Wall clock time and date at job start Sat Apr 11 2020 06:04:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35448 * 125.68965 * 2 1 4 4 N 1.36427 * 107.22254 * 180.02562 * 3 2 1 5 5 C 1.36723 * 132.27086 * 180.02562 * 4 3 2 6 6 C 1.34547 * 120.95723 * 179.67605 * 5 4 3 7 7 C 1.41768 * 120.14422 * 0.55865 * 6 5 4 8 8 C 1.47658 * 120.36994 * 179.74118 * 7 6 5 9 9 O 1.21577 * 120.00001 * 26.47766 * 8 7 6 10 10 N 1.34781 * 119.99874 * 206.48206 * 8 7 6 11 11 C 1.47344 * 125.52284 * 356.24168 * 10 8 7 12 12 C 1.54949 * 104.89995 * 156.78302 * 11 10 8 13 13 C 1.54787 * 101.45542 * 37.25350 * 12 11 10 14 14 H 1.09004 * 112.84728 * 86.23687 * 13 12 11 15 15 C 1.53516 * 109.68707 * 212.92472 * 13 12 11 16 16 N 1.46650 * 107.05163 * 84.83216 * 15 13 12 17 17 C 1.36931 * 125.28989 * 197.40689 * 16 15 13 18 18 H 1.08002 * 120.00438 * 359.97438 * 17 16 15 19 19 C 1.38816 * 120.00261 * 179.97438 * 17 16 15 20 20 N 1.31626 * 119.99555 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00437 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47078 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47248 * 119.99967 * 21 19 17 24 24 H 1.48504 * 109.47148 * 240.00012 * 21 19 17 25 25 C 1.46495 * 109.42019 * 17.37941 * 16 15 13 26 26 C 1.48615 * 125.39822 * 176.98602 * 10 8 7 27 27 H 1.09002 * 113.54505 * 56.36486 * 26 10 8 28 28 C 1.38439 * 119.26039 * 359.47046 * 7 6 5 29 29 C 1.37200 * 106.97270 * 0.02562 * 4 3 2 30 30 N 1.32651 * 108.05476 * 359.97438 * 29 4 3 31 31 H 1.08989 * 109.47343 * 89.99735 * 1 2 3 32 32 H 1.08998 * 109.46797 * 210.00213 * 1 2 3 33 33 H 1.09001 * 109.47240 * 329.99329 * 1 2 3 34 34 H 1.07998 * 126.38894 * 0.07405 * 3 2 1 35 35 H 1.08006 * 119.52134 * 0.02562 * 5 4 3 36 36 H 1.08002 * 119.92441 * 180.30099 * 6 5 4 37 37 H 1.08993 * 110.35619 * 37.92606 * 11 10 8 38 38 H 1.09001 * 110.35513 * 275.63248 * 11 10 8 39 39 H 1.09002 * 111.02823 * 279.21269 * 12 11 10 40 40 H 1.08998 * 111.02842 * 155.29875 * 12 11 10 41 41 H 1.08998 * 109.91927 * 325.48229 * 15 13 12 42 42 H 1.09001 * 109.91883 * 204.18278 * 15 13 12 43 43 H 0.97001 * 119.99369 * 180.02562 * 20 19 17 44 44 H 1.09000 * 109.71039 * 117.77091 * 25 16 15 45 45 H 1.09004 * 109.71507 * 238.36280 * 25 16 15 46 46 H 1.07997 * 120.45657 * 180.27631 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2972 1.1001 0.0000 4 7 3.5912 0.6679 -0.0006 5 6 4.7840 1.3363 -0.0004 6 6 5.9518 0.6680 0.0054 7 6 5.9608 -0.7496 -0.0005 8 6 7.2395 -1.4880 0.0001 9 8 8.2359 -0.9779 0.4745 10 7 7.3021 -2.7276 -0.5254 11 6 6.1597 -3.4900 -1.0590 12 6 6.7862 -4.5114 -2.0414 13 6 8.0942 -4.8856 -1.3030 14 1 7.9576 -5.6920 -0.5824 15 6 9.1989 -5.1831 -2.3266 16 7 9.8037 -3.8981 -2.6924 17 6 10.5765 -3.6744 -3.8004 18 1 10.7828 -4.4821 -4.4870 19 6 11.0950 -2.4094 -4.0411 20 7 10.8433 -1.4249 -3.2046 21 14 12.1499 -2.1044 -5.5522 22 1 12.2827 -3.3649 -6.3259 23 1 11.5107 -1.0670 -6.4010 24 1 13.4956 -1.6388 -5.1307 25 6 9.4519 -2.8909 -1.6884 26 6 8.5337 -3.5507 -0.6451 27 1 9.0441 -3.7112 0.3046 28 6 4.7574 -1.4340 -0.0011 29 6 3.5555 -0.7036 -0.0015 30 7 2.2840 -1.0817 -0.0009 31 1 -0.3633 0.0000 -1.0275 32 1 -0.3633 -0.8900 0.5139 33 1 -0.3634 0.8899 0.5139 34 1 1.9649 2.1277 0.0011 35 1 4.7889 2.4163 0.0008 36 1 6.8843 1.2128 0.0104 37 1 5.4749 -2.8268 -1.5873 38 1 5.6404 -4.0087 -0.2530 39 1 6.9997 -4.0475 -3.0044 40 1 6.1427 -5.3827 -2.1628 41 1 8.7693 -5.6560 -3.2097 42 1 9.9514 -5.8345 -1.8822 43 1 11.2053 -0.5409 -3.3730 44 1 10.3563 -2.5243 -1.2029 45 1 8.9295 -2.0622 -2.1664 46 1 4.7418 -2.5139 -0.0011 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076240409.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:26 Heat of formation + Delta-G solvation = 108.135869 kcal Electronic energy + Delta-G solvation = -29728.664957 eV Core-core repulsion = 25814.160398 eV Total energy + Delta-G solvation = -3914.504559 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.99799 -40.25223 -38.26770 -36.96952 -35.11310 -33.81243 -32.21274 -31.91388 -30.68784 -29.68980 -28.53638 -27.79277 -26.69582 -24.59982 -24.22904 -23.15098 -22.37778 -21.13970 -20.48107 -19.67933 -18.85021 -18.16378 -17.21031 -16.79833 -16.59885 -16.21022 -15.60607 -15.31687 -14.89215 -14.70359 -14.52515 -14.09507 -13.83262 -13.50217 -13.42321 -13.31547 -13.22230 -12.85112 -12.69762 -12.47399 -12.21968 -12.04076 -11.71625 -11.57880 -11.41872 -11.16837 -11.10200 -10.98951 -10.79714 -10.43693 -10.29107 -10.19083 -10.05969 -9.87279 -9.72263 -9.65000 -8.87105 -8.58914 -8.28980 -8.00558 -6.80789 -5.67542 -3.03764 0.36932 0.96945 2.39919 2.55071 2.91663 3.09321 3.40582 3.45755 3.48612 3.58525 3.90899 4.21117 4.47811 4.49494 4.50719 4.72688 4.87310 4.93644 4.99054 5.06180 5.14678 5.20847 5.39475 5.41408 5.43673 5.51005 5.52824 5.55940 5.68632 5.73897 5.79180 5.79601 5.90481 5.92641 6.05089 6.15848 6.21818 6.35465 6.41573 6.51240 6.58029 6.61449 6.84248 6.84841 7.55217 7.62967 7.66643 7.85248 7.89937 8.29736 8.41909 9.23989 9.84881 10.47448 11.42052 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015469 B = 0.003021 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.618177 B = 9266.663690 C = 9915.313497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.056 3.944 3 C -0.098 4.098 4 N -0.352 5.352 5 C 0.043 3.957 6 C -0.090 4.090 7 C -0.097 4.097 8 C 0.573 3.427 9 O -0.520 6.520 10 N -0.598 5.598 11 C 0.091 3.909 12 C -0.121 4.121 13 C -0.112 4.112 14 H 0.089 0.911 15 C 0.145 3.855 16 N -0.602 5.602 17 C -0.232 4.232 18 H 0.079 0.921 19 C -0.007 4.007 20 N -0.914 5.914 21 Si 0.911 3.089 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.290 1.290 25 C 0.178 3.822 26 C 0.116 3.884 27 H 0.087 0.913 28 C -0.055 4.055 29 C 0.216 3.784 30 N -0.484 5.484 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.182 0.818 35 H 0.169 0.831 36 H 0.164 0.836 37 H 0.079 0.921 38 H 0.070 0.930 39 H 0.087 0.913 40 H 0.079 0.921 41 H 0.039 0.961 42 H 0.018 0.982 43 H 0.252 0.748 44 H 0.046 0.954 45 H 0.057 0.943 46 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.109 2.225 7.785 20.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.078 4.078 3 C -0.230 4.230 4 N -0.023 5.023 5 C -0.078 4.078 6 C -0.111 4.111 7 C -0.106 4.106 8 C 0.361 3.639 9 O -0.396 6.396 10 N -0.332 5.332 11 C -0.032 4.032 12 C -0.158 4.158 13 C -0.132 4.132 14 H 0.107 0.893 15 C 0.018 3.982 16 N -0.329 5.329 17 C -0.360 4.360 18 H 0.097 0.903 19 C -0.204 4.204 20 N -0.561 5.561 21 Si 0.741 3.259 22 H -0.205 1.205 23 H -0.218 1.218 24 H -0.217 1.217 25 C 0.053 3.947 26 C 0.014 3.986 27 H 0.105 0.895 28 C -0.076 4.076 29 C -0.026 4.026 30 N -0.205 5.205 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.199 0.801 35 H 0.186 0.814 36 H 0.181 0.819 37 H 0.097 0.903 38 H 0.088 0.912 39 H 0.106 0.894 40 H 0.098 0.902 41 H 0.057 0.943 42 H 0.035 0.965 43 H 0.062 0.938 44 H 0.064 0.936 45 H 0.075 0.925 46 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -18.730 2.012 7.970 20.454 hybrid contribution 0.855 1.237 -0.807 1.706 sum -17.875 3.248 7.163 19.529 Atomic orbital electron populations 1.20130 0.86815 1.03134 1.02786 1.20954 0.96883 0.87945 1.02068 1.22461 0.80815 1.01144 1.18607 1.42802 1.06176 1.08871 1.44475 1.21480 0.82463 0.98774 1.05125 1.20829 0.98047 0.92981 0.99216 1.20106 0.93268 0.94189 1.03009 1.17452 0.87345 0.80296 0.78854 1.90840 1.35972 1.67103 1.45667 1.48794 1.10256 1.14451 1.59699 1.22695 0.89480 0.94366 0.96671 1.22778 0.95861 0.98096 0.99106 1.22967 0.96121 0.96344 0.97774 0.89275 1.21079 0.92168 0.90202 0.94753 1.44139 1.58894 1.04207 1.25669 1.19051 1.23136 0.95028 0.98812 0.90296 1.24847 1.00757 0.95970 0.98783 1.70015 1.48522 1.01124 1.36471 0.86066 0.79917 0.77709 0.82173 1.20507 1.21834 1.21745 1.21269 0.95509 0.90793 0.87128 1.23163 0.85779 0.89583 1.00110 0.89501 1.21345 0.87121 1.01490 0.97626 1.20731 0.94209 0.80389 1.07257 1.70560 0.97984 1.29415 1.22498 0.90747 0.90667 0.90882 0.80083 0.81384 0.81867 0.90292 0.91170 0.89418 0.90230 0.94257 0.96466 0.93772 0.93600 0.92533 0.81484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.52 10.42 36.01 0.38 -0.14 16 2 C 0.06 0.63 7.06 -83.00 -0.59 0.05 16 3 C -0.10 -0.99 11.64 -16.50 -0.19 -1.19 16 4 N -0.35 -4.24 2.94 -62.75 -0.18 -4.43 16 5 C 0.04 0.45 10.91 -16.68 -0.18 0.27 16 6 C -0.09 -1.15 9.54 -39.54 -0.38 -1.53 16 7 C -0.10 -1.43 5.74 -104.63 -0.60 -2.03 16 8 C 0.57 10.46 7.35 -12.41 -0.09 10.37 16 9 O -0.52 -11.39 16.85 5.30 0.09 -11.30 16 10 N -0.60 -10.33 2.85 -162.01 -0.46 -10.79 16 11 C 0.09 1.21 5.01 -2.55 -0.01 1.20 16 12 C -0.12 -1.71 6.35 -24.76 -0.16 -1.86 16 13 C -0.11 -1.80 3.92 -88.26 -0.35 -2.15 16 14 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 15 C 0.14 2.85 6.51 -3.69 -0.02 2.83 16 16 N -0.60 -15.20 3.37 -172.28 -0.58 -15.78 16 17 C -0.23 -6.44 10.25 -15.06 -0.15 -6.59 16 18 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 19 C -0.01 -0.19 5.48 -17.43 -0.10 -0.29 16 20 N -0.91 -27.47 10.23 55.49 0.57 -26.90 16 21 Si 0.91 22.30 29.55 -169.99 -5.02 17.27 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 24 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 25 C 0.18 4.45 4.71 -3.60 -0.02 4.43 16 26 C 0.12 2.23 3.90 -65.17 -0.25 1.97 16 27 H 0.09 1.65 8.14 -51.93 -0.42 1.23 16 28 C -0.06 -0.74 8.06 -38.60 -0.31 -1.05 16 29 C 0.22 2.99 7.79 -155.96 -1.22 1.78 16 30 N -0.48 -6.79 11.31 -9.02 -0.10 -6.90 16 31 H 0.07 0.48 8.14 -51.94 -0.42 0.06 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.18 1.16 8.06 -52.49 -0.42 0.74 16 35 H 0.17 1.13 8.06 -52.48 -0.42 0.71 16 36 H 0.16 2.03 7.91 -52.49 -0.42 1.61 16 37 H 0.08 1.02 6.19 -51.93 -0.32 0.70 16 38 H 0.07 0.76 7.26 -51.93 -0.38 0.38 16 39 H 0.09 1.51 7.93 -51.93 -0.41 1.09 16 40 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 41 H 0.04 0.75 7.94 -51.93 -0.41 0.33 16 42 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 44 H 0.05 1.33 7.51 -51.93 -0.39 0.94 16 45 H 0.06 1.60 6.86 -51.93 -0.36 1.24 16 46 H 0.17 2.00 4.52 -52.49 -0.24 1.76 16 LS Contribution 368.44 15.07 5.55 5.55 Total: -1.00 -35.59 368.44 -10.66 -46.24 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: -6.27 Total: 0.98 kcal Atomic # 6 Polarization: 10.29 SS G_CDS: -4.24 Total: 6.05 kcal Atomic # 7 Polarization: -64.04 SS G_CDS: -0.76 Total: -64.80 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: 0.09 Total: -11.30 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.59 -10.66 -46.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076240409.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.380 kcal (2) G-P(sol) polarization free energy of solvation -35.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds