Wall clock time and date at job start Sat Apr 11 2020 06:04:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.40399 * 120.21549 * 2 1 4 4 C 1.35025 * 120.43524 * 180.02562 * 3 2 1 5 5 N 1.36530 * 120.60366 * 0.02562 * 4 3 2 6 6 C 1.36252 * 132.78419 * 180.02562 * 5 4 3 7 7 N 1.30179 * 109.81952 * 179.70201 * 6 5 4 8 8 C 1.34895 * 109.73476 * 0.45216 * 7 6 5 9 9 C 1.46293 * 126.49520 * 179.81758 * 8 7 6 10 10 O 1.21768 * 119.99638 * 179.68846 * 9 8 7 11 11 N 1.34776 * 119.99989 * 359.69299 * 9 8 7 12 12 C 1.47345 * 125.52537 * 359.97281 * 11 9 8 13 13 C 1.54949 * 104.90120 * 156.75894 * 12 11 9 14 14 C 1.54793 * 101.45493 * 37.25594 * 13 12 11 15 15 H 1.09000 * 112.84504 * 85.50534 * 14 13 12 16 16 C 1.53513 * 109.68873 * 212.19312 * 14 13 12 17 17 N 1.48403 * 106.16333 * 84.43335 * 16 14 13 18 18 C 1.36933 * 125.07409 * 197.28929 * 17 16 14 19 19 H 1.08005 * 120.00200 * 355.28599 * 18 17 16 20 20 C 1.38811 * 120.00342 * 175.29555 * 18 17 16 21 21 N 1.31622 * 120.00096 * 7.30941 * 20 18 17 22 22 Si 1.86803 * 120.00288 * 187.31516 * 20 18 17 23 23 H 1.48493 * 109.47183 * 94.98408 * 22 20 18 24 24 H 1.48498 * 109.46818 * 214.98443 * 22 20 18 25 25 H 1.48500 * 109.46655 * 334.97900 * 22 20 18 26 26 C 1.46493 * 109.64002 * 17.28137 * 17 16 14 27 27 C 1.47252 * 125.52070 * 180.02562 * 11 9 8 28 28 H 1.09002 * 111.94577 * 56.61866 * 27 11 9 29 29 C 1.37277 * 120.03177 * 359.97438 * 5 4 3 30 30 C 1.36330 * 120.22548 * 180.02562 * 2 1 3 31 31 H 1.08997 * 109.47079 * 90.00766 * 1 2 3 32 32 H 1.09002 * 109.46830 * 210.00041 * 1 2 3 33 33 H 1.08996 * 109.47085 * 330.00024 * 1 2 3 34 34 H 1.07992 * 119.78020 * 0.02573 * 3 2 1 35 35 H 1.07999 * 119.69814 * 180.02562 * 4 3 2 36 36 H 1.07993 * 125.08890 * 359.97438 * 6 5 4 37 37 H 1.09004 * 110.35436 * 37.90338 * 12 11 9 38 38 H 1.09004 * 110.35605 * 275.61636 * 12 11 9 39 39 H 1.08994 * 111.02935 * 279.21147 * 13 12 11 40 40 H 1.08999 * 111.02827 * 155.29912 * 13 12 11 41 41 H 1.09000 * 109.91837 * 204.18115 * 16 14 13 42 42 H 1.08994 * 109.91749 * 325.48290 * 16 14 13 43 43 H 0.96999 * 120.00556 * 180.02562 * 21 20 18 44 44 H 1.08997 * 109.72180 * 238.32160 * 26 17 16 45 45 H 1.09006 * 109.71297 * 117.77475 * 26 17 16 46 46 H 1.08004 * 120.39580 * 359.97438 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2136 1.2132 0.0000 4 6 3.5638 1.2184 -0.0005 5 7 4.2634 0.0460 -0.0016 6 6 5.5963 -0.2364 -0.0018 7 7 5.7743 -1.5260 0.0034 8 6 4.5789 -2.1508 -0.0027 9 6 4.3525 -3.5961 -0.0035 10 8 3.2164 -4.0344 -0.0036 11 7 5.4014 -4.4425 -0.0040 12 6 6.8207 -4.0469 -0.0044 13 6 7.5742 -5.2653 0.5860 14 6 6.7733 -6.4442 -0.0181 15 1 7.1171 -6.7230 -1.0142 16 6 6.7716 -7.6249 0.9630 17 7 5.6615 -7.3700 1.9143 18 6 5.5128 -7.9795 3.1315 19 1 6.1939 -8.7627 3.4301 20 6 4.4865 -7.5909 3.9815 21 7 3.5717 -6.7417 3.5637 22 14 4.4036 -8.2729 5.7186 23 1 5.0603 -7.3252 6.6544 24 1 2.9831 -8.4531 6.1124 25 1 5.1014 -9.5828 5.7698 26 6 4.7518 -6.3686 1.3526 27 6 5.3146 -5.9124 -0.0053 28 1 4.7355 -6.2856 -0.8501 29 6 3.5948 -1.1530 -0.0016 30 6 2.1933 -1.1780 -0.0005 31 1 -0.3633 -0.0001 -1.0276 32 1 -0.3633 -0.8900 0.5139 33 1 -0.3633 0.8900 0.5138 34 1 1.6736 2.1484 0.0004 35 1 4.0953 2.1586 -0.0001 36 1 6.3868 0.4994 -0.0016 37 1 6.9697 -3.1684 0.6235 38 1 7.1588 -3.8485 -1.0216 39 1 7.5170 -5.2707 1.6744 40 1 8.6110 -5.2842 0.2503 41 1 6.6087 -8.5570 0.4220 42 1 7.7202 -7.6641 1.4984 43 1 2.8548 -6.4699 4.1577 44 1 4.6822 -5.5153 2.0272 45 1 3.7637 -6.8070 1.2123 46 1 1.6635 -2.1191 -0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001075970627.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:16 Heat of formation + Delta-G solvation = 74.016898 kcal Electronic energy + Delta-G solvation = -29955.637182 eV Core-core repulsion = 26039.653113 eV Total energy + Delta-G solvation = -3915.984069 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.85629 -41.33395 -39.21399 -38.71406 -36.50670 -35.05091 -34.01932 -32.28559 -32.14984 -30.92261 -30.14235 -28.62955 -27.63099 -26.44257 -24.93600 -24.34058 -23.07939 -22.93928 -22.19903 -20.93258 -20.23779 -19.05568 -18.76774 -17.66338 -17.58145 -17.11022 -17.02381 -16.70952 -16.29793 -16.00383 -15.61377 -15.36703 -15.30466 -14.97457 -14.87989 -14.40513 -14.32294 -14.10562 -13.67772 -13.45646 -13.38477 -13.19286 -12.97710 -12.93191 -12.72927 -12.68093 -12.61967 -12.50156 -12.11941 -11.94335 -11.87309 -11.55910 -11.47012 -11.45069 -11.26464 -10.99537 -10.69521 -10.35298 -9.61276 -8.91558 -8.51121 -7.84285 -5.22810 -0.39697 0.08924 1.30875 1.40139 1.44117 1.48283 1.53433 2.09177 2.26949 2.47582 2.58458 3.27143 3.31892 3.41584 3.54741 3.67596 3.69231 3.73932 3.81266 3.82284 4.03379 4.11386 4.22892 4.35205 4.40196 4.50816 4.51406 4.61829 4.67690 4.75768 4.81655 4.84100 4.90602 4.95751 4.99767 5.09766 5.12321 5.19408 5.22236 5.34622 5.40443 5.42948 5.51359 5.53176 5.62450 5.80472 6.16625 6.17955 6.55042 6.70441 7.05685 7.26025 7.76262 8.39468 9.24309 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012466 B = 0.003531 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2245.486836 B = 7926.813784 C = 9228.167308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.050 4.050 3 C -0.138 4.138 4 C 0.070 3.930 5 N -0.371 5.371 6 C 0.158 3.842 7 N -0.437 5.437 8 C -0.114 4.114 9 C 0.600 3.400 10 O -0.591 6.591 11 N -0.599 5.599 12 C 0.114 3.886 13 C -0.114 4.114 14 C -0.093 4.093 15 H 0.134 0.866 16 C 0.136 3.864 17 N -0.626 5.626 18 C -0.241 4.241 19 H 0.092 0.908 20 C -0.074 4.074 21 N -0.953 5.953 22 Si 0.981 3.019 23 H -0.287 1.287 24 H -0.299 1.299 25 H -0.258 1.258 26 C 0.208 3.792 27 C 0.117 3.883 28 H 0.074 0.926 29 C 0.080 3.920 30 C -0.136 4.136 31 H 0.091 0.909 32 H 0.057 0.943 33 H 0.102 0.898 34 H 0.200 0.800 35 H 0.228 0.772 36 H 0.271 0.729 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.046 0.954 40 H 0.124 0.876 41 H 0.032 0.968 42 H 0.058 0.942 43 H 0.241 0.759 44 H 0.005 0.995 45 H -0.019 1.019 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.230 23.534 -12.004 26.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.054 4.054 3 C -0.158 4.158 4 C -0.050 4.050 5 N -0.042 5.042 6 C -0.120 4.120 7 N -0.151 5.151 8 C -0.244 4.244 9 C 0.391 3.609 10 O -0.473 6.473 11 N -0.331 5.331 12 C -0.007 4.007 13 C -0.152 4.152 14 C -0.112 4.112 15 H 0.152 0.848 16 C 0.011 3.989 17 N -0.353 5.353 18 C -0.370 4.370 19 H 0.110 0.890 20 C -0.266 4.266 21 N -0.602 5.602 22 Si 0.809 3.191 23 H -0.214 1.214 24 H -0.226 1.226 25 H -0.182 1.182 26 C 0.082 3.918 27 C 0.012 3.988 28 H 0.092 0.908 29 C -0.035 4.035 30 C -0.156 4.156 31 H 0.110 0.890 32 H 0.077 0.923 33 H 0.121 0.879 34 H 0.217 0.783 35 H 0.244 0.756 36 H 0.286 0.714 37 H 0.106 0.894 38 H 0.104 0.896 39 H 0.065 0.935 40 H 0.142 0.858 41 H 0.050 0.950 42 H 0.076 0.924 43 H 0.050 0.950 44 H 0.024 0.976 45 H 0.000 1.000 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 4.402 22.964 -11.842 26.210 hybrid contribution -1.600 -0.640 1.222 2.112 sum 2.803 22.324 -10.620 24.880 Atomic orbital electron populations 1.20918 0.88019 1.04269 1.03988 1.20440 0.98619 0.91894 0.94458 1.21385 0.92653 0.99657 1.02122 1.22765 0.93586 0.88837 0.99847 1.43274 1.08714 1.06210 1.45978 1.26134 0.83125 0.93960 1.08749 1.69975 1.24875 1.05743 1.14503 1.20003 0.89535 0.92165 1.22726 1.16742 0.83451 0.84658 0.76027 1.90767 1.23564 1.78768 1.54181 1.48353 1.07536 1.05618 1.71568 1.22545 0.77876 0.98294 1.02014 1.22787 1.00321 0.92447 0.99601 1.23008 0.91934 0.95514 1.00731 0.84842 1.21682 0.91231 0.95623 0.90338 1.44895 1.25760 1.46966 1.17666 1.19547 1.11276 1.14554 0.91618 0.89005 1.25837 0.97452 1.00435 1.02902 1.70364 1.15386 1.38849 1.35623 0.85012 0.76389 0.78303 0.79399 1.21442 1.22564 1.18225 1.20676 0.90369 0.90763 0.89988 1.22641 0.98942 0.79979 0.97193 0.90809 1.19256 0.93541 0.86250 1.04429 1.20532 0.89961 1.00465 1.04622 0.89050 0.92347 0.87921 0.78327 0.75574 0.71360 0.89415 0.89582 0.93486 0.85806 0.94985 0.92355 0.94985 0.97638 1.00040 0.86095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.65 10.03 71.24 0.71 -0.93 16 2 C -0.05 -0.99 5.89 -19.78 -0.12 -1.11 16 3 C -0.14 -1.53 9.67 22.06 0.21 -1.32 16 4 C 0.07 0.77 10.95 83.22 0.91 1.68 16 5 N -0.37 -7.97 2.94 -350.67 -1.03 -9.00 16 6 C 0.16 3.21 12.73 179.97 2.29 5.50 16 7 N -0.44 -13.54 8.28 -187.24 -1.55 -15.09 16 8 C -0.11 -4.46 6.88 41.23 0.28 -4.18 16 9 C 0.60 28.72 7.52 86.34 0.65 29.37 16 10 O -0.59 -32.89 15.84 -4.57 -0.07 -32.97 16 11 N -0.60 -26.26 2.83 -789.17 -2.23 -28.49 16 12 C 0.11 3.83 6.09 86.88 0.53 4.36 16 13 C -0.11 -3.63 6.31 31.87 0.20 -3.43 16 14 C -0.09 -3.27 3.92 -9.23 -0.04 -3.31 16 15 H 0.13 3.55 8.14 -2.39 -0.02 3.53 16 16 C 0.14 5.70 6.65 86.18 0.57 6.28 16 17 N -0.63 -35.31 3.42 -694.35 -2.37 -37.68 16 18 C -0.24 -14.54 10.24 84.03 0.86 -13.68 16 19 H 0.09 5.14 7.84 -2.91 -0.02 5.12 16 20 C -0.07 -4.61 5.47 84.86 0.46 -4.15 16 21 N -0.95 -65.23 10.28 21.65 0.22 -65.01 16 22 Si 0.98 49.47 29.56 68.60 2.03 51.50 16 23 H -0.29 -14.23 7.11 99.48 0.71 -13.52 16 24 H -0.30 -15.25 7.11 99.48 0.71 -14.54 16 25 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 26 C 0.21 12.31 4.64 86.69 0.40 12.71 16 27 C 0.12 5.37 3.82 45.93 0.18 5.55 16 28 H 0.07 3.40 8.14 -2.39 -0.02 3.38 16 29 C 0.08 2.63 6.72 39.22 0.26 2.90 16 30 C -0.14 -4.25 9.38 22.30 0.21 -4.04 16 31 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.06 1.06 8.08 -2.39 -0.02 1.04 16 33 H 0.10 0.83 8.10 -2.39 -0.02 0.81 16 34 H 0.20 0.29 8.06 -2.91 -0.02 0.27 16 35 H 0.23 -0.19 8.06 -2.91 -0.02 -0.21 16 36 H 0.27 1.99 8.06 -2.91 -0.02 1.97 16 37 H 0.09 3.03 6.19 -2.38 -0.01 3.02 16 38 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 39 H 0.05 1.86 7.94 -2.39 -0.02 1.84 16 40 H 0.12 2.76 8.14 -2.39 -0.02 2.74 16 41 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.06 2.27 7.94 -2.39 -0.02 2.25 16 43 H 0.24 16.16 8.31 -92.71 -0.77 15.39 16 44 H 0.01 0.37 6.83 -2.39 -0.02 0.36 16 45 H -0.02 -1.29 7.58 -2.38 -0.02 -1.31 16 46 H 0.12 4.60 7.17 -2.91 -0.02 4.58 16 Total: -1.00 -98.90 370.39 4.57 -94.32 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: 0.99 Total: 10.21 kcal Atomic # 6 Polarization: 23.62 SS G_CDS: 8.59 Total: 32.21 kcal Atomic # 7 Polarization: -148.31 SS G_CDS: -6.96 Total: -155.27 kcal Atomic # 8 Polarization: -32.89 SS G_CDS: -0.07 Total: -32.97 kcal Atomic # 14 Polarization: 49.47 SS G_CDS: 2.03 Total: 51.50 kcal Total: -98.90 4.57 -94.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075970627.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.338 kcal (2) G-P(sol) polarization free energy of solvation -98.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds