Wall clock time and date at job start Sat Apr 11 2020 06:04:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.40570 * 120.13285 * 2 1 4 4 C 1.34851 * 120.33843 * 180.02562 * 3 2 1 5 5 N 1.36678 * 120.64339 * 0.02571 * 4 3 2 6 6 C 1.36196 * 132.29636 * 179.97438 * 5 4 3 7 7 C 1.36575 * 107.09145 * 180.02562 * 6 5 4 8 8 C 1.47592 * 125.91741 * 179.97438 * 7 6 5 9 9 O 1.21597 * 119.99910 * 0.02562 * 8 7 6 10 10 N 1.34779 * 120.00540 * 179.97438 * 8 7 6 11 11 C 1.47346 * 125.51659 * 0.03029 * 10 8 7 12 12 C 1.54860 * 104.90363 * 156.70641 * 11 10 8 13 13 C 1.54784 * 101.41862 * 37.27358 * 12 11 10 14 14 H 1.09006 * 113.40287 * 85.76078 * 13 12 11 15 15 C 1.53515 * 109.68354 * 212.86984 * 13 12 11 16 16 N 1.46654 * 107.04931 * 84.08984 * 15 13 12 17 17 C 1.36932 * 125.29109 * 197.35876 * 16 15 13 18 18 H 1.08001 * 120.00139 * 0.05381 * 17 16 15 19 19 C 1.38809 * 119.99912 * 180.02562 * 17 16 15 20 20 N 1.31614 * 120.00420 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99824 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47110 * 90.00233 * 21 19 17 23 23 H 1.48500 * 109.47152 * 209.99662 * 21 19 17 24 24 H 1.48499 * 109.47483 * 329.99752 * 21 19 17 25 25 C 1.46495 * 109.42081 * 17.38481 * 16 15 13 26 26 C 1.47250 * 125.52526 * 180.02562 * 10 8 7 27 27 H 1.08996 * 112.73273 * 56.17468 * 26 10 8 28 28 N 1.34586 * 108.16561 * 0.22522 * 7 6 5 29 29 C 1.32232 * 109.02203 * 359.62115 * 28 7 6 30 30 C 1.35894 * 120.13409 * 180.02562 * 2 1 3 31 31 H 1.09004 * 109.46922 * 269.98028 * 1 2 3 32 32 H 1.09005 * 109.47383 * 29.97535 * 1 2 3 33 33 H 1.09000 * 109.47507 * 149.97391 * 1 2 3 34 34 H 1.07997 * 119.83524 * 0.02562 * 3 2 1 35 35 H 1.08007 * 119.67898 * 180.02562 * 4 3 2 36 36 H 1.07998 * 126.45428 * 0.02562 * 6 5 4 37 37 H 1.09000 * 110.35579 * 275.57238 * 11 10 8 38 38 H 1.09001 * 110.35394 * 37.75501 * 11 10 8 39 39 H 1.09000 * 111.08611 * 279.22111 * 12 11 10 40 40 H 1.08996 * 110.99755 * 155.29035 * 12 11 10 41 41 H 1.08997 * 109.92419 * 324.74273 * 15 13 12 42 42 H 1.09000 * 109.92120 * 203.44008 * 15 13 12 43 43 H 0.96999 * 120.00413 * 180.02562 * 20 19 17 44 44 H 1.09002 * 109.71712 * 117.76499 * 25 16 15 45 45 H 1.09001 * 109.71175 * 238.36286 * 25 16 15 46 46 H 1.08004 * 120.32200 * 0.02562 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2127 1.2157 0.0000 4 6 3.5612 1.2206 -0.0005 5 7 4.2620 0.0472 -0.0016 6 6 5.5969 -0.2231 -0.0027 7 6 5.7312 -1.5823 -0.0040 8 6 7.0059 -2.3263 -0.0061 9 8 8.0618 -1.7233 -0.0063 10 7 6.9996 -3.6741 -0.0067 11 6 5.7962 -4.5245 -0.0061 12 6 6.2638 -5.8766 -0.5989 13 6 7.6840 -6.0008 0.0040 14 1 7.6948 -6.4480 0.9980 15 6 8.6041 -6.7288 -0.9860 16 7 9.1023 -5.7227 -1.9296 17 6 9.6679 -5.9917 -3.1473 18 1 9.7744 -7.0139 -3.4793 19 6 10.1039 -4.9505 -3.9552 20 7 9.9742 -3.7048 -3.5507 21 14 10.8749 -5.3175 -5.6166 22 1 9.8159 -5.3514 -6.6571 23 1 11.8617 -4.2587 -5.9491 24 1 11.5601 -6.6339 -5.5646 25 6 8.9013 -4.3852 -1.3667 26 6 8.1939 -4.5353 -0.0082 27 1 8.8636 -4.3281 0.8265 28 7 4.4999 -2.1256 -0.0087 29 6 3.6009 -1.1559 -0.0021 30 6 2.1892 -1.1753 -0.0005 31 1 -0.3633 -0.0004 1.0277 32 1 -0.3634 0.8902 -0.5135 33 1 -0.3634 -0.8897 -0.5142 34 1 1.6722 2.1507 0.0004 35 1 4.0926 2.1609 -0.0001 36 1 6.3982 0.5009 -0.0026 37 1 5.4302 -4.6627 1.0113 38 1 5.0198 -4.0831 -0.6310 39 1 6.3031 -5.8349 -1.6873 40 1 5.6236 -6.6924 -0.2632 41 1 8.0422 -7.4940 -1.5215 42 1 9.4389 -7.1828 -0.4521 43 1 10.2785 -2.9773 -4.1154 44 1 9.8655 -3.8963 -1.2271 45 1 8.2824 -3.7922 -2.0401 46 1 1.6567 -2.1149 -0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001076001842.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:19 Heat of formation + Delta-G solvation = 77.561422 kcal Electronic energy + Delta-G solvation = -29588.571804 eV Core-core repulsion = 25672.741437 eV Total energy + Delta-G solvation = -3915.830367 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.91950 -41.45556 -39.47007 -38.43327 -36.63108 -35.26796 -34.05816 -32.27209 -31.83962 -30.98394 -30.33326 -28.58762 -27.82975 -26.54686 -25.23179 -24.13180 -23.20440 -22.62320 -22.25587 -20.96551 -20.16278 -19.09292 -18.84562 -17.89944 -17.70805 -17.24877 -17.00962 -16.56378 -16.33560 -15.83440 -15.67000 -15.54930 -15.26803 -15.02927 -14.92473 -14.37998 -14.28225 -14.11424 -13.70507 -13.39343 -13.35236 -13.24570 -12.96984 -12.91587 -12.71971 -12.67018 -12.62399 -12.49805 -12.16252 -11.93202 -11.85357 -11.60499 -11.56185 -11.47895 -11.31761 -11.03300 -10.71194 -9.99203 -9.60745 -8.90572 -8.87881 -7.83439 -5.23196 -0.34732 0.15786 0.99515 1.40243 1.41160 1.45023 1.53914 1.98829 2.27876 2.47964 2.53311 2.94108 3.30415 3.33173 3.54874 3.67492 3.71777 3.75785 3.80047 4.01044 4.07182 4.14048 4.26307 4.34032 4.37780 4.45218 4.49614 4.61725 4.67636 4.80263 4.82332 4.89321 4.91096 4.96233 5.02233 5.09234 5.15998 5.20744 5.24616 5.34665 5.43070 5.44519 5.50201 5.56803 5.59504 5.78593 5.96591 6.18325 6.47936 6.60350 7.05484 7.11838 7.77849 8.39867 9.24646 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015304 B = 0.002924 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.201720 B = 9575.225870 C =10161.341445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.049 4.049 3 C -0.126 4.126 4 C 0.043 3.957 5 N -0.369 5.369 6 C -0.023 4.023 7 C -0.013 4.013 8 C 0.597 3.403 9 O -0.577 6.577 10 N -0.593 5.593 11 C 0.113 3.887 12 C -0.113 4.113 13 C -0.092 4.092 14 H 0.136 0.864 15 C 0.138 3.862 16 N -0.623 5.623 17 C -0.241 4.241 18 H 0.092 0.908 19 C -0.075 4.075 20 N -0.953 5.953 21 Si 0.983 3.017 22 H -0.285 1.285 23 H -0.299 1.299 24 H -0.261 1.261 25 C 0.204 3.796 26 C 0.115 3.885 27 H 0.080 0.920 28 N -0.490 5.490 29 C 0.220 3.780 30 C -0.111 4.111 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.077 0.923 34 H 0.195 0.805 35 H 0.197 0.803 36 H 0.205 0.795 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.047 0.953 40 H 0.123 0.877 41 H 0.054 0.946 42 H 0.028 0.972 43 H 0.241 0.759 44 H -0.013 1.013 45 H 0.006 0.994 46 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.835 8.337 11.978 28.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.055 4.055 3 C -0.145 4.145 4 C -0.076 4.076 5 N -0.040 5.040 6 C -0.159 4.159 7 C -0.144 4.144 8 C 0.386 3.614 9 O -0.457 6.457 10 N -0.324 5.324 11 C -0.008 4.008 12 C -0.151 4.151 13 C -0.111 4.111 14 H 0.154 0.846 15 C 0.013 3.987 16 N -0.350 5.350 17 C -0.370 4.370 18 H 0.110 0.890 19 C -0.267 4.267 20 N -0.602 5.602 21 Si 0.811 3.189 22 H -0.212 1.212 23 H -0.226 1.226 24 H -0.185 1.185 25 C 0.077 3.923 26 C 0.010 3.990 27 H 0.098 0.902 28 N -0.212 5.212 29 C -0.026 4.026 30 C -0.131 4.131 31 H 0.109 0.891 32 H 0.110 0.890 33 H 0.095 0.905 34 H 0.212 0.788 35 H 0.214 0.786 36 H 0.222 0.778 37 H 0.105 0.895 38 H 0.105 0.895 39 H 0.066 0.934 40 H 0.142 0.858 41 H 0.072 0.928 42 H 0.046 0.954 43 H 0.051 0.949 44 H 0.006 0.994 45 H 0.024 0.976 46 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -24.278 7.977 11.815 28.154 hybrid contribution 1.634 1.076 -1.203 2.297 sum -22.644 9.053 10.612 26.595 Atomic orbital electron populations 1.20894 0.86924 1.04743 1.04134 1.20268 0.98843 0.91358 0.95027 1.21343 0.91405 1.00782 1.01007 1.22459 0.94066 0.88510 1.02580 1.42877 1.06269 1.08923 1.45942 1.22653 0.84846 0.97139 1.11263 1.20295 0.91918 0.91942 1.10287 1.17061 0.86875 0.81134 0.76359 1.90780 1.32967 1.68840 1.53143 1.48393 1.09207 1.04243 1.70522 1.22558 0.86563 0.89513 1.02174 1.22757 0.95298 0.97417 0.99628 1.23030 0.95570 0.91729 1.00740 0.84593 1.21351 0.94979 0.91975 0.90427 1.44449 1.71192 1.01832 1.17480 1.19517 1.31522 0.93259 0.92683 0.89042 1.25831 1.02740 0.95153 1.03001 1.70331 1.53300 0.98567 1.37962 0.85007 0.77537 0.77296 0.79067 1.21192 1.22557 1.18546 1.20759 0.95018 0.86583 0.89936 1.22695 0.87480 0.91186 0.97598 0.90152 1.70814 0.97640 1.29569 1.23153 1.21580 0.95549 0.80284 1.05225 1.20406 0.86346 1.01529 1.04850 0.89059 0.88978 0.90457 0.78795 0.78612 0.77797 0.89474 0.89503 0.93403 0.85841 0.92778 0.95443 0.94931 0.99445 0.97556 0.81988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.44 10.02 71.24 0.71 0.27 16 2 C -0.05 -0.54 5.88 -19.84 -0.12 -0.65 16 3 C -0.13 -1.10 9.67 22.06 0.21 -0.88 16 4 C 0.04 0.60 10.93 83.16 0.91 1.51 16 5 N -0.37 -8.96 2.93 -351.25 -1.03 -9.99 16 6 C -0.02 -0.71 11.47 83.63 0.96 0.25 16 7 C -0.01 -0.48 6.78 40.80 0.28 -0.21 16 8 C 0.60 27.19 7.56 86.71 0.66 27.85 16 9 O -0.58 -30.50 16.96 -4.02 -0.07 -30.57 16 10 N -0.59 -25.06 2.83 -788.16 -2.23 -27.29 16 11 C 0.11 3.76 6.08 86.85 0.53 4.29 16 12 C -0.11 -3.56 6.32 31.84 0.20 -3.35 16 13 C -0.09 -3.14 3.97 -9.27 -0.04 -3.18 16 14 H 0.14 3.48 8.14 -2.38 -0.02 3.46 16 15 C 0.14 5.72 6.50 86.52 0.56 6.28 16 16 N -0.62 -34.55 3.37 -698.88 -2.36 -36.91 16 17 C -0.24 -14.34 10.25 84.03 0.86 -13.48 16 18 H 0.09 5.06 7.83 -2.91 -0.02 5.04 16 19 C -0.07 -4.61 5.48 84.86 0.47 -4.15 16 20 N -0.95 -64.07 10.23 21.65 0.22 -63.84 16 21 Si 0.98 49.03 29.55 68.60 2.03 51.05 16 22 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 23 H -0.30 -15.13 7.11 99.48 0.71 -14.42 16 24 H -0.26 -12.02 7.11 99.48 0.71 -11.32 16 25 C 0.20 11.71 4.62 86.68 0.40 12.11 16 26 C 0.11 5.09 3.81 45.90 0.17 5.26 16 27 H 0.08 3.54 8.14 -2.39 -0.02 3.52 16 28 N -0.49 -16.48 8.37 -183.49 -1.54 -18.02 16 29 C 0.22 5.90 7.79 134.20 1.05 6.95 16 30 C -0.11 -2.00 9.75 22.45 0.22 -1.79 16 31 H 0.09 0.20 8.14 -2.38 -0.02 0.18 16 32 H 0.09 0.07 8.10 -2.38 -0.02 0.05 16 33 H 0.08 0.31 8.08 -2.39 -0.02 0.29 16 34 H 0.20 0.04 8.06 -2.91 -0.02 0.01 16 35 H 0.20 1.34 8.06 -2.91 -0.02 1.32 16 36 H 0.21 5.58 8.06 -2.91 -0.02 5.55 16 37 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 38 H 0.09 3.05 6.17 -2.39 -0.01 3.04 16 39 H 0.05 1.87 7.93 -2.39 -0.02 1.85 16 40 H 0.12 2.72 8.14 -2.39 -0.02 2.70 16 41 H 0.05 2.10 7.95 -2.39 -0.02 2.08 16 42 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.24 15.94 8.31 -92.71 -0.77 15.17 16 44 H -0.01 -0.85 7.51 -2.39 -0.02 -0.87 16 45 H 0.01 0.42 6.89 -2.39 -0.02 0.40 16 46 H 0.16 2.40 8.06 -2.91 -0.02 2.38 16 Total: -1.00 -91.78 372.32 4.05 -87.73 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: 0.99 Total: 10.76 kcal Atomic # 6 Polarization: 29.05 SS G_CDS: 8.03 Total: 37.08 kcal Atomic # 7 Polarization: -149.12 SS G_CDS: -6.93 Total: -156.05 kcal Atomic # 8 Polarization: -30.50 SS G_CDS: -0.07 Total: -30.57 kcal Atomic # 14 Polarization: 49.03 SS G_CDS: 2.03 Total: 51.05 kcal Total: -91.78 4.05 -87.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076001842.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.289 kcal (2) G-P(sol) polarization free energy of solvation -91.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.728 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds