Wall clock time and date at job start Sat Apr 11 2020 06:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35447 * 126.38856 * 2 1 4 4 N 1.33185 * 108.62245 * 179.97438 * 3 2 1 5 5 C 1.32645 * 109.12750 * 0.08890 * 4 3 2 6 6 C 1.40653 * 132.14963 * 179.91101 * 5 4 3 7 7 C 1.38435 * 119.08635 * 179.97438 * 6 5 4 8 8 C 1.47653 * 120.37082 * 179.97438 * 7 6 5 9 9 O 1.21590 * 120.00274 * 153.02730 * 8 7 6 10 10 N 1.34781 * 120.00048 * 333.02831 * 8 7 6 11 11 C 1.47396 * 125.58523 * 3.64165 * 10 8 7 12 12 C 1.54859 * 104.81085 * 204.60610 * 11 10 8 13 13 C 1.55120 * 101.77647 * 322.81781 * 12 11 10 14 14 H 1.08995 * 113.46568 * 158.33266 * 13 12 11 15 15 C 1.54049 * 108.25929 * 285.18382 * 13 12 11 16 16 N 1.46703 * 106.82838 * 135.80631 * 15 13 12 17 17 C 1.36944 * 125.31870 * 161.79830 * 16 15 13 18 18 H 1.07994 * 119.99993 * 359.97438 * 17 16 15 19 19 C 1.38820 * 119.99589 * 179.97438 * 17 16 15 20 20 N 1.31623 * 119.99920 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 119.99625 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47153 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.46868 * 120.00286 * 21 19 17 24 24 H 1.48497 * 109.47298 * 239.99990 * 21 19 17 25 25 C 1.46628 * 109.35808 * 341.82275 * 16 15 13 26 26 C 1.46728 * 125.59077 * 183.33644 * 10 8 7 27 27 H 1.09000 * 111.33137 * 56.12276 * 26 10 8 28 28 C 1.41782 * 119.25959 * 0.02562 * 7 6 5 29 29 C 1.34533 * 120.14479 * 0.02562 * 28 7 6 30 30 N 1.36434 * 126.39306 * 180.02562 * 2 1 3 31 31 H 1.09004 * 109.46983 * 269.96933 * 1 2 3 32 32 H 1.08997 * 109.47399 * 29.97482 * 1 2 3 33 33 H 1.09004 * 109.46593 * 149.97940 * 1 2 3 34 34 H 1.08006 * 125.68653 * 0.04822 * 3 2 1 35 35 H 1.07994 * 120.45295 * 359.95878 * 6 5 4 36 36 H 1.08996 * 110.37496 * 323.44066 * 11 10 8 37 37 H 1.09002 * 110.37023 * 85.77599 * 11 10 8 38 38 H 1.08999 * 110.96598 * 80.93758 * 12 11 10 39 39 H 1.08999 * 110.96638 * 204.65899 * 12 11 10 40 40 H 1.09001 * 109.98316 * 255.15035 * 15 13 12 41 41 H 1.08995 * 109.98399 * 16.46326 * 15 13 12 42 42 H 0.97001 * 119.99018 * 179.97438 * 20 19 17 43 43 H 1.09003 * 109.76322 * 120.92837 * 25 16 15 44 44 H 1.09007 * 109.75962 * 241.63089 * 25 16 15 45 45 H 1.07996 * 119.92529 * 179.97438 * 28 7 6 46 46 H 1.07997 * 119.52142 * 179.70247 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3105 1.0904 0.0000 4 7 3.5789 0.6840 0.0006 5 6 3.6104 -0.6421 -0.0010 6 6 4.6753 -1.5609 -0.0029 7 6 4.3945 -2.9165 -0.0037 8 6 5.4906 -3.9059 -0.0062 9 8 5.3138 -5.0103 0.4706 10 7 6.6871 -3.5848 -0.5371 11 6 7.0596 -2.2647 -1.0767 12 6 8.1959 -2.5565 -2.0875 13 6 8.9671 -3.6989 -1.3758 14 1 9.5692 -4.3040 -2.0535 15 6 9.7776 -3.0857 -0.2181 16 7 9.5947 -3.9660 0.9412 17 6 10.3985 -3.9928 2.0496 18 1 11.2476 -3.3288 2.1170 19 6 10.1219 -4.8734 3.0864 20 7 9.0873 -5.6829 3.0040 21 14 11.2188 -4.9104 4.5979 22 1 12.3059 -3.9103 4.4453 23 1 10.4131 -4.5852 5.8023 24 1 11.8090 -6.2648 4.7482 25 6 8.4170 -4.8129 0.7274 26 6 7.8345 -4.4901 -0.6667 27 1 7.5696 -5.3885 -1.2244 28 6 3.0428 -3.3442 -0.0033 29 6 2.0477 -2.4388 -0.0025 30 7 2.3165 -1.0982 -0.0005 31 1 -0.3633 -0.0006 1.0277 32 1 -0.3634 0.8902 -0.5134 33 1 -0.3633 -0.8899 -0.5142 34 1 1.9781 2.1180 0.0007 35 1 5.6979 -1.2136 -0.0039 36 1 6.2093 -1.8081 -1.5831 37 1 7.4196 -1.6161 -0.2780 38 1 7.7917 -2.8944 -3.0418 39 1 8.8315 -1.6815 -2.2232 40 1 10.8329 -3.0376 -0.4866 41 1 9.4047 -2.0872 0.0098 42 1 8.8943 -6.2984 3.7284 43 1 8.7074 -5.8631 0.7600 44 1 7.6737 -4.6122 1.4991 45 1 2.8115 -4.3991 -0.0043 46 1 1.0216 -2.7758 -0.0071 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001075791514.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:07 Heat of formation + Delta-G solvation = 84.105846 kcal Electronic energy + Delta-G solvation = -29887.363003 eV Core-core repulsion = 25971.816424 eV Total energy + Delta-G solvation = -3915.546579 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.93168 -41.77059 -39.63053 -37.97485 -36.68450 -35.17184 -33.93675 -32.53430 -32.29726 -31.31927 -30.33399 -28.39719 -27.52220 -26.69774 -25.29764 -24.42432 -23.51550 -22.54568 -22.13018 -21.09468 -20.29913 -19.09436 -18.64326 -18.08343 -17.85285 -17.29473 -17.09290 -16.86011 -16.26367 -15.82162 -15.65863 -15.55872 -15.12387 -14.76462 -14.58993 -14.44958 -14.21989 -14.06219 -13.95311 -13.83354 -13.45219 -13.34261 -13.03329 -12.99533 -12.95183 -12.83336 -12.80777 -12.38862 -12.13408 -11.96160 -11.87641 -11.77116 -11.56023 -11.42469 -11.20623 -11.09568 -10.74911 -9.92928 -9.71964 -8.91003 -8.79465 -7.85221 -5.23562 -0.64364 0.01624 1.41350 1.43396 1.50357 1.52645 1.53882 1.85187 1.89417 2.43951 2.46782 2.98010 3.31084 3.31696 3.42224 3.54057 3.63305 3.69138 3.77387 3.88862 3.96523 4.05967 4.17217 4.29881 4.31290 4.39274 4.45846 4.47426 4.53504 4.68586 4.72524 4.79382 4.80786 4.88708 4.91834 5.03024 5.08039 5.11838 5.14700 5.23428 5.35911 5.39489 5.44064 5.58425 5.61281 5.77588 5.97575 6.17826 6.44744 6.75318 7.01470 7.07653 7.77729 8.39244 9.23212 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014780 B = 0.003093 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.042469 B = 9049.739611 C = 9468.017595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.052 4.052 3 C 0.016 3.984 4 N -0.508 5.508 5 C 0.180 3.820 6 C -0.047 4.047 7 C -0.116 4.116 8 C 0.565 3.435 9 O -0.572 6.572 10 N -0.595 5.595 11 C 0.084 3.916 12 C -0.106 4.106 13 C -0.096 4.096 14 H 0.122 0.878 15 C 0.133 3.867 16 N -0.624 5.624 17 C -0.239 4.239 18 H 0.089 0.911 19 C -0.073 4.073 20 N -0.952 5.952 21 Si 0.980 3.020 22 H -0.259 1.259 23 H -0.297 1.297 24 H -0.292 1.292 25 C 0.195 3.805 26 C 0.118 3.882 27 H 0.085 0.915 28 C -0.109 4.109 29 C 0.062 3.938 30 N -0.358 5.358 31 H 0.084 0.916 32 H 0.107 0.893 33 H 0.079 0.921 34 H 0.211 0.789 35 H 0.165 0.835 36 H 0.103 0.897 37 H 0.067 0.933 38 H 0.102 0.898 39 H 0.114 0.886 40 H 0.047 0.953 41 H 0.029 0.971 42 H 0.242 0.758 43 H 0.003 0.997 44 H 0.001 0.999 45 H 0.167 0.833 46 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.844 13.011 -14.500 26.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.167 4.167 3 C -0.136 4.136 4 N -0.228 5.228 5 C -0.060 4.060 6 C -0.067 4.067 7 C -0.125 4.125 8 C 0.355 3.645 9 O -0.452 6.452 10 N -0.326 5.326 11 C -0.038 4.038 12 C -0.144 4.144 13 C -0.115 4.115 14 H 0.140 0.860 15 C 0.009 3.991 16 N -0.350 5.350 17 C -0.368 4.368 18 H 0.107 0.893 19 C -0.266 4.266 20 N -0.601 5.601 21 Si 0.808 3.192 22 H -0.183 1.183 23 H -0.225 1.225 24 H -0.219 1.219 25 C 0.069 3.931 26 C 0.013 3.987 27 H 0.103 0.897 28 C -0.129 4.129 29 C -0.058 4.058 30 N -0.031 5.031 31 H 0.103 0.897 32 H 0.125 0.875 33 H 0.098 0.902 34 H 0.228 0.772 35 H 0.182 0.818 36 H 0.121 0.879 37 H 0.085 0.915 38 H 0.120 0.880 39 H 0.133 0.867 40 H 0.066 0.934 41 H 0.047 0.953 42 H 0.052 0.948 43 H 0.022 0.978 44 H 0.019 0.981 45 H 0.185 0.815 46 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -17.318 12.838 -14.052 25.733 hybrid contribution 0.193 -1.225 1.623 2.043 sum -17.126 11.612 -12.429 24.137 Atomic orbital electron populations 1.20404 0.82989 1.05367 1.04102 1.22121 0.96700 0.84251 1.13619 1.23012 0.87006 1.00542 1.03071 1.70619 1.23881 1.06431 1.21884 1.20647 0.84548 0.91033 1.09816 1.21284 0.99014 0.89784 0.96638 1.19834 0.94463 0.92219 1.05951 1.18088 0.81857 0.86897 0.77663 1.90810 1.82709 1.24785 1.46920 1.48359 1.10989 1.14084 1.59216 1.22982 0.99670 0.83995 0.97107 1.22837 0.95391 0.98654 0.97507 1.23160 0.94609 0.97319 0.96445 0.85990 1.21611 0.98347 0.93062 0.86104 1.44521 1.29968 1.42684 1.17857 1.19524 1.06209 1.16759 0.94331 0.89315 1.25771 0.99872 0.98891 1.02024 1.70297 1.30454 1.26328 1.33017 0.84986 0.78031 0.77449 0.78747 1.18264 1.22486 1.21868 1.20933 0.87785 0.92711 0.91674 1.22631 0.85746 0.93570 0.96727 0.89706 1.20852 0.89263 1.01682 1.01153 1.21957 1.02614 0.79004 1.02216 1.42992 1.08509 1.06736 1.44824 0.89717 0.87468 0.90187 0.77235 0.81752 0.87897 0.91487 0.87996 0.86742 0.93437 0.95339 0.94823 0.97840 0.98065 0.81540 0.77136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.49 10.30 71.24 0.73 0.24 16 2 C -0.05 -0.88 7.02 41.20 0.29 -0.59 16 3 C 0.02 0.32 11.75 83.84 0.99 1.31 16 4 N -0.51 -14.07 11.31 -194.41 -2.20 -16.27 16 5 C 0.18 4.97 7.79 133.97 1.04 6.01 16 6 C -0.05 -1.33 8.04 22.91 0.18 -1.15 16 7 C -0.12 -3.53 5.73 -19.87 -0.11 -3.65 16 8 C 0.56 21.97 7.27 86.73 0.63 22.60 16 9 O -0.57 -27.42 16.52 -4.00 -0.07 -27.48 16 10 N -0.59 -21.29 2.98 -787.79 -2.35 -23.64 16 11 C 0.08 2.20 4.57 86.84 0.40 2.60 16 12 C -0.11 -2.22 6.34 31.96 0.20 -2.02 16 13 C -0.10 -2.92 4.28 -8.92 -0.04 -2.96 16 14 H 0.12 3.20 8.14 -2.39 -0.02 3.18 16 15 C 0.13 5.18 6.46 86.70 0.56 5.74 16 16 N -0.62 -33.09 3.38 -696.15 -2.35 -35.44 16 17 C -0.24 -13.87 10.25 84.03 0.86 -13.01 16 18 H 0.09 4.83 7.83 -2.91 -0.02 4.81 16 19 C -0.07 -4.39 5.48 84.86 0.47 -3.93 16 20 N -0.95 -62.17 10.24 21.65 0.22 -61.95 16 21 Si 0.98 48.19 29.55 68.60 2.03 50.22 16 22 H -0.26 -11.68 7.11 99.48 0.71 -10.98 16 23 H -0.30 -14.81 7.11 99.48 0.71 -14.11 16 24 H -0.29 -14.28 7.11 99.48 0.71 -13.57 16 25 C 0.20 10.57 4.91 86.87 0.43 11.00 16 26 C 0.12 4.66 3.68 46.25 0.17 4.83 16 27 H 0.08 3.29 8.14 -2.39 -0.02 3.27 16 28 C -0.11 -2.59 9.55 22.30 0.21 -2.38 16 29 C 0.06 1.12 10.80 83.08 0.90 2.01 16 30 N -0.36 -7.76 2.94 -339.15 -1.00 -8.76 16 31 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.11 0.32 8.14 -2.39 -0.02 0.31 16 33 H 0.08 0.37 8.12 -2.38 -0.02 0.35 16 34 H 0.21 2.53 8.06 -2.91 -0.02 2.51 16 35 H 0.17 4.63 4.58 -2.91 -0.01 4.62 16 36 H 0.10 2.23 6.11 -2.39 -0.01 2.22 16 37 H 0.07 1.92 6.43 -2.39 -0.02 1.90 16 38 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.11 1.84 8.07 -2.39 -0.02 1.82 16 40 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.03 1.07 6.58 -2.39 -0.02 1.06 16 42 H 0.24 15.53 8.31 -92.71 -0.77 14.76 16 43 H 0.00 0.21 7.33 -2.39 -0.02 0.20 16 44 H 0.00 0.07 6.70 -2.38 -0.02 0.06 16 45 H 0.17 3.69 7.92 -2.91 -0.02 3.66 16 46 H 0.21 1.73 8.04 -2.91 -0.02 1.71 16 Total: -1.00 -88.26 365.39 3.20 -85.06 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: 1.01 Total: 11.61 kcal Atomic # 6 Polarization: 18.74 SS G_CDS: 7.91 Total: 26.64 kcal Atomic # 7 Polarization: -138.37 SS G_CDS: -7.68 Total: -146.05 kcal Atomic # 8 Polarization: -27.42 SS G_CDS: -0.07 Total: -27.48 kcal Atomic # 14 Polarization: 48.19 SS G_CDS: 2.03 Total: 50.22 kcal Total: -88.26 3.20 -85.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075791514.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.164 kcal (2) G-P(sol) polarization free energy of solvation -88.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.059 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds