Wall clock time and date at job start Sat Apr 11 2020 06:04:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30184 * 125.08716 * 2 1 4 4 C 1.34898 * 109.73042 * 179.76554 * 3 2 1 5 5 C 1.46282 * 126.49408 * 180.02562 * 4 3 2 6 6 O 1.21773 * 120.00058 * 180.42321 * 5 4 3 7 7 N 1.34785 * 120.00257 * 0.42083 * 5 4 3 8 8 C 1.47353 * 125.52505 * 359.69593 * 7 5 4 9 9 C 1.55151 * 104.78277 * 156.48982 * 8 7 5 10 10 C 1.54801 * 101.40527 * 37.51476 * 9 8 7 11 11 H 1.08999 * 112.63492 * 85.17904 * 10 9 8 12 12 C 1.53260 * 109.74725 * 212.12644 * 10 9 8 13 13 N 1.46581 * 108.15959 * 95.77017 * 12 10 9 14 14 C 1.36932 * 125.30957 * 177.89081 * 13 12 10 15 15 H 1.07993 * 120.00108 * 359.97438 * 14 13 12 16 16 C 1.38820 * 120.00065 * 179.97438 * 14 13 12 17 17 N 1.31617 * 119.99857 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99770 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47007 * 60.00532 * 18 16 14 20 20 H 1.48499 * 109.46945 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47484 * 299.99847 * 18 16 14 22 22 C 1.46616 * 109.38522 * 357.88299 * 13 12 10 23 23 C 1.47209 * 125.52927 * 180.02562 * 7 5 4 24 24 H 1.08995 * 112.29284 * 56.20880 * 23 7 5 25 25 C 1.40145 * 107.00495 * 0.36563 * 4 3 2 26 26 C 1.40175 * 133.57880 * 179.97438 * 25 4 3 27 27 C 1.36330 * 119.20161 * 179.74982 * 26 25 4 28 28 C 1.40394 * 119.56172 * 359.91286 * 27 26 25 29 29 C 1.35025 * 120.43738 * 0.06887 * 28 27 26 30 30 N 1.36246 * 125.08843 * 180.02562 * 2 1 3 31 31 H 1.08990 * 109.47218 * 269.99928 * 1 2 3 32 32 H 1.09005 * 109.46972 * 30.00024 * 1 2 3 33 33 H 1.09004 * 109.46891 * 149.99640 * 1 2 3 34 34 H 1.09004 * 110.35258 * 275.43066 * 8 7 5 35 35 H 1.08991 * 110.35766 * 37.72641 * 8 7 5 36 36 H 1.09007 * 111.20475 * 279.43156 * 9 8 7 37 37 H 1.09000 * 110.95660 * 155.49367 * 9 8 7 38 38 H 1.09003 * 109.73357 * 215.45146 * 12 10 9 39 39 H 1.09001 * 109.74177 * 336.07820 * 12 10 9 40 40 H 0.97000 * 119.99755 * 179.97438 * 17 16 14 41 41 H 1.09000 * 109.91158 * 258.45715 * 22 13 12 42 42 H 1.09002 * 109.91093 * 137.17629 * 22 13 12 43 43 H 1.08006 * 120.40170 * 359.65305 * 26 25 4 44 44 H 1.08002 * 120.22120 * 179.97438 * 27 26 25 45 45 H 1.07997 * 119.78394 * 180.02562 * 28 27 26 46 46 H 1.08005 * 119.70284 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2554 1.0653 0.0000 4 6 3.5562 0.7080 0.0052 5 6 4.7065 1.6116 0.0074 6 8 5.8368 1.1584 0.0044 7 7 4.5155 2.9459 0.0128 8 6 3.2070 3.6235 0.0104 9 6 3.4856 5.0243 0.6165 10 6 4.8760 5.3462 0.0170 11 1 4.8120 5.7891 -0.9769 12 6 5.6807 6.1989 1.0041 13 7 6.5423 5.3049 1.7833 14 6 7.4390 5.7036 2.7382 15 1 7.5531 6.7528 2.9672 16 6 8.2014 4.7592 3.4120 17 7 8.0619 3.4805 3.1333 18 14 9.4252 5.3034 4.7141 19 1 8.7084 6.0242 5.7966 20 1 10.1083 4.1123 5.2799 21 1 10.4323 6.2060 4.1007 22 6 6.2940 3.9170 1.3810 23 6 5.5802 3.9625 0.0150 24 1 6.2653 3.8455 -0.8246 25 6 3.5965 -0.6928 0.0001 26 6 4.6393 -1.6295 0.0013 27 6 4.3390 -2.9593 0.0001 28 6 2.9952 -3.3659 -0.0005 29 6 2.0033 -2.4497 -0.0013 30 7 2.2902 -1.1149 -0.0005 31 1 -0.3633 0.0000 1.0276 32 1 -0.3633 0.8900 -0.5139 33 1 -0.3633 -0.8900 -0.5139 34 1 2.8302 3.7166 -1.0081 35 1 2.4961 3.0773 0.6302 36 1 3.5295 4.9814 1.7048 37 1 2.7402 5.7475 0.2856 38 1 6.2932 6.9157 0.4571 39 1 5.0014 6.7293 1.6714 40 1 8.5950 2.8206 3.6038 41 1 5.6573 3.4255 2.1166 42 1 7.2395 3.3826 1.2881 43 1 5.6685 -1.3017 0.0016 44 1 5.1295 -3.6952 0.0006 45 1 2.7532 -4.4184 -0.0011 46 1 0.9737 -2.7757 -0.0022 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076037155.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:23 Heat of formation + Delta-G solvation = 99.147734 kcal Electronic energy + Delta-G solvation = -30006.107404 eV Core-core repulsion = 26091.213090 eV Total energy + Delta-G solvation = -3914.894314 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.96356 -39.76308 -37.79577 -37.36551 -34.74426 -33.65726 -32.13138 -31.72856 -30.53084 -30.20685 -28.58235 -27.20702 -26.30910 -24.47345 -24.06346 -23.54325 -22.03813 -21.25923 -20.30643 -19.56705 -18.71590 -17.60657 -16.93841 -16.74492 -16.35560 -16.16500 -15.72135 -15.26880 -15.10018 -14.47687 -14.37634 -13.96121 -13.85631 -13.43675 -13.34583 -13.16646 -12.89333 -12.59391 -12.46375 -12.38095 -11.97653 -11.85805 -11.83798 -11.73886 -11.38891 -11.04930 -10.95256 -10.73320 -10.69416 -10.58394 -10.23276 -9.90768 -9.86024 -9.64576 -9.57475 -9.49918 -9.43456 -8.48597 -8.00462 -7.50758 -6.70106 -5.51662 -2.93722 0.52225 0.94833 2.30604 2.40182 3.13804 3.47619 3.49174 3.52260 3.54397 3.92848 4.10696 4.19028 4.43300 4.59602 4.60651 4.70819 4.87050 4.96111 5.09471 5.11634 5.22815 5.29567 5.41778 5.45070 5.57344 5.61057 5.62524 5.77027 5.83717 5.89178 5.97973 6.08901 6.09276 6.11922 6.23562 6.35656 6.38139 6.38720 6.57046 6.69185 6.78124 6.85435 6.98009 7.05866 7.59237 7.72597 7.76095 8.04833 8.17915 8.49813 8.77628 9.35483 9.96567 10.59756 11.52351 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014057 B = 0.003401 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1991.393434 B = 8231.788649 C = 9571.074519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.159 3.841 3 N -0.412 5.412 4 C -0.039 4.039 5 C 0.613 3.387 6 O -0.533 6.533 7 N -0.593 5.593 8 C 0.109 3.891 9 C -0.125 4.125 10 C -0.110 4.110 11 H 0.086 0.914 12 C 0.146 3.854 13 N -0.602 5.602 14 C -0.231 4.231 15 H 0.077 0.923 16 C -0.008 4.008 17 N -0.914 5.914 18 Si 0.912 3.088 19 H -0.286 1.286 20 H -0.291 1.291 21 H -0.285 1.285 22 C 0.168 3.832 23 C 0.116 3.884 24 H 0.082 0.918 25 C 0.070 3.930 26 C -0.059 4.059 27 C -0.124 4.124 28 C -0.129 4.129 29 C 0.043 3.957 30 N -0.362 5.362 31 H 0.080 0.920 32 H 0.094 0.906 33 H 0.071 0.929 34 H 0.059 0.941 35 H 0.091 0.909 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.022 0.978 39 H 0.025 0.975 40 H 0.253 0.747 41 H 0.020 0.980 42 H 0.096 0.904 43 H 0.162 0.838 44 H 0.141 0.859 45 H 0.149 0.851 46 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.106 -12.573 -9.641 24.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.097 4.097 3 N -0.128 5.128 4 C -0.174 4.174 5 C 0.401 3.599 6 O -0.410 6.410 7 N -0.325 5.325 8 C -0.014 4.014 9 C -0.163 4.163 10 C -0.129 4.129 11 H 0.104 0.896 12 C 0.020 3.980 13 N -0.329 5.329 14 C -0.359 4.359 15 H 0.095 0.905 16 C -0.204 4.204 17 N -0.561 5.561 18 Si 0.742 3.258 19 H -0.213 1.213 20 H -0.216 1.216 21 H -0.212 1.212 22 C 0.042 3.958 23 C 0.012 3.988 24 H 0.100 0.900 25 C -0.042 4.042 26 C -0.078 4.078 27 C -0.145 4.145 28 C -0.150 4.150 29 C -0.079 4.079 30 N -0.033 5.033 31 H 0.099 0.901 32 H 0.112 0.888 33 H 0.090 0.910 34 H 0.077 0.923 35 H 0.109 0.891 36 H 0.098 0.902 37 H 0.093 0.907 38 H 0.040 0.960 39 H 0.042 0.958 40 H 0.063 0.937 41 H 0.038 0.962 42 H 0.114 0.886 43 H 0.180 0.820 44 H 0.159 0.841 45 H 0.167 0.833 46 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -17.771 -12.130 -9.494 23.518 hybrid contribution 0.743 -0.639 0.748 1.233 sum -17.029 -12.769 -8.746 23.011 Atomic orbital electron populations 1.20158 0.84069 1.04078 1.03623 1.23391 0.95661 0.79047 1.11611 1.70145 1.01580 1.26862 1.14190 1.20580 0.91432 0.89584 1.15808 1.16042 0.86303 0.80347 0.77251 1.90849 1.23002 1.75785 1.51392 1.48203 1.08342 1.04201 1.71756 1.22444 0.85706 0.92710 1.00551 1.22879 0.96313 0.95660 1.01432 1.22867 0.95283 0.95705 0.99076 0.89581 1.20970 0.92198 0.92884 0.91978 1.44169 1.43893 1.01428 1.43387 1.18977 1.12940 0.92498 1.11511 0.90480 1.24842 1.00145 0.95378 1.00049 1.69934 1.42932 0.99362 1.43845 0.86202 0.81071 0.77071 0.81407 1.21287 1.21639 1.21161 1.21653 0.99873 0.86441 0.87837 1.22968 0.89100 0.85117 1.01601 0.90034 1.19247 0.83920 0.94297 1.06686 1.20907 0.99451 0.91180 0.96274 1.21202 0.96526 0.95942 1.00848 1.20891 0.92390 0.99835 1.01875 1.21594 1.01340 0.80393 1.04530 1.42822 1.07914 1.06405 1.46170 0.90115 0.88774 0.90991 0.92266 0.89060 0.90204 0.90653 0.95978 0.95759 0.93673 0.96245 0.88649 0.82044 0.84116 0.83313 0.81757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.43 10.32 36.01 0.37 -0.06 16 2 C 0.16 1.96 7.94 -154.57 -1.23 0.73 16 3 N -0.41 -6.44 8.28 -6.74 -0.06 -6.50 16 4 C -0.04 -0.71 6.88 -82.57 -0.57 -1.27 16 5 C 0.61 12.99 7.63 -13.02 -0.10 12.89 16 6 O -0.53 -12.80 15.87 5.12 0.08 -12.72 16 7 N -0.59 -11.95 2.85 -163.18 -0.46 -12.41 16 8 C 0.11 1.79 6.10 -2.44 -0.01 1.78 16 9 C -0.12 -2.02 6.25 -24.64 -0.15 -2.17 16 10 C -0.11 -2.01 3.90 -88.34 -0.34 -2.36 16 11 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 12 C 0.15 3.16 6.65 -3.86 -0.03 3.13 16 13 N -0.60 -16.33 3.37 -172.19 -0.58 -16.91 16 14 C -0.23 -6.74 10.25 -15.06 -0.15 -6.90 16 15 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 16 C -0.01 -0.23 5.48 -17.43 -0.10 -0.32 16 17 N -0.91 -28.62 10.17 55.49 0.56 -28.05 16 18 Si 0.91 23.03 29.55 -169.99 -5.02 18.01 16 19 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 20 H -0.29 -7.40 7.11 56.52 0.40 -6.99 16 21 H -0.28 -7.05 7.11 56.52 0.40 -6.64 16 22 C 0.17 4.51 4.80 -3.36 -0.02 4.49 16 23 C 0.12 2.51 3.88 -65.72 -0.25 2.26 16 24 H 0.08 1.79 8.14 -51.93 -0.42 1.37 16 25 C 0.07 1.10 6.72 -83.99 -0.56 0.53 16 26 C -0.06 -0.80 9.73 -39.54 -0.38 -1.19 16 27 C -0.12 -1.20 10.08 -39.46 -0.40 -1.60 16 28 C -0.13 -0.97 9.98 -39.91 -0.40 -1.37 16 29 C 0.04 0.35 10.77 -16.60 -0.18 0.17 16 30 N -0.36 -4.44 2.94 -57.93 -0.17 -4.61 16 31 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.33 7.98 -51.93 -0.41 -0.08 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.09 1.51 6.18 -51.93 -0.32 1.19 16 36 H 0.08 1.48 7.88 -51.93 -0.41 1.07 16 37 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.02 0.52 7.74 -51.93 -0.40 0.12 16 40 H 0.25 7.72 8.31 -40.82 -0.34 7.39 16 41 H 0.02 0.59 7.94 -51.93 -0.41 0.17 16 42 H 0.10 2.97 6.23 -51.93 -0.32 2.64 16 43 H 0.16 2.42 7.17 -52.48 -0.38 2.04 16 44 H 0.14 1.00 8.06 -52.49 -0.42 0.57 16 45 H 0.15 0.58 8.06 -52.49 -0.42 0.16 16 46 H 0.17 0.70 7.94 -52.48 -0.42 0.28 16 LS Contribution 370.02 15.07 5.58 5.58 Total: -1.00 -37.29 370.02 -11.01 -48.30 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -6.43 Total: 0.57 kcal Atomic # 6 Polarization: 13.26 SS G_CDS: -4.51 Total: 8.75 kcal Atomic # 7 Polarization: -67.78 SS G_CDS: -0.71 Total: -68.49 kcal Atomic # 8 Polarization: -12.80 SS G_CDS: 0.08 Total: -12.72 kcal Atomic # 14 Polarization: 23.03 SS G_CDS: -5.02 Total: 18.01 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -37.29 -11.01 -48.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076037155.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.450 kcal (2) G-P(sol) polarization free energy of solvation -37.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds