Wall clock time and date at job start Sat Apr 11 2020 06:04:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35364 * 126.38298 * 2 1 4 4 C 1.41503 * 105.50024 * 180.02562 * 3 2 1 5 5 C 1.47706 * 126.51915 * 180.02562 * 4 3 2 6 6 O 1.21581 * 119.99838 * 0.02562 * 5 4 3 7 7 N 1.34778 * 120.00348 * 180.02562 * 5 4 3 8 8 C 1.47023 * 125.64922 * 180.02562 * 7 5 4 9 9 C 1.54316 * 107.27012 * 178.99865 * 8 7 5 10 10 H 1.09002 * 110.72300 * 96.16750 * 9 8 7 11 11 C 1.50702 * 110.87180 * 219.37023 * 9 8 7 12 12 C 1.38238 * 119.99869 * 53.33409 * 11 9 8 13 13 C 1.38236 * 119.99705 * 179.80947 * 12 11 9 14 14 C 1.38225 * 120.00409 * 0.42195 * 13 12 11 15 15 C 1.38244 * 119.99963 * 359.80873 * 14 13 12 16 16 C 1.38233 * 120.00310 * 233.60594 * 11 9 8 17 17 C 1.55154 * 102.94315 * 337.80284 * 9 8 7 18 18 H 1.09000 * 111.00667 * 277.39197 * 17 9 8 19 19 N 1.46506 * 111.00704 * 153.57739 * 17 9 8 20 20 C 1.36939 * 120.00073 * 157.90566 * 19 17 9 21 21 H 1.08004 * 119.99859 * 0.02562 * 20 19 17 22 22 C 1.38805 * 119.99849 * 180.02562 * 20 19 17 23 23 N 1.31622 * 120.00455 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00168 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.46991 * 59.99625 * 24 22 20 26 26 H 1.48497 * 109.47469 * 179.97438 * 24 22 20 27 27 H 1.48499 * 109.46948 * 299.99895 * 24 22 20 28 28 C 1.47460 * 125.62760 * 0.02731 * 7 5 4 29 29 N 1.31811 * 106.96387 * 0.26737 * 4 3 2 30 30 N 1.28466 * 110.07333 * 359.55252 * 29 4 3 31 31 H 0.96998 * 124.88787 * 180.20483 * 30 29 4 32 32 H 1.09002 * 109.47564 * 89.99465 * 1 2 3 33 33 H 1.09006 * 109.46995 * 209.99945 * 1 2 3 34 34 H 1.08997 * 109.47185 * 329.99192 * 1 2 3 35 35 H 1.07994 * 127.24982 * 0.03062 * 3 2 1 36 36 H 1.08997 * 109.88527 * 59.57629 * 8 7 5 37 37 H 1.09001 * 110.00748 * 298.48386 * 8 7 5 38 38 H 1.07996 * 119.99954 * 0.02562 * 12 11 9 39 39 H 1.08001 * 119.99563 * 180.21088 * 13 12 11 40 40 H 1.08002 * 120.00241 * 179.79012 * 14 13 12 41 41 H 1.07997 * 120.00288 * 179.97438 * 15 14 13 42 42 H 1.08003 * 119.99683 * 359.97438 * 16 11 9 43 43 H 0.97005 * 119.99811 * 338.18360 * 19 17 9 44 44 H 0.97000 * 120.00679 * 179.97438 * 23 22 20 45 45 H 1.08997 * 110.35458 * 85.22858 * 28 7 5 46 46 H 1.09003 * 110.40549 * 322.89149 * 28 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3100 1.0898 0.0000 4 6 3.6321 0.5854 -0.0006 5 6 4.8764 1.3811 -0.0003 6 8 4.8213 2.5957 0.0010 7 7 6.0730 0.7609 -0.0015 8 6 7.3836 1.4273 -0.0008 9 6 8.4598 0.3216 0.0230 10 1 8.8150 0.1073 -0.9849 11 6 9.6075 0.7087 0.9197 12 6 9.3656 1.0901 2.2263 13 6 10.4188 1.4413 3.0499 14 6 11.7128 1.4196 2.5646 15 6 11.9543 1.0428 1.2566 16 6 10.9015 0.6877 0.4342 17 6 7.6944 -0.8958 0.6057 18 1 7.6591 -0.8506 1.6942 19 7 8.2901 -2.1558 0.1542 20 6 8.0862 -3.3050 0.8705 21 1 7.4857 -3.2825 1.7680 22 6 8.6511 -4.4987 0.4430 23 7 9.3824 -4.5262 -0.6510 24 14 8.3723 -6.0665 1.4196 25 1 6.9178 -6.3595 1.4808 26 1 9.0765 -7.1939 0.7576 27 1 8.9005 -5.8924 2.7965 28 6 6.2841 -0.6985 -0.0037 29 7 3.5420 -0.7296 -0.0068 30 7 2.3081 -1.0871 -0.0006 31 1 1.9966 -2.0057 -0.0005 32 1 -0.3634 0.0001 -1.0277 33 1 -0.3633 -0.8900 0.5139 34 1 -0.3633 0.8899 0.5139 35 1 2.0057 2.1260 0.0005 36 1 7.4790 2.0567 0.8839 37 1 7.4944 2.0331 -0.9002 38 1 8.3542 1.1103 2.6045 39 1 10.2301 1.7361 4.0717 40 1 12.5353 1.6973 3.2072 41 1 12.9653 1.0262 0.8773 42 1 11.0901 0.3936 -0.5878 43 1 8.8324 -2.1752 -0.6498 44 1 9.7774 -5.3602 -0.9496 45 1 6.2540 -1.0844 -1.0227 46 1 5.5323 -1.1922 0.6121 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001081092880.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:30 Heat of formation + Delta-G solvation = 85.488039 kcal Electronic energy + Delta-G solvation = -29203.107574 eV Core-core repulsion = 25287.620932 eV Total energy + Delta-G solvation = -3915.486643 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.67536 -39.92652 -38.70432 -37.03637 -34.05946 -33.06456 -32.42210 -31.73003 -30.86741 -30.60148 -28.48832 -27.44174 -27.02914 -24.83048 -23.60303 -22.63948 -22.16663 -21.27343 -20.97609 -19.68115 -18.80482 -17.76967 -17.33540 -16.63997 -16.38246 -15.96906 -15.55744 -15.22093 -14.74733 -14.61936 -14.35176 -13.95312 -13.71670 -13.37346 -13.35354 -13.18360 -13.11925 -13.03231 -12.80185 -12.75974 -12.43967 -12.33449 -12.05008 -11.65292 -11.47012 -10.94391 -10.88237 -10.75070 -10.71870 -10.48814 -10.26628 -10.12221 -9.92934 -9.73267 -9.39290 -9.02281 -8.99951 -8.60209 -8.37298 -8.21730 -7.04284 -5.82204 -3.12016 1.66713 1.67192 1.72737 2.05514 2.78440 3.27901 3.40273 3.45472 3.45896 3.59766 4.07492 4.41540 4.54184 4.55496 4.78388 4.93032 5.04621 5.12665 5.19032 5.26386 5.30152 5.37845 5.41150 5.50903 5.55298 5.57478 5.63229 5.74860 5.80498 5.82278 5.87882 5.91557 6.05174 6.17740 6.26353 6.31438 6.36651 6.40776 6.54437 6.65298 6.76735 6.79015 6.85441 6.98377 7.01563 7.31674 7.65502 7.75974 7.89085 8.34536 8.41073 9.47125 10.00049 10.35671 11.39825 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.007624 B = 0.004241 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3671.584356 B = 6600.739635 C = 9597.532752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.006 3.994 3 C -0.181 4.181 4 C -0.006 4.006 5 C 0.612 3.388 6 O -0.547 6.547 7 N -0.600 5.600 8 C 0.122 3.878 9 C -0.076 4.076 10 H 0.093 0.907 11 C -0.050 4.050 12 C -0.113 4.113 13 C -0.121 4.121 14 C -0.131 4.131 15 C -0.120 4.120 16 C -0.106 4.106 17 C 0.183 3.817 18 H 0.068 0.932 19 N -0.706 5.706 20 C -0.242 4.242 21 H 0.070 0.930 22 C -0.007 4.007 23 N -0.930 5.930 24 Si 0.906 3.094 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.285 1.285 28 C 0.076 3.924 29 N -0.240 5.240 30 N -0.382 5.382 31 H 0.444 0.556 32 H 0.077 0.923 33 H 0.070 0.930 34 H 0.085 0.915 35 H 0.160 0.840 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.119 0.881 39 H 0.116 0.884 40 H 0.115 0.885 41 H 0.117 0.883 42 H 0.121 0.879 43 H 0.387 0.613 44 H 0.256 0.744 45 H 0.069 0.931 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.128 11.072 2.118 15.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.119 4.119 3 C -0.209 4.209 4 C -0.167 4.167 5 C 0.399 3.601 6 O -0.424 6.424 7 N -0.333 5.333 8 C -0.001 4.001 9 C -0.096 4.096 10 H 0.111 0.889 11 C -0.050 4.050 12 C -0.131 4.131 13 C -0.139 4.139 14 C -0.149 4.149 15 C -0.138 4.138 16 C -0.124 4.124 17 C 0.071 3.929 18 H 0.085 0.915 19 N -0.346 5.346 20 C -0.373 4.373 21 H 0.088 0.912 22 C -0.203 4.203 23 N -0.577 5.577 24 Si 0.737 3.263 25 H -0.213 1.213 26 H -0.217 1.217 27 H -0.212 1.212 28 C -0.049 4.049 29 N -0.076 5.076 30 N -0.097 5.097 31 H 0.289 0.711 32 H 0.096 0.904 33 H 0.089 0.911 34 H 0.104 0.896 35 H 0.178 0.822 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.137 0.863 39 H 0.134 0.866 40 H 0.133 0.867 41 H 0.135 0.865 42 H 0.139 0.861 43 H 0.221 0.779 44 H 0.066 0.934 45 H 0.088 0.912 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -9.561 10.661 2.218 14.491 hybrid contribution -0.568 -0.958 0.195 1.131 sum -10.129 9.703 2.412 14.233 Atomic orbital electron populations 1.20331 0.86714 1.03852 1.03258 1.21449 0.95322 0.87314 1.07814 1.21466 0.90441 0.99576 1.09382 1.21862 0.94909 0.89793 1.10128 1.16542 0.80823 0.85835 0.76874 1.90761 1.86570 1.12802 1.52282 1.48338 1.04552 1.09475 1.70897 1.21971 0.81119 0.94807 1.02198 1.21568 0.92614 0.95899 0.99544 0.88859 1.19536 0.93956 0.97344 0.94153 1.20967 0.99059 0.99558 0.93538 1.21031 0.92880 1.00637 0.99326 1.21040 0.96648 1.01336 0.95838 1.21066 0.98728 0.99800 0.94176 1.21042 0.92091 0.99228 1.00073 1.21412 0.88994 0.85521 0.97020 0.91453 1.42224 1.59234 1.02489 1.30630 1.19160 1.26512 0.86170 1.05482 0.91156 1.24709 1.00075 0.97771 0.97756 1.69642 1.37728 1.26403 1.23961 0.86297 0.77519 0.83218 0.79304 1.21293 1.21681 1.21211 1.23679 1.01243 0.77508 1.02486 1.73889 1.00788 1.14912 1.17994 1.43478 1.03174 1.09578 1.53472 0.71129 0.90384 0.91148 0.89633 0.82210 0.91035 0.91400 0.86332 0.86553 0.86696 0.86462 0.86079 0.77860 0.93381 0.91234 0.89247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.48 10.44 36.01 0.38 -0.10 16 2 C 0.01 0.07 7.23 -82.21 -0.59 -0.53 16 3 C -0.18 -2.35 10.73 -39.36 -0.42 -2.78 16 4 C -0.01 -0.10 6.97 -82.77 -0.58 -0.67 16 5 C 0.61 10.95 7.86 -12.39 -0.10 10.85 16 6 O -0.55 -10.76 17.25 5.29 0.09 -10.67 16 7 N -0.60 -10.34 3.33 -171.67 -0.57 -10.91 16 8 C 0.12 1.93 6.34 -3.07 -0.02 1.91 16 9 C -0.08 -1.26 2.80 -89.94 -0.25 -1.51 16 10 H 0.09 1.54 7.80 -51.93 -0.41 1.14 16 11 C -0.05 -0.80 4.95 -104.62 -0.52 -1.32 16 12 C -0.11 -1.74 8.12 -39.58 -0.32 -2.06 16 13 C -0.12 -1.68 10.05 -39.59 -0.40 -2.08 16 14 C -0.13 -1.75 10.05 -39.58 -0.40 -2.15 16 15 C -0.12 -1.68 10.05 -39.58 -0.40 -2.08 16 16 C -0.11 -1.65 9.68 -39.59 -0.38 -2.03 16 17 C 0.18 3.54 3.09 -65.79 -0.20 3.34 16 18 H 0.07 1.36 7.19 -51.93 -0.37 0.99 16 19 N -0.71 -16.78 5.26 -51.36 -0.27 -17.05 16 20 C -0.24 -6.44 9.97 -15.06 -0.15 -6.59 16 21 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 22 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 23 N -0.93 -27.11 13.06 55.49 0.72 -26.39 16 24 Si 0.91 21.86 29.55 -169.99 -5.02 16.84 16 25 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 26 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 27 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 28 C 0.08 1.40 5.84 -2.52 -0.01 1.39 16 29 N -0.24 -3.65 9.35 33.42 0.31 -3.34 16 30 N -0.38 -4.29 6.83 33.50 0.23 -4.06 16 31 H 0.44 3.47 8.96 -190.44 -1.71 1.76 16 32 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.16 1.87 8.06 -52.49 -0.42 1.45 16 36 H 0.07 1.11 6.67 -51.93 -0.35 0.76 16 37 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.12 1.75 7.30 -52.49 -0.38 1.36 16 39 H 0.12 1.35 8.06 -52.49 -0.42 0.92 16 40 H 0.11 1.25 8.06 -52.49 -0.42 0.83 16 41 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 42 H 0.12 1.77 7.98 -52.48 -0.42 1.35 16 43 H 0.39 9.78 7.73 -40.82 -0.32 9.46 16 44 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 45 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 46 H 0.09 1.70 6.21 -51.93 -0.32 1.38 16 LS Contribution 384.53 15.07 5.79 5.79 Total: -1.00 -33.07 384.53 -10.80 -43.87 By element: Atomic # 1 Polarization: 20.23 SS G_CDS: -7.62 Total: 12.61 kcal Atomic # 6 Polarization: -2.23 SS G_CDS: -4.47 Total: -6.70 kcal Atomic # 7 Polarization: -62.17 SS G_CDS: 0.42 Total: -61.75 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: 0.09 Total: -10.67 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.07 -10.80 -43.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081092880.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.358 kcal (2) G-P(sol) polarization free energy of solvation -33.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds