Wall clock time and date at job start Sat Apr 11 2020 06:04:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35448 * 125.68965 * 2 1 4 4 N 1.36427 * 107.22254 * 180.02562 * 3 2 1 5 5 C 1.36723 * 132.27086 * 180.02562 * 4 3 2 6 6 C 1.34547 * 120.95723 * 179.67605 * 5 4 3 7 7 C 1.41768 * 120.14422 * 0.55865 * 6 5 4 8 8 C 1.47658 * 120.36994 * 179.74118 * 7 6 5 9 9 O 1.21577 * 120.00001 * 26.47766 * 8 7 6 10 10 N 1.34781 * 119.99874 * 206.48206 * 8 7 6 11 11 C 1.47344 * 125.52284 * 356.24168 * 10 8 7 12 12 C 1.54949 * 104.89995 * 156.78302 * 11 10 8 13 13 C 1.54787 * 101.45542 * 37.25350 * 12 11 10 14 14 H 1.09004 * 112.84728 * 86.23687 * 13 12 11 15 15 C 1.53516 * 109.68707 * 212.92472 * 13 12 11 16 16 N 1.46650 * 107.05163 * 84.83216 * 15 13 12 17 17 C 1.36931 * 125.28989 * 197.40689 * 16 15 13 18 18 H 1.08002 * 120.00438 * 359.97438 * 17 16 15 19 19 C 1.38816 * 120.00261 * 179.97438 * 17 16 15 20 20 N 1.31626 * 119.99555 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00437 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47078 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47248 * 119.99967 * 21 19 17 24 24 H 1.48504 * 109.47148 * 240.00012 * 21 19 17 25 25 C 1.46495 * 109.42019 * 17.37941 * 16 15 13 26 26 C 1.48615 * 125.39822 * 176.98602 * 10 8 7 27 27 H 1.09002 * 113.54505 * 56.36486 * 26 10 8 28 28 C 1.38439 * 119.26039 * 359.47046 * 7 6 5 29 29 C 1.37200 * 106.97270 * 0.02562 * 4 3 2 30 30 N 1.32651 * 108.05476 * 359.97438 * 29 4 3 31 31 H 1.08989 * 109.47343 * 89.99735 * 1 2 3 32 32 H 1.08998 * 109.46797 * 210.00213 * 1 2 3 33 33 H 1.09001 * 109.47240 * 329.99329 * 1 2 3 34 34 H 1.07998 * 126.38894 * 0.07405 * 3 2 1 35 35 H 1.08006 * 119.52134 * 0.02562 * 5 4 3 36 36 H 1.08002 * 119.92441 * 180.30099 * 6 5 4 37 37 H 1.08993 * 110.35619 * 37.92606 * 11 10 8 38 38 H 1.09001 * 110.35513 * 275.63248 * 11 10 8 39 39 H 1.09002 * 111.02823 * 279.21269 * 12 11 10 40 40 H 1.08998 * 111.02842 * 155.29875 * 12 11 10 41 41 H 1.08998 * 109.91927 * 325.48229 * 15 13 12 42 42 H 1.09001 * 109.91883 * 204.18278 * 15 13 12 43 43 H 0.97001 * 119.99369 * 180.02562 * 20 19 17 44 44 H 1.09000 * 109.71039 * 117.77091 * 25 16 15 45 45 H 1.09004 * 109.71507 * 238.36280 * 25 16 15 46 46 H 1.07997 * 120.45657 * 180.27631 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2972 1.1001 0.0000 4 7 3.5912 0.6679 -0.0006 5 6 4.7840 1.3363 -0.0004 6 6 5.9518 0.6680 0.0054 7 6 5.9608 -0.7496 -0.0005 8 6 7.2395 -1.4880 0.0001 9 8 8.2359 -0.9779 0.4745 10 7 7.3021 -2.7276 -0.5254 11 6 6.1597 -3.4900 -1.0590 12 6 6.7862 -4.5114 -2.0414 13 6 8.0942 -4.8856 -1.3030 14 1 7.9576 -5.6920 -0.5824 15 6 9.1989 -5.1831 -2.3266 16 7 9.8037 -3.8981 -2.6924 17 6 10.5765 -3.6744 -3.8004 18 1 10.7828 -4.4821 -4.4870 19 6 11.0950 -2.4094 -4.0411 20 7 10.8433 -1.4249 -3.2046 21 14 12.1499 -2.1044 -5.5522 22 1 12.2827 -3.3649 -6.3259 23 1 11.5107 -1.0670 -6.4010 24 1 13.4956 -1.6388 -5.1307 25 6 9.4519 -2.8909 -1.6884 26 6 8.5337 -3.5507 -0.6451 27 1 9.0441 -3.7112 0.3046 28 6 4.7574 -1.4340 -0.0011 29 6 3.5555 -0.7036 -0.0015 30 7 2.2840 -1.0817 -0.0009 31 1 -0.3633 0.0000 -1.0275 32 1 -0.3633 -0.8900 0.5139 33 1 -0.3634 0.8899 0.5139 34 1 1.9649 2.1277 0.0011 35 1 4.7889 2.4163 0.0008 36 1 6.8843 1.2128 0.0104 37 1 5.4749 -2.8268 -1.5873 38 1 5.6404 -4.0087 -0.2530 39 1 6.9997 -4.0475 -3.0044 40 1 6.1427 -5.3827 -2.1628 41 1 8.7693 -5.6560 -3.2097 42 1 9.9514 -5.8345 -1.8822 43 1 11.2053 -0.5409 -3.3730 44 1 10.3563 -2.5243 -1.2029 45 1 8.9295 -2.0622 -2.1664 46 1 4.7418 -2.5139 -0.0011 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001076240409.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:25 Heat of formation + Delta-G solvation = 85.716742 kcal Electronic energy + Delta-G solvation = -29729.637124 eV Core-core repulsion = 25814.160398 eV Total energy + Delta-G solvation = -3915.476726 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.89663 -41.64562 -39.65393 -38.08144 -36.75312 -34.97609 -33.94066 -32.69761 -32.26586 -30.94422 -29.94120 -28.86994 -28.07031 -26.51072 -25.32482 -24.18373 -23.54143 -22.43041 -21.85362 -21.01218 -20.27345 -19.20758 -18.84227 -18.16863 -17.78929 -17.28248 -16.99624 -16.63410 -16.41095 -15.94578 -15.83795 -15.37315 -15.17467 -15.00384 -14.54942 -14.32891 -14.10890 -14.03301 -13.95325 -13.73848 -13.52364 -13.28504 -13.10103 -12.93803 -12.84744 -12.74920 -12.57383 -12.43856 -12.17909 -12.07776 -11.87728 -11.72728 -11.51525 -11.45280 -11.22516 -11.10362 -10.73645 -9.81010 -9.69097 -8.92162 -8.88931 -7.84742 -5.23397 -0.62903 0.03291 1.41998 1.43855 1.51954 1.54334 1.56266 1.76341 1.90006 2.47193 2.48098 2.92231 3.30292 3.31951 3.40661 3.57783 3.65434 3.69636 3.76760 3.90543 3.99744 4.21737 4.24421 4.29268 4.31504 4.33278 4.45555 4.48071 4.56613 4.68324 4.81350 4.83457 4.89908 4.90968 4.94255 4.98719 5.06460 5.13048 5.14473 5.16912 5.31593 5.44573 5.48912 5.57149 5.65373 5.77967 5.98203 6.18478 6.45078 6.77965 7.01219 7.08294 7.77822 8.38699 9.23466 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015469 B = 0.003021 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.618177 B = 9266.663690 C = 9915.313497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.037 3.963 3 C -0.081 4.081 4 N -0.359 5.359 5 C 0.065 3.935 6 C -0.116 4.116 7 C -0.117 4.117 8 C 0.565 3.435 9 O -0.574 6.574 10 N -0.601 5.601 11 C 0.089 3.911 12 C -0.113 4.113 13 C -0.093 4.093 14 H 0.138 0.862 15 C 0.136 3.864 16 N -0.623 5.623 17 C -0.239 4.239 18 H 0.090 0.910 19 C -0.072 4.072 20 N -0.951 5.951 21 Si 0.979 3.021 22 H -0.259 1.259 23 H -0.294 1.294 24 H -0.296 1.296 25 C 0.200 3.800 26 C 0.118 3.882 27 H 0.085 0.915 28 C -0.043 4.043 29 C 0.185 3.815 30 N -0.506 5.506 31 H 0.083 0.917 32 H 0.070 0.930 33 H 0.100 0.900 34 H 0.224 0.776 35 H 0.212 0.788 36 H 0.156 0.844 37 H 0.083 0.917 38 H 0.112 0.888 39 H 0.050 0.950 40 H 0.127 0.873 41 H 0.053 0.947 42 H 0.025 0.975 43 H 0.242 0.758 44 H -0.014 1.014 45 H 0.011 0.989 46 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.699 1.301 7.640 23.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.097 4.097 3 C -0.213 4.213 4 N -0.030 5.030 5 C -0.056 4.056 6 C -0.137 4.137 7 C -0.126 4.126 8 C 0.355 3.645 9 O -0.454 6.454 10 N -0.333 5.333 11 C -0.032 4.032 12 C -0.151 4.151 13 C -0.112 4.112 14 H 0.155 0.845 15 C 0.011 3.989 16 N -0.349 5.349 17 C -0.368 4.368 18 H 0.108 0.892 19 C -0.265 4.265 20 N -0.600 5.600 21 Si 0.808 3.192 22 H -0.183 1.183 23 H -0.221 1.221 24 H -0.223 1.223 25 C 0.074 3.926 26 C 0.015 3.985 27 H 0.103 0.897 28 C -0.064 4.064 29 C -0.056 4.056 30 N -0.228 5.228 31 H 0.102 0.898 32 H 0.089 0.911 33 H 0.119 0.881 34 H 0.241 0.759 35 H 0.229 0.771 36 H 0.174 0.826 37 H 0.101 0.899 38 H 0.130 0.870 39 H 0.069 0.931 40 H 0.145 0.855 41 H 0.072 0.928 42 H 0.043 0.957 43 H 0.051 0.949 44 H 0.004 0.996 45 H 0.030 0.970 46 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -22.366 1.011 7.808 23.712 hybrid contribution 1.848 1.530 -0.762 2.517 sum -20.519 2.541 7.046 21.843 Atomic orbital electron populations 1.20259 0.84256 1.04323 1.03729 1.21707 0.98622 0.87600 1.01738 1.23252 0.79616 1.02844 1.15628 1.43057 1.07192 1.08529 1.44253 1.21941 0.81153 1.00319 1.02146 1.20837 0.99033 0.92404 1.01447 1.19836 0.91939 0.94913 1.05922 1.18087 0.88091 0.80415 0.77875 1.90792 1.38154 1.68300 1.48196 1.48875 1.10690 1.14464 1.59260 1.23006 0.88282 0.94088 0.97807 1.22784 0.95600 0.99641 0.97081 1.23030 0.95490 0.95336 0.97354 0.84460 1.21364 0.93328 0.87787 0.96447 1.44442 1.58931 1.06479 1.25087 1.19521 1.22584 0.95192 0.99488 0.89235 1.25763 1.02752 0.96004 1.01952 1.70310 1.50045 1.01098 1.38523 0.84990 0.77530 0.78020 0.78690 1.18290 1.22120 1.22291 1.20783 0.93684 0.90415 0.87763 1.22916 0.85980 0.91360 0.98292 0.89697 1.21340 0.86554 1.01997 0.96461 1.20793 0.94255 0.81476 1.09090 1.70533 0.98357 1.31073 1.22793 0.89819 0.91088 0.88135 0.75929 0.77101 0.82645 0.89891 0.87017 0.93073 0.85453 0.92845 0.95672 0.94879 0.99552 0.97032 0.80343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.77 10.42 71.24 0.74 -0.03 16 2 C 0.04 0.73 7.06 41.71 0.29 1.03 16 3 C -0.08 -1.35 11.64 83.33 0.97 -0.38 16 4 N -0.36 -7.82 2.94 -352.43 -1.04 -8.85 16 5 C 0.06 1.26 10.91 83.09 0.91 2.17 16 6 C -0.12 -3.09 9.54 22.30 0.21 -2.87 16 7 C -0.12 -3.61 5.74 -19.87 -0.11 -3.72 16 8 C 0.57 22.02 7.35 86.73 0.64 22.66 16 9 O -0.57 -27.60 16.85 -3.96 -0.07 -27.66 16 10 N -0.60 -21.28 2.85 -784.75 -2.24 -23.51 16 11 C 0.09 2.22 5.01 86.88 0.43 2.66 16 12 C -0.11 -2.92 6.35 31.87 0.20 -2.72 16 13 C -0.09 -2.78 3.92 -9.27 -0.04 -2.81 16 14 H 0.14 2.92 8.14 -2.38 -0.02 2.90 16 15 C 0.14 5.22 6.51 86.52 0.56 5.78 16 16 N -0.62 -32.57 3.37 -698.97 -2.36 -34.93 16 17 C -0.24 -13.64 10.25 84.04 0.86 -12.78 16 18 H 0.09 4.79 7.83 -2.91 -0.02 4.77 16 19 C -0.07 -4.27 5.48 84.86 0.47 -3.81 16 20 N -0.95 -61.20 10.23 21.65 0.22 -60.98 16 21 Si 0.98 47.43 29.55 68.60 2.03 49.46 16 22 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 23 H -0.29 -14.24 7.11 99.48 0.71 -13.54 16 24 H -0.30 -14.44 7.11 99.48 0.71 -13.74 16 25 C 0.20 10.70 4.71 86.67 0.41 11.11 16 26 C 0.12 4.67 3.90 45.62 0.18 4.85 16 27 H 0.09 3.36 8.14 -2.39 -0.02 3.34 16 28 C -0.04 -1.13 8.06 22.91 0.18 -0.95 16 29 C 0.18 4.87 7.79 133.97 1.04 5.91 16 30 N -0.51 -13.26 11.31 -182.45 -2.06 -15.32 16 31 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.22 1.62 8.06 -2.91 -0.02 1.60 16 35 H 0.21 2.12 8.06 -2.91 -0.02 2.10 16 36 H 0.16 4.25 7.91 -2.91 -0.02 4.23 16 37 H 0.08 2.05 6.19 -2.39 -0.01 2.03 16 38 H 0.11 1.95 7.26 -2.39 -0.02 1.93 16 39 H 0.05 1.72 7.93 -2.39 -0.02 1.70 16 40 H 0.13 2.13 8.14 -2.39 -0.02 2.11 16 41 H 0.05 1.92 7.94 -2.39 -0.02 1.90 16 42 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.24 15.28 8.31 -92.71 -0.77 14.51 16 44 H -0.01 -0.88 7.51 -2.39 -0.02 -0.90 16 45 H 0.01 0.71 6.86 -2.38 -0.02 0.69 16 46 H 0.18 4.00 4.52 -2.91 -0.01 3.99 16 Total: -1.00 -87.18 368.44 3.45 -83.74 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: 1.00 Total: 11.97 kcal Atomic # 6 Polarization: 18.14 SS G_CDS: 7.95 Total: 26.10 kcal Atomic # 7 Polarization: -136.13 SS G_CDS: -7.47 Total: -143.60 kcal Atomic # 8 Polarization: -27.60 SS G_CDS: -0.07 Total: -27.66 kcal Atomic # 14 Polarization: 47.43 SS G_CDS: 2.03 Total: 49.46 kcal Total: -87.18 3.45 -83.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076240409.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.454 kcal (2) G-P(sol) polarization free energy of solvation -87.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds