Wall clock time and date at job start Sat Apr 11 2020 06:04:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.40399 * 120.21549 * 2 1 4 4 C 1.35025 * 120.43524 * 180.02562 * 3 2 1 5 5 N 1.36530 * 120.60366 * 0.02562 * 4 3 2 6 6 C 1.36252 * 132.78419 * 180.02562 * 5 4 3 7 7 N 1.30179 * 109.81952 * 179.70201 * 6 5 4 8 8 C 1.34895 * 109.73476 * 0.45216 * 7 6 5 9 9 C 1.46293 * 126.49520 * 179.81758 * 8 7 6 10 10 O 1.21768 * 119.99638 * 179.68846 * 9 8 7 11 11 N 1.34776 * 119.99989 * 359.69299 * 9 8 7 12 12 C 1.47345 * 125.52537 * 359.97281 * 11 9 8 13 13 C 1.54949 * 104.90120 * 156.75894 * 12 11 9 14 14 C 1.54793 * 101.45493 * 37.25594 * 13 12 11 15 15 H 1.09000 * 112.84504 * 85.50534 * 14 13 12 16 16 C 1.53513 * 109.68873 * 212.19312 * 14 13 12 17 17 N 1.48403 * 106.16333 * 84.43335 * 16 14 13 18 18 C 1.36933 * 125.07409 * 197.28929 * 17 16 14 19 19 H 1.08005 * 120.00200 * 355.28599 * 18 17 16 20 20 C 1.38811 * 120.00342 * 175.29555 * 18 17 16 21 21 N 1.31622 * 120.00096 * 7.30941 * 20 18 17 22 22 Si 1.86803 * 120.00288 * 187.31516 * 20 18 17 23 23 H 1.48493 * 109.47183 * 94.98408 * 22 20 18 24 24 H 1.48498 * 109.46818 * 214.98443 * 22 20 18 25 25 H 1.48500 * 109.46655 * 334.97900 * 22 20 18 26 26 C 1.46493 * 109.64002 * 17.28137 * 17 16 14 27 27 C 1.47252 * 125.52070 * 180.02562 * 11 9 8 28 28 H 1.09002 * 111.94577 * 56.61866 * 27 11 9 29 29 C 1.37277 * 120.03177 * 359.97438 * 5 4 3 30 30 C 1.36330 * 120.22548 * 180.02562 * 2 1 3 31 31 H 1.08997 * 109.47079 * 90.00766 * 1 2 3 32 32 H 1.09002 * 109.46830 * 210.00041 * 1 2 3 33 33 H 1.08996 * 109.47085 * 330.00024 * 1 2 3 34 34 H 1.07992 * 119.78020 * 0.02573 * 3 2 1 35 35 H 1.07999 * 119.69814 * 180.02562 * 4 3 2 36 36 H 1.07993 * 125.08890 * 359.97438 * 6 5 4 37 37 H 1.09004 * 110.35436 * 37.90338 * 12 11 9 38 38 H 1.09004 * 110.35605 * 275.61636 * 12 11 9 39 39 H 1.08994 * 111.02935 * 279.21147 * 13 12 11 40 40 H 1.08999 * 111.02827 * 155.29912 * 13 12 11 41 41 H 1.09000 * 109.91837 * 204.18115 * 16 14 13 42 42 H 1.08994 * 109.91749 * 325.48290 * 16 14 13 43 43 H 0.96999 * 120.00556 * 180.02562 * 21 20 18 44 44 H 1.08997 * 109.72180 * 238.32160 * 26 17 16 45 45 H 1.09006 * 109.71297 * 117.77475 * 26 17 16 46 46 H 1.08004 * 120.39580 * 359.97438 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2136 1.2132 0.0000 4 6 3.5638 1.2184 -0.0005 5 7 4.2634 0.0460 -0.0016 6 6 5.5963 -0.2364 -0.0018 7 7 5.7743 -1.5260 0.0034 8 6 4.5789 -2.1508 -0.0027 9 6 4.3525 -3.5961 -0.0035 10 8 3.2164 -4.0344 -0.0036 11 7 5.4014 -4.4425 -0.0040 12 6 6.8207 -4.0469 -0.0044 13 6 7.5742 -5.2653 0.5860 14 6 6.7733 -6.4442 -0.0181 15 1 7.1171 -6.7230 -1.0142 16 6 6.7716 -7.6249 0.9630 17 7 5.6615 -7.3700 1.9143 18 6 5.5128 -7.9795 3.1315 19 1 6.1939 -8.7627 3.4301 20 6 4.4865 -7.5909 3.9815 21 7 3.5717 -6.7417 3.5637 22 14 4.4036 -8.2729 5.7186 23 1 5.0603 -7.3252 6.6544 24 1 2.9831 -8.4531 6.1124 25 1 5.1014 -9.5828 5.7698 26 6 4.7518 -6.3686 1.3526 27 6 5.3146 -5.9124 -0.0053 28 1 4.7355 -6.2856 -0.8501 29 6 3.5948 -1.1530 -0.0016 30 6 2.1933 -1.1780 -0.0005 31 1 -0.3633 -0.0001 -1.0276 32 1 -0.3633 -0.8900 0.5139 33 1 -0.3633 0.8900 0.5138 34 1 1.6736 2.1484 0.0004 35 1 4.0953 2.1586 -0.0001 36 1 6.3868 0.4994 -0.0016 37 1 6.9697 -3.1684 0.6235 38 1 7.1588 -3.8485 -1.0216 39 1 7.5170 -5.2707 1.6744 40 1 8.6110 -5.2842 0.2503 41 1 6.6087 -8.5570 0.4220 42 1 7.7202 -7.6641 1.4984 43 1 2.8548 -6.4699 4.1577 44 1 4.6822 -5.5153 2.0272 45 1 3.7637 -6.8070 1.2123 46 1 1.6635 -2.1191 -0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075970627.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:17 Heat of formation + Delta-G solvation = 97.882656 kcal Electronic energy + Delta-G solvation = -29954.602285 eV Core-core repulsion = 26039.653113 eV Total energy + Delta-G solvation = -3914.949172 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.89465 -39.73352 -38.00779 -37.36471 -34.63983 -34.08933 -32.09397 -31.29600 -30.44584 -29.85035 -28.48519 -27.19265 -26.27828 -24.45423 -23.84589 -23.16332 -22.12246 -21.68561 -20.31309 -19.48191 -18.78127 -17.76693 -16.77503 -16.71912 -16.23080 -16.05769 -15.66898 -15.25327 -14.86063 -14.44858 -14.37823 -14.22900 -13.92197 -13.66530 -13.32482 -13.25576 -12.72386 -12.52644 -12.48680 -12.24680 -11.97997 -11.77719 -11.73703 -11.58454 -11.33571 -10.96955 -10.86865 -10.70755 -10.60178 -10.46861 -10.16923 -9.97417 -9.85452 -9.71568 -9.57111 -9.49258 -9.42832 -8.44470 -7.98968 -7.50468 -6.68462 -5.56416 -2.91065 0.52721 0.97204 2.37128 2.47706 3.12340 3.47808 3.51510 3.53691 3.55278 3.96597 4.16440 4.35628 4.46920 4.51446 4.60052 4.69867 4.90261 4.98717 5.15208 5.23408 5.37459 5.37760 5.42169 5.44489 5.55759 5.62377 5.75213 5.78989 5.84777 5.87600 5.98464 6.10443 6.12947 6.20610 6.26252 6.36643 6.38187 6.41435 6.60538 6.73327 6.76616 6.85485 6.99117 7.05502 7.60200 7.71082 7.81418 8.04890 8.19641 8.41705 8.80019 9.35449 9.95469 10.60584 11.53207 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012466 B = 0.003531 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2245.486836 B = 7926.813784 C = 9228.167308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.089 4.089 3 C -0.128 4.128 4 C 0.048 3.952 5 N -0.368 5.368 6 C 0.136 3.864 7 N -0.415 5.415 8 C -0.045 4.045 9 C 0.614 3.386 10 O -0.536 6.536 11 N -0.592 5.592 12 C 0.109 3.891 13 C -0.124 4.124 14 C -0.112 4.112 15 H 0.085 0.915 16 C 0.142 3.858 17 N -0.604 5.604 18 C -0.232 4.232 19 H 0.078 0.922 20 C -0.006 4.006 21 N -0.912 5.912 22 Si 0.907 3.093 23 H -0.290 1.290 24 H -0.292 1.292 25 H -0.281 1.281 26 C 0.182 3.818 27 C 0.117 3.883 28 H 0.079 0.921 29 C 0.078 3.922 30 C -0.066 4.066 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.149 0.851 35 H 0.168 0.832 36 H 0.215 0.785 37 H 0.091 0.909 38 H 0.058 0.942 39 H 0.083 0.917 40 H 0.073 0.927 41 H 0.020 0.980 42 H 0.041 0.959 43 H 0.251 0.749 44 H 0.056 0.944 45 H 0.043 0.957 46 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.518 19.613 -11.090 22.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.093 4.093 3 C -0.149 4.149 4 C -0.073 4.073 5 N -0.040 5.040 6 C -0.140 4.140 7 N -0.130 5.130 8 C -0.179 4.179 9 C 0.402 3.598 10 O -0.413 6.413 11 N -0.324 5.324 12 C -0.014 4.014 13 C -0.162 4.162 14 C -0.131 4.131 15 H 0.103 0.897 16 C 0.016 3.984 17 N -0.332 5.332 18 C -0.360 4.360 19 H 0.096 0.904 20 C -0.203 4.203 21 N -0.559 5.559 22 Si 0.738 3.262 23 H -0.218 1.218 24 H -0.218 1.218 25 H -0.207 1.207 26 C 0.057 3.943 27 C 0.013 3.987 28 H 0.097 0.903 29 C -0.034 4.034 30 C -0.085 4.085 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.088 0.912 34 H 0.167 0.833 35 H 0.185 0.815 36 H 0.231 0.769 37 H 0.109 0.891 38 H 0.076 0.924 39 H 0.102 0.898 40 H 0.092 0.908 41 H 0.037 0.963 42 H 0.059 0.941 43 H 0.062 0.938 44 H 0.074 0.926 45 H 0.061 0.939 46 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 1.605 19.089 -10.905 22.042 hybrid contribution -0.624 0.339 0.967 1.200 sum 0.982 19.428 -9.938 21.844 Atomic orbital electron populations 1.20764 0.89750 1.03489 1.02763 1.19929 0.97210 0.92104 1.00015 1.20793 0.92321 0.99277 1.02480 1.21604 0.93034 0.88541 1.04113 1.42998 1.08567 1.06291 1.46098 1.25062 0.82380 0.94326 1.12185 1.70166 1.25651 1.03781 1.13352 1.20553 0.87349 0.93682 1.16342 1.16034 0.83974 0.82684 0.77114 1.90832 1.21549 1.77395 1.51572 1.48233 1.05988 1.06498 1.71720 1.22395 0.80097 0.98379 1.00495 1.22801 0.97876 0.93573 1.01930 1.22941 0.94575 0.96573 0.99037 0.89650 1.21398 0.92597 0.93826 0.90539 1.44564 1.24147 1.47337 1.17145 1.19018 1.11656 1.14611 0.90717 0.90437 1.24846 0.97561 0.99517 0.98366 1.70036 1.14628 1.36654 1.34537 0.86172 0.76824 0.78145 0.85095 1.21780 1.21846 1.20661 1.21233 0.92252 0.92935 0.87894 1.22863 0.96520 0.78335 1.00957 0.90292 1.19230 0.93217 0.85019 1.05982 1.20727 0.89801 1.00127 0.97859 0.90700 0.90635 0.91224 0.83342 0.81493 0.76867 0.89076 0.92395 0.89793 0.90811 0.96277 0.94125 0.93804 0.92560 0.93931 0.82178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.86 10.03 36.01 0.36 -0.49 16 2 C -0.09 -0.92 5.89 -104.49 -0.62 -1.54 16 3 C -0.13 -1.00 9.67 -39.91 -0.39 -1.39 16 4 C 0.05 0.39 10.95 -16.60 -0.18 0.21 16 5 N -0.37 -4.38 2.94 -62.19 -0.18 -4.56 16 6 C 0.14 1.58 12.73 -89.53 -1.14 0.44 16 7 N -0.41 -6.43 8.28 -10.53 -0.09 -6.51 16 8 C -0.04 -0.81 6.88 -82.57 -0.57 -1.38 16 9 C 0.61 13.11 7.52 -13.02 -0.10 13.01 16 10 O -0.54 -12.89 15.84 5.13 0.08 -12.81 16 11 N -0.59 -12.03 2.83 -163.43 -0.46 -12.49 16 12 C 0.11 1.84 6.09 -2.55 -0.02 1.82 16 13 C -0.12 -2.06 6.31 -24.76 -0.16 -2.22 16 14 C -0.11 -2.02 3.92 -88.21 -0.35 -2.37 16 15 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 16 C 0.14 3.02 6.65 -2.73 -0.02 3.00 16 17 N -0.60 -16.22 3.42 -170.82 -0.58 -16.80 16 18 C -0.23 -6.73 10.24 -15.06 -0.15 -6.88 16 19 H 0.08 2.16 7.84 -52.48 -0.41 1.74 16 20 C -0.01 -0.18 5.47 -17.43 -0.10 -0.27 16 21 N -0.91 -28.67 10.28 55.49 0.57 -28.10 16 22 Si 0.91 23.04 29.56 -169.99 -5.02 18.02 16 23 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 24 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 25 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 26 C 0.18 4.89 4.64 -3.57 -0.02 4.87 16 27 C 0.12 2.50 3.82 -65.85 -0.25 2.25 16 28 H 0.08 1.67 8.14 -51.93 -0.42 1.25 16 29 C 0.08 1.21 6.72 -83.99 -0.56 0.65 16 30 C -0.07 -0.93 9.38 -39.54 -0.37 -1.30 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.63 8.08 -51.93 -0.42 0.21 16 33 H 0.07 0.41 8.10 -51.93 -0.42 -0.01 16 34 H 0.15 0.65 8.06 -52.49 -0.42 0.22 16 35 H 0.17 0.63 8.06 -52.49 -0.42 0.21 16 36 H 0.21 1.41 8.06 -52.49 -0.42 0.99 16 37 H 0.09 1.55 6.19 -51.93 -0.32 1.23 16 38 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.08 1.65 7.94 -51.93 -0.41 1.24 16 40 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.04 0.83 7.94 -51.93 -0.41 0.41 16 43 H 0.25 7.72 8.31 -40.82 -0.34 7.38 16 44 H 0.06 1.72 6.83 -51.93 -0.35 1.37 16 45 H 0.04 1.30 7.58 -51.93 -0.39 0.91 16 46 H 0.16 2.49 7.17 -52.48 -0.38 2.11 16 LS Contribution 370.39 15.07 5.58 5.58 Total: -1.00 -37.42 370.39 -11.19 -48.60 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -6.46 Total: 0.67 kcal Atomic # 6 Polarization: 13.04 SS G_CDS: -4.62 Total: 8.42 kcal Atomic # 7 Polarization: -67.73 SS G_CDS: -0.75 Total: -68.48 kcal Atomic # 8 Polarization: -12.89 SS G_CDS: 0.08 Total: -12.81 kcal Atomic # 14 Polarization: 23.04 SS G_CDS: -5.02 Total: 18.02 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -37.42 -11.19 -48.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075970627.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.486 kcal (2) G-P(sol) polarization free energy of solvation -37.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds