0216 -2.7758 -0.0071 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075791514.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:08 Heat of formation + Delta-G solvation = 107.434272 kcal Electronic energy + Delta-G solvation = -29886.351407 eV Core-core repulsion = 25971.816424 eV Total energy + Delta-G solvation = -3914.534983 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.03353 -40.37299 -38.25066 -36.85521 -35.00020 -34.09348 -32.29925 -31.47621 -30.86868 -30.29091 -28.74686 -27.21430 -26.25640 -24.82930 -24.20697 -23.39547 -22.29283 -21.37795 -20.70209 -19.75316 -18.86576 -17.84557 -17.11905 -16.82378 -16.59264 -16.25735 -16.01498 -15.12960 -14.81744 -14.63095 -14.20171 -14.14640 -13.79687 -13.73050 -13.44201 -13.40529 -13.21943 -13.02781 -12.70347 -12.59937 -12.21417 -12.00650 -11.94440 -11.87880 -11.54629 -11.12536 -10.98168 -10.85935 -10.70215 -10.44332 -10.28182 -10.24811 -10.11619 -9.84382 -9.68497 -9.61419 -9.01291 -8.56706 -8.25588 -7.90820 -6.78519 -5.64992 -3.00937 0.37566 0.93053 2.34390 2.53801 2.95810 3.16194 3.43095 3.47929 3.51066 3.54551 3.99607 4.22032 4.37093 4.49855 4.53601 4.68565 4.73493 4.82263 4.90965 5.03406 5.10537 5.15665 5.26745 5.30047 5.42556 5.48382 5.50822 5.55092 5.60939 5.70931 5.72653 5.83199 5.85724 5.91230 6.01632 6.17382 6.19839 6.30258 6.39689 6.44534 6.53730 6.63949 6.82712 6.86186 7.55625 7.65048 7.67607 7.84953 7.93002 8.31657 8.43558 9.26567 9.87501 10.50556 11.44881 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014780 B = 0.003093 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.042469 B = 9049.739611 C = 9468.017595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.069 4.069 3 C 0.033 3.967 4 N -0.480 5.480 5 C 0.212 3.788 6 C -0.047 4.047 7 C -0.102 4.102 8 C 0.572 3.428 9 O -0.519 6.519 10 N -0.593 5.593 11 C 0.088 3.912 12 C -0.125 4.125 13 C -0.110 4.110 14 H 0.098 0.902 15 C 0.141 3.859 16 N -0.603 5.603 17 C -0.232 4.232 18 H 0.079 0.921 19 C -0.007 4.007 20 N -0.915 5.915 21 Si 0.911 3.089 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.290 1.290 25 C 0.178 3.822 26 C 0.114 3.886 27 H 0.083 0.917 28 C -0.090 4.090 29 C 0.041 3.959 30 N -0.351 5.351 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.064 0.936 34 H 0.181 0.819 35 H 0.169 0.831 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.072 0.928 39 H 0.085 0.915 40 H 0.036 0.964 41 H 0.019 0.981 42 H 0.252 0.748 43 H 0.052 0.948 44 H 0.056 0.944 45 H 0.162 0.838 46 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.258 10.188 -12.396 22.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.184 4.184 3 C -0.120 4.120 4 N -0.199 5.199 5 C -0.029 4.029 6 C -0.067 4.067 7 C -0.111 4.111 8 C 0.360 3.640 9 O -0.395 6.395 10 N -0.326 5.326 11 C -0.034 4.034 12 C -0.163 4.163 13 C -0.130 4.130 14 H 0.117 0.883 15 C 0.015 3.985 16 N -0.329 5.329 17 C -0.361 4.361 18 H 0.097 0.903 19 C -0.204 4.204 20 N -0.562 5.562 21 Si 0.742 3.258 22 H -0.205 1.205 23 H -0.218 1.218 24 H -0.217 1.217 25 C 0.052 3.948 26 C 0.011 3.989 27 H 0.101 0.899 28 C -0.111 4.111 29 C -0.080 4.080 30 N -0.024 5.024 31 H 0.091 0.909 32 H 0.103 0.897 33 H 0.083 0.917 34 H 0.198 0.802 35 H 0.186 0.814 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.091 0.909 39 H 0.103 0.897 40 H 0.054 0.946 41 H 0.036 0.964 42 H 0.063 0.937 43 H 0.070 0.930 44 H 0.074 0.926 45 H 0.179 0.821 46 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -15.764 9.944 -11.894 22.110 hybrid contribution -0.201 -0.495 0.955 1.094 sum -15.966 9.449 -10.939 21.537 Atomic orbital electron populations 1.20178 0.86480 1.03436 1.02818 1.21306 0.94831 0.85324 1.16938 1.22347 0.87895 0.98635 1.03157 1.70675 1.21773 1.06074 1.21393 1.20708 0.83612 0.90883 1.07743 1.21404 0.98781 0.90013 0.96512 1.20076 0.94492 0.92876 1.03693 1.17430 0.80910 0.86841 0.78802 1.90855 1.81634 1.22368 1.44650 1.48282 1.11804 1.12981 1.59566 1.22747 0.97883 0.85991 0.96822 1.22788 0.96620 0.99347 0.97530 1.23170 0.96148 0.96334 0.97343 0.88334 1.21315 0.96868 0.93504 0.86798 1.44211 1.30290 1.41770 1.16654 1.19051 1.06049 1.17462 0.93495 0.90347 1.24847 0.98236 0.98646 0.98643 1.70000 1.28303 1.25298 1.32573 0.86062 0.79534 0.77274 0.82979 1.20516 1.21803 1.21746 1.21401 0.88870 0.95173 0.89342 1.22898 0.83929 0.91910 1.00198 0.89931 1.20761 0.89996 1.00768 0.99563 1.21396 1.01229 0.80083 1.05336 1.42727 1.08881 1.05734 1.45023 0.90880 0.89710 0.91732 0.80195 0.81363 0.90408 0.90405 0.90926 0.89686 0.94622 0.96377 0.93716 0.92970 0.92613 0.82088 0.81652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.41 10.30 36.01 0.37 -0.04 16 2 C -0.07 -0.70 7.02 -81.54 -0.57 -1.28 16 3 C 0.03 0.37 11.75 -17.96 -0.21 0.16 16 4 N -0.48 -6.92 11.31 -12.80 -0.14 -7.06 16 5 C 0.21 3.00 7.79 -155.97 -1.22 1.79 16 6 C -0.05 -0.66 8.04 -38.60 -0.31 -0.97 16 7 C -0.10 -1.51 5.73 -104.63 -0.60 -2.11 16 8 C 0.57 10.46 7.27 -12.41 -0.09 10.37 16 9 O -0.52 -11.43 16.52 5.29 0.09 -11.34 16 10 N -0.59 -10.29 2.98 -162.97 -0.49 -10.77 16 11 C 0.09 1.21 4.57 -2.57 -0.01 1.20 16 12 C -0.12 -1.52 6.34 -24.63 -0.16 -1.68 16 13 C -0.11 -1.77 4.28 -87.73 -0.38 -2.15 16 14 H 0.10 1.44 8.14 -51.93 -0.42 1.01 16 15 C 0.14 2.80 6.46 -3.38 -0.02 2.78 16 16 N -0.60 -15.43 3.38 -171.39 -0.58 -16.00 16 17 C -0.23 -6.55 10.25 -15.05 -0.15 -6.70 16 18 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 19 C -0.01 -0.20 5.48 -17.43 -0.10 -0.30 16 20 N -0.91 -27.92 10.24 55.49 0.57 -27.35 16 21 Si 0.91 22.64 29.55 -169.99 -5.02 17.61 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 24 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 25 C 0.18 4.47 4.91 -3.18 -0.02 4.46 16 26 C 0.11 2.18 3.68 -65.80 -0.24 1.94 16 27 H 0.08 1.54 8.14 -51.93 -0.42 1.11 16 28 C -0.09 -1.08 9.55 -39.54 -0.38 -1.46 16 29 C 0.04 0.41 10.80 -16.68 -0.18 0.23 16 30 N -0.35 -4.20 2.94 -58.55 -0.17 -4.37 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.32 8.12 -51.93 -0.42 -0.10 16 34 H 0.18 1.38 8.06 -52.48 -0.42 0.95 16 35 H 0.17 2.31 4.58 -52.49 -0.24 2.07 16 36 H 0.08 0.91 6.11 -51.93 -0.32 0.59 16 37 H 0.08 1.13 6.43 -51.93 -0.33 0.79 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.08 0.89 8.07 -51.93 -0.42 0.47 16 40 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.02 0.36 6.58 -51.93 -0.34 0.02 16 42 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 43 H 0.05 1.48 7.33 -51.93 -0.38 1.10 16 44 H 0.06 1.63 6.70 -51.93 -0.35 1.29 16 45 H 0.16 1.74 7.92 -52.49 -0.42 1.33 16 46 H 0.17 1.04 8.04 -52.49 -0.42 0.62 16 LS Contribution 365.39 15.07 5.51 5.51 Total: -1.00 -36.31 365.39 -10.65 -46.95 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -6.15 Total: 0.59 kcal Atomic # 6 Polarization: 10.51 SS G_CDS: -4.26 Total: 6.25 kcal Atomic # 7 Polarization: -64.75 SS G_CDS: -0.81 Total: -65.56 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: 0.09 Total: -11.34 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.61 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -36.31 -10.65 -46.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075791514.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.388 kcal (2) G-P(sol) polarization free energy of solvation -36.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds