Wall clock time and date at job start Sat Apr 11 2020 06:04:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.40570 * 120.13285 * 2 1 4 4 C 1.34851 * 120.33843 * 180.02562 * 3 2 1 5 5 N 1.36678 * 120.64339 * 0.02571 * 4 3 2 6 6 C 1.36196 * 132.29636 * 179.97438 * 5 4 3 7 7 C 1.36575 * 107.09145 * 180.02562 * 6 5 4 8 8 C 1.47592 * 125.91741 * 179.97438 * 7 6 5 9 9 O 1.21597 * 119.99910 * 0.02562 * 8 7 6 10 10 N 1.34779 * 120.00540 * 179.97438 * 8 7 6 11 11 C 1.47346 * 125.51659 * 0.03029 * 10 8 7 12 12 C 1.54860 * 104.90363 * 156.70641 * 11 10 8 13 13 C 1.54784 * 101.41862 * 37.27358 * 12 11 10 14 14 H 1.09006 * 113.40287 * 85.76078 * 13 12 11 15 15 C 1.53515 * 109.68354 * 212.86984 * 13 12 11 16 16 N 1.46654 * 107.04931 * 84.08984 * 15 13 12 17 17 C 1.36932 * 125.29109 * 197.35876 * 16 15 13 18 18 H 1.08001 * 120.00139 * 0.05381 * 17 16 15 19 19 C 1.38809 * 119.99912 * 180.02562 * 17 16 15 20 20 N 1.31614 * 120.00420 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99824 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47110 * 90.00233 * 21 19 17 23 23 H 1.48500 * 109.47152 * 209.99662 * 21 19 17 24 24 H 1.48499 * 109.47483 * 329.99752 * 21 19 17 25 25 C 1.46495 * 109.42081 * 17.38481 * 16 15 13 26 26 C 1.47250 * 125.52526 * 180.02562 * 10 8 7 27 27 H 1.08996 * 112.73273 * 56.17468 * 26 10 8 28 28 N 1.34586 * 108.16561 * 0.22522 * 7 6 5 29 29 C 1.32232 * 109.02203 * 359.62115 * 28 7 6 30 30 C 1.35894 * 120.13409 * 180.02562 * 2 1 3 31 31 H 1.09004 * 109.46922 * 269.98028 * 1 2 3 32 32 H 1.09005 * 109.47383 * 29.97535 * 1 2 3 33 33 H 1.09000 * 109.47507 * 149.97391 * 1 2 3 34 34 H 1.07997 * 119.83524 * 0.02562 * 3 2 1 35 35 H 1.08007 * 119.67898 * 180.02562 * 4 3 2 36 36 H 1.07998 * 126.45428 * 0.02562 * 6 5 4 37 37 H 1.09000 * 110.35579 * 275.57238 * 11 10 8 38 38 H 1.09001 * 110.35394 * 37.75501 * 11 10 8 39 39 H 1.09000 * 111.08611 * 279.22111 * 12 11 10 40 40 H 1.08996 * 110.99755 * 155.29035 * 12 11 10 41 41 H 1.08997 * 109.92419 * 324.74273 * 15 13 12 42 42 H 1.09000 * 109.92120 * 203.44008 * 15 13 12 43 43 H 0.96999 * 120.00413 * 180.02562 * 20 19 17 44 44 H 1.09002 * 109.71712 * 117.76499 * 25 16 15 45 45 H 1.09001 * 109.71175 * 238.36286 * 25 16 15 46 46 H 1.08004 * 120.32200 * 0.02562 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2127 1.2157 0.0000 4 6 3.5612 1.2206 -0.0005 5 7 4.2620 0.0472 -0.0016 6 6 5.5969 -0.2231 -0.0027 7 6 5.7312 -1.5823 -0.0040 8 6 7.0059 -2.3263 -0.0061 9 8 8.0618 -1.7233 -0.0063 10 7 6.9996 -3.6741 -0.0067 11 6 5.7962 -4.5245 -0.0061 12 6 6.2638 -5.8766 -0.5989 13 6 7.6840 -6.0008 0.0040 14 1 7.6948 -6.4480 0.9980 15 6 8.6041 -6.7288 -0.9860 16 7 9.1023 -5.7227 -1.9296 17 6 9.6679 -5.9917 -3.1473 18 1 9.7744 -7.0139 -3.4793 19 6 10.1039 -4.9505 -3.9552 20 7 9.9742 -3.7048 -3.5507 21 14 10.8749 -5.3175 -5.6166 22 1 9.8159 -5.3514 -6.6571 23 1 11.8617 -4.2587 -5.9491 24 1 11.5601 -6.6339 -5.5646 25 6 8.9013 -4.3852 -1.3667 26 6 8.1939 -4.5353 -0.0082 27 1 8.8636 -4.3281 0.8265 28 7 4.4999 -2.1256 -0.0087 29 6 3.6009 -1.1559 -0.0021 30 6 2.1892 -1.1753 -0.0005 31 1 -0.3633 -0.0004 1.0277 32 1 -0.3634 0.8902 -0.5135 33 1 -0.3634 -0.8897 -0.5142 34 1 1.6722 2.1507 0.0004 35 1 4.0926 2.1609 -0.0001 36 1 6.3982 0.5009 -0.0026 37 1 5.4302 -4.6627 1.0113 38 1 5.0198 -4.0831 -0.6310 39 1 6.3031 -5.8349 -1.6873 40 1 5.6236 -6.6924 -0.2632 41 1 8.0422 -7.4940 -1.5215 42 1 9.4389 -7.1828 -0.4521 43 1 10.2785 -2.9773 -4.1154 44 1 9.8655 -3.8963 -1.2271 45 1 8.2824 -3.7922 -2.0401 46 1 1.6567 -2.1149 -0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076001842.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:20 Heat of formation + Delta-G solvation = 100.807210 kcal Electronic energy + Delta-G solvation = -29587.563791 eV Core-core repulsion = 25672.741437 eV Total energy + Delta-G solvation = -3914.822354 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.95819 -39.86215 -38.16359 -37.26059 -34.82524 -34.35785 -32.13176 -30.94014 -30.50048 -30.17922 -28.55814 -27.30802 -26.55587 -24.63126 -23.97778 -23.06589 -22.08222 -21.64403 -20.35038 -19.46564 -18.69337 -17.98768 -16.95861 -16.80329 -16.40494 -16.17407 -15.42631 -15.32716 -14.84466 -14.67683 -14.42371 -14.14727 -14.03892 -13.77845 -13.41771 -13.29522 -12.89433 -12.60939 -12.54293 -12.40385 -12.04236 -11.93397 -11.75136 -11.57534 -11.36575 -11.00929 -10.90702 -10.88442 -10.70738 -10.56750 -10.18566 -9.96373 -9.84845 -9.74304 -9.61834 -9.52936 -9.00203 -8.48438 -8.08727 -7.91890 -6.70109 -5.57318 -2.93708 0.42801 1.02049 2.16142 2.32630 3.17584 3.42052 3.46993 3.51133 3.54005 3.84297 3.89789 4.18156 4.43723 4.45928 4.58886 4.75492 4.84917 5.00228 5.12401 5.17844 5.23556 5.24768 5.33723 5.42471 5.44115 5.57077 5.61832 5.74308 5.76168 5.84918 5.95097 5.97382 6.07807 6.12932 6.20516 6.25881 6.34429 6.40044 6.57641 6.72301 6.75277 6.76087 6.89932 7.00881 7.57681 7.70258 7.76441 8.02149 8.10844 8.40728 8.67599 9.33798 9.94959 10.58528 11.51914 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015304 B = 0.002924 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.201720 B = 9575.225870 C =10161.341445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.074 4.074 3 C -0.140 4.140 4 C 0.062 3.938 5 N -0.368 5.368 6 C -0.022 4.022 7 C 0.025 3.975 8 C 0.607 3.393 9 O -0.528 6.528 10 N -0.588 5.588 11 C 0.109 3.891 12 C -0.123 4.123 13 C -0.111 4.111 14 H 0.087 0.913 15 C 0.145 3.855 16 N -0.602 5.602 17 C -0.232 4.232 18 H 0.078 0.922 19 C -0.007 4.007 20 N -0.913 5.913 21 Si 0.910 3.090 22 H -0.290 1.290 23 H -0.291 1.291 24 H -0.281 1.281 25 C 0.180 3.820 26 C 0.114 3.886 27 H 0.081 0.919 28 N -0.460 5.460 29 C 0.224 3.776 30 C -0.078 4.078 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.150 0.850 35 H 0.165 0.835 36 H 0.196 0.804 37 H 0.059 0.941 38 H 0.094 0.906 39 H 0.084 0.916 40 H 0.074 0.926 41 H 0.038 0.962 42 H 0.016 0.984 43 H 0.252 0.748 44 H 0.045 0.955 45 H 0.056 0.944 46 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.909 8.648 11.002 25.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.080 4.080 3 C -0.160 4.160 4 C -0.059 4.059 5 N -0.040 5.040 6 C -0.156 4.156 7 C -0.108 4.108 8 C 0.393 3.607 9 O -0.404 6.404 10 N -0.320 5.320 11 C -0.014 4.014 12 C -0.161 4.161 13 C -0.131 4.131 14 H 0.106 0.894 15 C 0.019 3.981 16 N -0.329 5.329 17 C -0.360 4.360 18 H 0.096 0.904 19 C -0.204 4.204 20 N -0.560 5.560 21 Si 0.741 3.259 22 H -0.217 1.217 23 H -0.217 1.217 24 H -0.207 1.207 25 C 0.054 3.946 26 C 0.010 3.990 27 H 0.099 0.901 28 N -0.182 5.182 29 C -0.021 4.021 30 C -0.099 4.099 31 H 0.094 0.906 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.168 0.832 35 H 0.183 0.817 36 H 0.213 0.787 37 H 0.077 0.923 38 H 0.112 0.888 39 H 0.102 0.898 40 H 0.093 0.907 41 H 0.056 0.944 42 H 0.034 0.966 43 H 0.062 0.938 44 H 0.063 0.937 45 H 0.074 0.926 46 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -20.300 8.347 10.817 24.469 hybrid contribution 0.636 0.850 -0.917 1.403 sum -19.663 9.197 9.900 23.859 Atomic orbital electron populations 1.20761 0.89664 1.03427 1.02820 1.19731 0.97008 0.92024 0.99230 1.20713 0.92062 0.99289 1.03975 1.21655 0.93029 0.88764 1.02487 1.42766 1.07206 1.07769 1.46274 1.22614 0.83354 0.97977 1.11671 1.20724 0.92574 0.90933 1.06594 1.16444 0.85995 0.80757 0.77475 1.90839 1.30914 1.67809 1.50808 1.48265 1.08608 1.04091 1.71034 1.22419 0.88062 0.90247 1.00706 1.22772 0.95385 0.96025 1.01913 1.22954 0.95895 0.95129 0.99128 0.89447 1.21071 0.93957 0.92549 0.90553 1.44139 1.71178 1.00561 1.17040 1.18999 1.32489 0.92721 0.91804 0.90410 1.24847 1.01422 0.95366 0.98766 1.70014 1.51673 0.97589 1.36756 0.86150 0.78684 0.77045 0.84043 1.21724 1.21744 1.20716 1.21279 0.98295 0.87158 0.87848 1.22881 0.86787 0.88086 1.01214 0.90085 1.70978 0.97996 1.28213 1.20974 1.21036 0.94437 0.80325 1.06322 1.20132 0.87986 0.99649 1.02084 0.90626 0.91052 0.90903 0.83201 0.81726 0.78707 0.92255 0.88833 0.89766 0.90726 0.94378 0.96629 0.93768 0.93711 0.92619 0.83112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.48 10.02 36.01 0.36 -0.12 16 2 C -0.07 -0.54 5.88 -104.58 -0.62 -1.16 16 3 C -0.14 -0.91 9.67 -39.90 -0.39 -1.30 16 4 C 0.06 0.51 10.93 -16.59 -0.18 0.32 16 5 N -0.37 -4.53 2.93 -62.37 -0.18 -4.72 16 6 C -0.02 -0.32 11.47 -16.21 -0.19 -0.50 16 7 C 0.02 0.43 6.78 -83.44 -0.57 -0.13 16 8 C 0.61 12.71 7.56 -12.44 -0.09 12.61 16 9 O -0.53 -12.61 16.96 5.28 0.09 -12.52 16 10 N -0.59 -11.79 2.83 -163.09 -0.46 -12.25 16 11 C 0.11 1.81 6.08 -2.60 -0.02 1.80 16 12 C -0.12 -2.03 6.32 -24.81 -0.16 -2.19 16 13 C -0.11 -2.00 3.97 -88.26 -0.35 -2.35 16 14 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 15 C 0.15 3.08 6.50 -3.69 -0.02 3.06 16 16 N -0.60 -16.09 3.37 -172.25 -0.58 -16.67 16 17 C -0.23 -6.71 10.25 -15.06 -0.15 -6.86 16 18 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 19 C -0.01 -0.21 5.48 -17.43 -0.10 -0.31 16 20 N -0.91 -28.62 10.23 55.49 0.57 -28.05 16 21 Si 0.91 23.02 29.55 -169.99 -5.02 18.00 16 22 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 23 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 24 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 25 C 0.18 4.79 4.62 -3.58 -0.02 4.78 16 26 C 0.11 2.41 3.81 -65.90 -0.25 2.16 16 27 H 0.08 1.70 8.14 -51.93 -0.42 1.27 16 28 N -0.46 -7.46 8.37 -9.35 -0.08 -7.53 16 29 C 0.22 3.02 7.79 -156.04 -1.22 1.80 16 30 C -0.08 -0.77 9.75 -39.31 -0.38 -1.16 16 31 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.07 0.23 8.10 -51.93 -0.42 -0.19 16 33 H 0.07 0.29 8.08 -51.93 -0.42 -0.13 16 34 H 0.15 0.49 8.06 -52.49 -0.42 0.07 16 35 H 0.17 0.82 8.06 -52.48 -0.42 0.40 16 36 H 0.20 2.45 8.06 -52.49 -0.42 2.02 16 37 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.09 1.60 6.17 -51.93 -0.32 1.28 16 39 H 0.08 1.64 7.93 -51.93 -0.41 1.23 16 40 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 41 H 0.04 0.78 7.95 -51.93 -0.41 0.36 16 42 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.25 7.71 8.31 -40.82 -0.34 7.37 16 44 H 0.04 1.36 7.51 -51.93 -0.39 0.97 16 45 H 0.06 1.69 6.89 -51.93 -0.36 1.33 16 46 H 0.15 1.23 8.06 -52.48 -0.42 0.80 16 LS Contribution 372.32 15.07 5.61 5.61 Total: -1.00 -36.97 372.32 -10.90 -47.87 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -6.51 Total: -0.20 kcal Atomic # 6 Polarization: 14.79 SS G_CDS: -4.33 Total: 10.46 kcal Atomic # 7 Polarization: -68.49 SS G_CDS: -0.74 Total: -69.22 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: 0.09 Total: -12.52 kcal Atomic # 14 Polarization: 23.02 SS G_CDS: -5.02 Total: 18.00 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -36.97 -10.90 -47.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076001842.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.678 kcal (2) G-P(sol) polarization free energy of solvation -36.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.871 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds