Wall clock time and date at job start Sat Apr 11 2020 06:04:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35360 * 127.25137 * 2 1 4 4 N 1.35038 * 107.23198 * 179.97438 * 3 2 1 5 5 H 0.96996 * 124.88623 * 180.02562 * 4 3 2 6 6 N 1.28467 * 110.22618 * 359.72231 * 4 3 2 7 7 C 1.31805 * 110.07533 * 0.45817 * 6 4 3 8 8 C 1.47717 * 126.52189 * 179.82430 * 7 6 4 9 9 O 1.21566 * 120.00177 * 179.68815 * 8 7 6 10 10 N 1.34778 * 119.99470 * 359.68015 * 8 7 6 11 11 C 1.47431 * 125.64579 * 180.02562 * 10 8 7 12 12 C 1.55392 * 104.87127 * 204.10006 * 11 10 8 13 13 H 1.09001 * 111.02055 * 80.98222 * 12 11 10 14 14 C 1.50699 * 111.18654 * 204.97965 * 12 11 10 15 15 C 1.38236 * 119.99819 * 51.76296 * 14 12 11 16 16 C 1.38235 * 119.99730 * 179.81162 * 15 14 12 17 17 C 1.38241 * 120.00077 * 0.39927 * 16 15 14 18 18 C 1.38227 * 119.99789 * 359.85544 * 17 16 15 19 19 C 1.38233 * 120.00097 * 232.04041 * 14 12 11 20 20 C 1.55157 * 101.36576 * 323.01456 * 12 11 10 21 21 H 1.09002 * 110.72219 * 277.04408 * 20 12 11 22 22 N 1.46505 * 110.71610 * 153.94856 * 20 12 11 23 23 C 1.36938 * 119.99525 * 157.44128 * 22 20 12 24 24 H 1.08006 * 120.00198 * 0.02562 * 23 22 20 25 25 C 1.38814 * 119.99618 * 179.97438 * 23 22 20 26 26 N 1.31611 * 120.00172 * 0.02562 * 25 23 22 27 27 Si 1.86798 * 119.99664 * 180.02562 * 25 23 22 28 28 H 1.48508 * 109.47451 * 0.02562 * 27 25 23 29 29 H 1.48503 * 109.47040 * 120.00056 * 27 25 23 30 30 H 1.48506 * 109.47158 * 239.99841 * 27 25 23 31 31 C 1.47019 * 125.65277 * 359.97438 * 10 8 7 32 32 H 1.09000 * 109.47678 * 270.00729 * 1 2 3 33 33 H 1.09005 * 109.46656 * 30.01034 * 1 2 3 34 34 H 1.09000 * 109.47197 * 150.00427 * 1 2 3 35 35 H 1.08007 * 126.38496 * 359.96676 * 3 2 1 36 36 H 1.08999 * 110.36190 * 322.93058 * 11 10 8 37 37 H 1.08998 * 110.36491 * 85.14737 * 11 10 8 38 38 H 1.07997 * 120.00515 * 0.02562 * 15 14 12 39 39 H 1.08001 * 120.00177 * 180.23587 * 16 15 14 40 40 H 1.08001 * 119.99606 * 179.83787 * 17 16 15 41 41 H 1.08002 * 120.00066 * 179.97438 * 18 17 16 42 42 H 1.08003 * 120.00144 * 359.97438 * 19 14 12 43 43 H 0.96996 * 120.00388 * 337.43707 * 22 20 12 44 44 H 0.97004 * 120.00220 * 179.97438 * 26 25 23 45 45 H 1.09001 * 109.88251 * 59.55144 * 31 10 8 46 46 H 1.09003 * 110.01193 * 298.46519 * 31 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3263 1.0775 0.0000 4 7 3.5951 0.6152 0.0006 5 1 4.3887 1.1728 0.0011 6 7 3.5997 -0.6695 0.0068 7 6 2.3635 -1.1264 0.0007 8 6 1.9504 -2.5447 0.0011 9 8 0.7696 -2.8339 0.0007 10 7 2.8827 -3.5180 0.0017 11 6 2.6118 -4.9672 0.0016 12 6 3.8858 -5.6111 0.6156 13 1 3.8675 -5.5530 1.7039 14 6 4.0514 -7.0365 0.1556 15 6 4.0119 -7.3365 -1.1932 16 6 4.1677 -8.6435 -1.6154 17 6 4.3547 -9.6517 -0.6883 18 6 4.3889 -9.3525 0.6607 19 6 4.2370 -8.0449 1.0828 20 6 4.9998 -4.7044 0.0289 21 1 5.2668 -5.0242 -0.9783 22 7 6.1782 -4.7020 0.8994 23 6 7.4056 -4.3728 0.3892 24 1 7.5048 -4.1145 -0.6548 25 6 8.5220 -4.3700 1.2142 26 7 8.4009 -4.6842 2.4865 27 14 10.1962 -3.9202 0.5184 28 1 10.0640 -3.6090 -0.9277 29 1 10.7263 -2.7316 1.2335 30 1 11.1292 -5.0618 0.6963 31 6 4.3382 -3.3105 0.0015 32 1 -0.3634 0.0001 1.0276 33 1 -0.3633 0.8900 -0.5140 34 1 -0.3633 -0.8900 -0.5138 35 1 2.0220 2.1138 -0.0005 36 1 1.7403 -5.1901 0.6171 37 1 2.4577 -5.3242 -1.0167 38 1 3.8628 -6.5493 -1.9174 39 1 4.1407 -8.8774 -2.6695 40 1 4.4738 -10.6733 -1.0181 41 1 4.5346 -10.1402 1.3851 42 1 4.2638 -7.8111 2.1368 43 1 6.0889 -4.9335 1.8371 44 1 9.1811 -4.6826 3.0629 45 1 4.6319 -2.7433 0.8847 46 1 4.6385 -2.7751 -0.8993 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001081115726.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:33 Heat of formation + Delta-G solvation = 85.535725 kcal Electronic energy + Delta-G solvation = -29372.160048 eV Core-core repulsion = 25456.675473 eV Total energy + Delta-G solvation = -3915.484575 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.62295 -39.89173 -38.71336 -37.05648 -34.06329 -33.00416 -32.68589 -31.16611 -30.86694 -30.61057 -28.34646 -27.33949 -27.07753 -24.78652 -23.58752 -22.76337 -22.17295 -20.97759 -20.61720 -19.70299 -18.94414 -17.96354 -17.35311 -16.77160 -16.55089 -15.89374 -15.51521 -15.17549 -14.76929 -14.60169 -14.33675 -13.78682 -13.57522 -13.35498 -13.17910 -13.08881 -13.05266 -12.90565 -12.79058 -12.48981 -12.46760 -12.12567 -12.02820 -11.58336 -11.48353 -10.92888 -10.89624 -10.73524 -10.71378 -10.51441 -10.28465 -10.08107 -9.83881 -9.72202 -9.38146 -9.02376 -8.86578 -8.60916 -8.34743 -8.21789 -7.04936 -5.82355 -3.12061 1.65242 1.71507 1.72164 2.09425 2.85115 3.30603 3.39347 3.45682 3.47416 3.59780 4.06213 4.47963 4.54971 4.74007 4.94141 5.02971 5.06508 5.20688 5.25052 5.28465 5.36918 5.37986 5.51428 5.54234 5.63324 5.72159 5.78048 5.79616 5.86269 5.88148 5.91715 6.04364 6.15367 6.17107 6.28021 6.35680 6.40732 6.46369 6.60193 6.62029 6.74835 6.78345 6.87633 6.99871 7.01917 7.30639 7.66165 7.78215 7.90592 8.34415 8.42506 9.47069 10.00328 10.35726 11.39824 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.007720 B = 0.004386 C = 0.002967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3625.899621 B = 6382.087249 C = 9434.492265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.150 4.150 3 C -0.026 4.026 4 N -0.383 5.383 5 H 0.447 0.553 6 N -0.237 5.237 7 C -0.011 4.011 8 C 0.614 3.386 9 O -0.545 6.545 10 N -0.601 5.601 11 C 0.120 3.880 12 C -0.076 4.076 13 H 0.093 0.907 14 C -0.048 4.048 15 C -0.114 4.114 16 C -0.121 4.121 17 C -0.131 4.131 18 C -0.119 4.119 19 C -0.106 4.106 20 C 0.182 3.818 21 H 0.068 0.932 22 N -0.708 5.708 23 C -0.241 4.241 24 H 0.072 0.928 25 C -0.008 4.008 26 N -0.929 5.929 27 Si 0.905 3.095 28 H -0.280 1.280 29 H -0.292 1.292 30 H -0.291 1.291 31 C 0.084 3.916 32 H 0.065 0.935 33 H 0.059 0.941 34 H 0.082 0.918 35 H 0.181 0.819 36 H 0.077 0.923 37 H 0.071 0.929 38 H 0.119 0.881 39 H 0.117 0.883 40 H 0.115 0.885 41 H 0.117 0.883 42 H 0.121 0.879 43 H 0.387 0.613 44 H 0.255 0.745 45 H 0.080 0.920 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.047 4.052 -5.802 14.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.160 4.160 3 C -0.170 4.170 4 N -0.097 5.097 5 H 0.291 0.709 6 N -0.074 5.074 7 C -0.172 4.172 8 C 0.401 3.599 9 O -0.422 6.422 10 N -0.333 5.333 11 C -0.003 4.003 12 C -0.096 4.096 13 H 0.111 0.889 14 C -0.048 4.048 15 C -0.132 4.132 16 C -0.139 4.139 17 C -0.149 4.149 18 C -0.137 4.137 19 C -0.124 4.124 20 C 0.069 3.931 21 H 0.086 0.914 22 N -0.347 5.347 23 C -0.372 4.372 24 H 0.090 0.910 25 C -0.204 4.204 26 N -0.577 5.577 27 Si 0.736 3.264 28 H -0.205 1.205 29 H -0.219 1.219 30 H -0.218 1.218 31 C -0.042 4.042 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.100 0.900 35 H 0.198 0.802 36 H 0.096 0.904 37 H 0.089 0.911 38 H 0.137 0.863 39 H 0.135 0.865 40 H 0.133 0.867 41 H 0.135 0.865 42 H 0.139 0.861 43 H 0.221 0.779 44 H 0.065 0.935 45 H 0.098 0.902 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -12.458 3.618 -5.890 14.247 hybrid contribution 0.917 0.979 0.055 1.343 sum -11.541 4.597 -5.835 13.725 Atomic orbital electron populations 1.20148 0.88241 1.02840 1.02250 1.20361 0.97457 0.90466 1.07709 1.22664 0.84379 1.00376 1.09611 1.43360 1.08509 1.04710 1.53118 0.70893 1.73881 1.22844 0.93285 1.17352 1.21813 0.89478 0.94915 1.10969 1.16516 0.84420 0.82226 0.76740 1.90730 1.16492 1.82651 1.52335 1.48333 1.08063 1.05884 1.71025 1.22335 0.97692 0.79260 1.00964 1.21756 0.95360 0.91346 1.01106 0.88921 1.19479 0.98116 0.93936 0.93292 1.20963 1.00529 0.96425 0.95313 1.21033 1.00630 0.93043 0.99164 1.21041 1.01532 0.98898 0.93411 1.21067 1.00404 0.96474 0.95793 1.21045 0.99364 0.92445 0.99524 1.21315 0.86594 0.89829 0.95324 0.91407 1.42304 1.02105 1.81291 1.09019 1.19260 0.84849 1.38669 0.94418 0.91016 1.24714 0.97879 1.02170 0.95641 1.69664 1.29164 1.54755 1.04111 0.86160 0.84601 0.77629 0.78034 1.20509 1.21914 1.21836 1.23359 0.76805 1.01346 1.02692 0.91602 0.92215 0.89966 0.80171 0.90436 0.91124 0.86268 0.86541 0.86701 0.86471 0.86110 0.77893 0.93504 0.90154 0.91758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.87 9.93 36.00 0.36 -0.51 16 2 C -0.15 -1.96 6.25 -104.41 -0.65 -2.62 16 3 C -0.03 -0.26 11.97 -17.17 -0.21 -0.47 16 4 N -0.38 -4.24 6.83 30.47 0.21 -4.03 16 5 H 0.45 3.34 8.96 -190.44 -1.71 1.63 16 6 N -0.24 -3.65 9.76 33.42 0.33 -3.32 16 7 C -0.01 -0.17 6.98 -82.76 -0.58 -0.75 16 8 C 0.61 10.90 7.86 -12.39 -0.10 10.80 16 9 O -0.55 -10.36 15.37 5.31 0.08 -10.27 16 10 N -0.60 -10.30 3.33 -171.37 -0.57 -10.87 16 11 C 0.12 1.87 6.33 -2.26 -0.01 1.85 16 12 C -0.08 -1.25 2.90 -89.36 -0.26 -1.51 16 13 H 0.09 1.59 7.83 -51.93 -0.41 1.18 16 14 C -0.05 -0.76 5.01 -104.62 -0.52 -1.28 16 15 C -0.11 -1.68 8.32 -39.58 -0.33 -2.01 16 16 C -0.12 -1.62 10.05 -39.58 -0.40 -2.02 16 17 C -0.13 -1.72 10.05 -39.58 -0.40 -2.12 16 18 C -0.12 -1.66 10.05 -39.59 -0.40 -2.06 16 19 C -0.11 -1.63 9.69 -39.58 -0.38 -2.02 16 20 C 0.18 3.48 3.00 -66.09 -0.20 3.29 16 21 H 0.07 1.33 7.19 -51.93 -0.37 0.95 16 22 N -0.71 -16.83 5.16 -51.65 -0.27 -17.10 16 23 C -0.24 -6.40 9.97 -15.06 -0.15 -6.55 16 24 H 0.07 1.87 7.83 -52.48 -0.41 1.45 16 25 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 26 N -0.93 -27.20 13.06 55.49 0.72 -26.48 16 27 Si 0.90 21.87 29.55 -169.99 -5.02 16.84 16 28 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 29 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 30 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 31 C 0.08 1.54 5.29 -3.07 -0.02 1.52 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.08 1.08 6.72 -51.93 -0.35 0.73 16 35 H 0.18 1.02 8.06 -52.48 -0.42 0.59 16 36 H 0.08 1.19 8.04 -51.93 -0.42 0.77 16 37 H 0.07 1.02 6.66 -51.93 -0.35 0.68 16 38 H 0.12 1.62 7.01 -52.49 -0.37 1.25 16 39 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 40 H 0.11 1.22 8.06 -52.49 -0.42 0.80 16 41 H 0.12 1.38 8.06 -52.49 -0.42 0.95 16 42 H 0.12 1.78 7.99 -52.48 -0.42 1.36 16 43 H 0.39 9.86 7.74 -40.82 -0.32 9.55 16 44 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 45 H 0.08 1.65 7.54 -51.93 -0.39 1.26 16 46 H 0.06 1.19 7.78 -51.93 -0.40 0.79 16 LS Contribution 381.60 15.07 5.75 5.75 Total: -1.00 -33.03 381.60 -10.69 -43.72 By element: Atomic # 1 Polarization: 20.10 SS G_CDS: -7.58 Total: 12.52 kcal Atomic # 6 Polarization: -2.42 SS G_CDS: -4.34 Total: -6.76 kcal Atomic # 7 Polarization: -62.22 SS G_CDS: 0.42 Total: -61.80 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: 0.08 Total: -10.27 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.03 -10.69 -43.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081115726.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.258 kcal (2) G-P(sol) polarization free energy of solvation -33.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds