Wall clock time and date at job start Sat Apr 11 2020 06:04:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30184 * 125.08716 * 2 1 4 4 C 1.34898 * 109.73042 * 179.76554 * 3 2 1 5 5 C 1.46282 * 126.49408 * 180.02562 * 4 3 2 6 6 O 1.21773 * 120.00058 * 180.42321 * 5 4 3 7 7 N 1.34785 * 120.00257 * 0.42083 * 5 4 3 8 8 C 1.47353 * 125.52505 * 359.69593 * 7 5 4 9 9 C 1.55151 * 104.78277 * 156.48982 * 8 7 5 10 10 C 1.54801 * 101.40527 * 37.51476 * 9 8 7 11 11 H 1.08999 * 112.63492 * 85.17904 * 10 9 8 12 12 C 1.53260 * 109.74725 * 212.12644 * 10 9 8 13 13 N 1.46581 * 108.15959 * 95.77017 * 12 10 9 14 14 C 1.36932 * 125.30957 * 177.89081 * 13 12 10 15 15 H 1.07993 * 120.00108 * 359.97438 * 14 13 12 16 16 C 1.38820 * 120.00065 * 179.97438 * 14 13 12 17 17 N 1.31617 * 119.99857 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99770 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47007 * 60.00532 * 18 16 14 20 20 H 1.48499 * 109.46945 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47484 * 299.99847 * 18 16 14 22 22 C 1.46616 * 109.38522 * 357.88299 * 13 12 10 23 23 C 1.47209 * 125.52927 * 180.02562 * 7 5 4 24 24 H 1.08995 * 112.29284 * 56.20880 * 23 7 5 25 25 C 1.40145 * 107.00495 * 0.36563 * 4 3 2 26 26 C 1.40175 * 133.57880 * 179.97438 * 25 4 3 27 27 C 1.36330 * 119.20161 * 179.74982 * 26 25 4 28 28 C 1.40394 * 119.56172 * 359.91286 * 27 26 25 29 29 C 1.35025 * 120.43738 * 0.06887 * 28 27 26 30 30 N 1.36246 * 125.08843 * 180.02562 * 2 1 3 31 31 H 1.08990 * 109.47218 * 269.99928 * 1 2 3 32 32 H 1.09005 * 109.46972 * 30.00024 * 1 2 3 33 33 H 1.09004 * 109.46891 * 149.99640 * 1 2 3 34 34 H 1.09004 * 110.35258 * 275.43066 * 8 7 5 35 35 H 1.08991 * 110.35766 * 37.72641 * 8 7 5 36 36 H 1.09007 * 111.20475 * 279.43156 * 9 8 7 37 37 H 1.09000 * 110.95660 * 155.49367 * 9 8 7 38 38 H 1.09003 * 109.73357 * 215.45146 * 12 10 9 39 39 H 1.09001 * 109.74177 * 336.07820 * 12 10 9 40 40 H 0.97000 * 119.99755 * 179.97438 * 17 16 14 41 41 H 1.09000 * 109.91158 * 258.45715 * 22 13 12 42 42 H 1.09002 * 109.91093 * 137.17629 * 22 13 12 43 43 H 1.08006 * 120.40170 * 359.65305 * 26 25 4 44 44 H 1.08002 * 120.22120 * 179.97438 * 27 26 25 45 45 H 1.07997 * 119.78394 * 180.02562 * 28 27 26 46 46 H 1.08005 * 119.70284 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2554 1.0653 0.0000 4 6 3.5562 0.7080 0.0052 5 6 4.7065 1.6116 0.0074 6 8 5.8368 1.1584 0.0044 7 7 4.5155 2.9459 0.0128 8 6 3.2070 3.6235 0.0104 9 6 3.4856 5.0243 0.6165 10 6 4.8760 5.3462 0.0170 11 1 4.8120 5.7891 -0.9769 12 6 5.6807 6.1989 1.0041 13 7 6.5423 5.3049 1.7833 14 6 7.4390 5.7036 2.7382 15 1 7.5531 6.7528 2.9672 16 6 8.2014 4.7592 3.4120 17 7 8.0619 3.4805 3.1333 18 14 9.4252 5.3034 4.7141 19 1 8.7084 6.0242 5.7966 20 1 10.1083 4.1123 5.2799 21 1 10.4323 6.2060 4.1007 22 6 6.2940 3.9170 1.3810 23 6 5.5802 3.9625 0.0150 24 1 6.2653 3.8455 -0.8246 25 6 3.5965 -0.6928 0.0001 26 6 4.6393 -1.6295 0.0013 27 6 4.3390 -2.9593 0.0001 28 6 2.9952 -3.3659 -0.0005 29 6 2.0033 -2.4497 -0.0013 30 7 2.2902 -1.1149 -0.0005 31 1 -0.3633 0.0000 1.0276 32 1 -0.3633 0.8900 -0.5139 33 1 -0.3633 -0.8900 -0.5139 34 1 2.8302 3.7166 -1.0081 35 1 2.4961 3.0773 0.6302 36 1 3.5295 4.9814 1.7048 37 1 2.7402 5.7475 0.2856 38 1 6.2932 6.9157 0.4571 39 1 5.0014 6.7293 1.6714 40 1 8.5950 2.8206 3.6038 41 1 5.6573 3.4255 2.1166 42 1 7.2395 3.3826 1.2881 43 1 5.6685 -1.3017 0.0016 44 1 5.1295 -3.6952 0.0006 45 1 2.7532 -4.4184 -0.0011 46 1 0.9737 -2.7757 -0.0022 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001076037155.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:22 Heat of formation + Delta-G solvation = 74.742932 kcal Electronic energy + Delta-G solvation = -30007.165676 eV Core-core repulsion = 26091.213090 eV Total energy + Delta-G solvation = -3915.952586 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.92654 -41.37404 -39.23543 -38.48573 -36.61593 -34.66076 -34.03960 -32.55791 -32.24635 -31.13739 -30.35348 -28.65779 -27.62442 -26.48095 -25.07337 -24.73342 -23.36885 -22.31732 -22.06694 -21.04877 -20.25153 -18.99632 -18.71586 -17.86243 -17.50428 -17.26229 -16.95081 -16.69951 -16.39774 -16.25424 -15.70174 -15.38771 -15.17349 -15.01517 -14.54979 -14.35731 -14.09931 -13.99567 -13.74924 -13.52237 -13.40268 -13.22366 -13.07453 -12.99434 -12.77043 -12.67814 -12.62034 -12.57412 -12.22972 -11.93398 -11.82760 -11.72087 -11.60845 -11.41692 -11.26772 -10.99600 -10.73084 -10.39090 -9.62998 -8.93089 -8.50138 -7.78835 -5.25505 -0.39426 0.06094 1.24338 1.40979 1.41559 1.47151 1.53603 2.04476 2.25707 2.48067 2.56870 3.15679 3.30971 3.37965 3.51051 3.64391 3.68762 3.75013 3.80442 3.90959 4.01962 4.13127 4.15082 4.34262 4.37170 4.47517 4.54758 4.58479 4.70968 4.76453 4.80275 4.83168 4.87622 4.93372 5.01669 5.08592 5.11084 5.19006 5.21694 5.24588 5.35472 5.45789 5.47822 5.51040 5.61626 5.79194 6.14519 6.22975 6.53366 6.68445 7.05455 7.23322 7.76841 8.38935 9.23520 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014057 B = 0.003401 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1991.393434 B = 8231.788649 C = 9571.074519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.166 3.834 3 N -0.432 5.432 4 C -0.108 4.108 5 C 0.600 3.400 6 O -0.588 6.588 7 N -0.600 5.600 8 C 0.114 3.886 9 C -0.114 4.114 10 C -0.092 4.092 11 H 0.130 0.870 12 C 0.139 3.861 13 N -0.624 5.624 14 C -0.245 4.245 15 H 0.091 0.909 16 C -0.074 4.074 17 N -0.952 5.952 18 Si 0.986 3.014 19 H -0.273 1.273 20 H -0.298 1.298 21 H -0.271 1.271 22 C 0.192 3.808 23 C 0.118 3.882 24 H 0.070 0.930 25 C 0.072 3.928 26 C -0.126 4.126 27 C -0.080 4.080 28 C -0.133 4.133 29 C 0.056 3.944 30 N -0.364 5.364 31 H 0.094 0.906 32 H 0.099 0.901 33 H 0.108 0.892 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.049 0.951 37 H 0.126 0.874 38 H 0.036 0.964 39 H 0.037 0.963 40 H 0.242 0.758 41 H -0.029 1.029 42 H 0.040 0.960 43 H 0.127 0.873 44 H 0.169 0.831 45 H 0.202 0.798 46 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.344 -13.703 -10.555 28.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.092 4.092 3 N -0.148 5.148 4 C -0.239 4.239 5 C 0.391 3.609 6 O -0.469 6.469 7 N -0.331 5.331 8 C -0.008 4.008 9 C -0.151 4.151 10 C -0.111 4.111 11 H 0.148 0.852 12 C 0.014 3.986 13 N -0.351 5.351 14 C -0.374 4.374 15 H 0.109 0.891 16 C -0.266 4.266 17 N -0.601 5.601 18 Si 0.814 3.186 19 H -0.198 1.198 20 H -0.224 1.224 21 H -0.196 1.196 22 C 0.065 3.935 23 C 0.013 3.987 24 H 0.089 0.911 25 C -0.043 4.043 26 C -0.145 4.145 27 C -0.102 4.102 28 C -0.152 4.152 29 C -0.065 4.065 30 N -0.035 5.035 31 H 0.113 0.887 32 H 0.118 0.882 33 H 0.126 0.874 34 H 0.103 0.897 35 H 0.108 0.892 36 H 0.068 0.932 37 H 0.144 0.856 38 H 0.054 0.946 39 H 0.055 0.945 40 H 0.052 0.948 41 H -0.011 1.011 42 H 0.059 0.941 43 H 0.144 0.856 44 H 0.186 0.814 45 H 0.219 0.781 46 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -22.055 -13.176 -10.428 27.727 hybrid contribution 1.953 -0.565 1.027 2.277 sum -20.103 -13.740 -9.401 26.102 Atomic orbital electron populations 1.20441 0.79866 1.06173 1.05122 1.24446 0.97457 0.78252 1.09001 1.69969 1.00664 1.28862 1.15270 1.20044 0.91447 0.90255 1.22167 1.16713 0.86971 0.81035 0.76140 1.90784 1.25339 1.76788 1.54012 1.48321 1.09223 1.03950 1.71601 1.22598 0.83875 0.92274 1.02006 1.22877 0.96199 0.96570 0.99494 1.22925 0.95295 0.92362 1.00567 0.85173 1.21243 0.92149 0.92832 0.92367 1.44498 1.44575 1.02319 1.43714 1.19509 1.12987 0.93170 1.11704 0.89086 1.25860 1.02580 0.95326 1.02833 1.70298 1.44021 1.00704 1.45096 0.85038 0.78552 0.76467 0.78589 1.19824 1.22429 1.19625 1.21090 0.96753 0.85951 0.89707 1.22685 0.89983 0.88356 0.97684 0.91148 1.19331 0.85987 0.93801 1.05154 1.20759 0.97952 0.93201 1.02622 1.21727 0.99145 0.94323 0.94979 1.21520 0.90582 1.02353 1.00767 1.22734 1.04331 0.78385 1.01021 1.43103 1.06303 1.08163 1.45922 0.88714 0.88206 0.87377 0.89680 0.89232 0.93243 0.85626 0.94642 0.94471 0.94817 1.01091 0.94135 0.85555 0.81355 0.78101 0.76311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.58 10.32 71.24 0.74 0.15 16 2 C 0.17 3.82 7.94 137.83 1.09 4.92 16 3 N -0.43 -13.83 8.28 -175.24 -1.45 -15.28 16 4 C -0.11 -4.25 6.88 41.23 0.28 -3.96 16 5 C 0.60 28.57 7.63 86.33 0.66 29.23 16 6 O -0.59 -32.51 15.87 -4.58 -0.07 -32.58 16 7 N -0.60 -26.17 2.85 -788.35 -2.24 -28.42 16 8 C 0.11 3.78 6.10 86.95 0.53 4.31 16 9 C -0.11 -3.55 6.25 31.95 0.20 -3.35 16 10 C -0.09 -3.32 3.90 -9.31 -0.04 -3.36 16 11 H 0.13 3.63 8.14 -2.39 -0.02 3.61 16 12 C 0.14 6.01 6.65 86.45 0.58 6.58 16 13 N -0.62 -35.63 3.37 -698.68 -2.36 -37.99 16 14 C -0.24 -14.86 10.25 84.04 0.86 -14.00 16 15 H 0.09 5.12 7.83 -2.91 -0.02 5.10 16 16 C -0.07 -4.59 5.48 84.86 0.47 -4.13 16 17 N -0.95 -64.66 10.17 21.65 0.22 -64.44 16 18 Si 0.99 49.34 29.55 68.60 2.03 51.37 16 19 H -0.27 -12.92 7.11 99.48 0.71 -12.21 16 20 H -0.30 -15.11 7.11 99.48 0.71 -14.40 16 21 H -0.27 -12.80 7.11 99.48 0.71 -12.10 16 22 C 0.19 11.32 4.80 86.76 0.42 11.74 16 23 C 0.12 5.48 3.88 46.03 0.18 5.65 16 24 H 0.07 3.37 8.14 -2.39 -0.02 3.36 16 25 C 0.07 2.37 6.72 39.22 0.26 2.63 16 26 C -0.13 -3.77 9.73 22.30 0.22 -3.55 16 27 C -0.08 -1.43 10.08 22.35 0.23 -1.20 16 28 C -0.13 -1.35 9.98 22.06 0.22 -1.13 16 29 C 0.06 0.65 10.77 83.22 0.90 1.55 16 30 N -0.36 -8.28 2.94 -337.19 -0.99 -9.27 16 31 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.10 0.95 8.14 -2.38 -0.02 0.93 16 33 H 0.11 0.33 7.98 -2.39 -0.02 0.31 16 34 H 0.09 2.39 8.14 -2.39 -0.02 2.38 16 35 H 0.09 3.03 6.18 -2.39 -0.01 3.02 16 36 H 0.05 1.85 7.88 -2.38 -0.02 1.84 16 37 H 0.13 2.71 8.14 -2.39 -0.02 2.70 16 38 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.04 1.53 7.74 -2.39 -0.02 1.52 16 40 H 0.24 16.12 8.31 -92.71 -0.77 15.35 16 41 H -0.03 -1.93 7.94 -2.39 -0.02 -1.95 16 42 H 0.04 2.82 6.23 -2.39 -0.01 2.80 16 43 H 0.13 4.56 7.17 -2.91 -0.02 4.54 16 44 H 0.17 1.97 8.06 -2.91 -0.02 1.95 16 45 H 0.20 0.07 8.06 -2.91 -0.02 0.04 16 46 H 0.22 0.14 7.94 -2.91 -0.02 0.11 16 Total: -1.00 -97.38 370.02 3.91 -93.47 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: 1.00 Total: 11.06 kcal Atomic # 6 Polarization: 24.29 SS G_CDS: 7.78 Total: 32.08 kcal Atomic # 7 Polarization: -148.57 SS G_CDS: -6.82 Total: -155.40 kcal Atomic # 8 Polarization: -32.51 SS G_CDS: -0.07 Total: -32.58 kcal Atomic # 14 Polarization: 49.34 SS G_CDS: 2.03 Total: 51.37 kcal Total: -97.38 3.91 -93.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076037155.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.213 kcal (2) G-P(sol) polarization free energy of solvation -97.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds