Wall clock time and date at job start Sat Apr 11 2020 06:04:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.33316 * 126.10922 * 2 1 4 4 C 1.30854 * 109.68551 * 180.27632 * 3 2 1 5 5 N 1.34493 * 109.16282 * 359.76231 * 4 3 2 6 6 H 0.97008 * 126.47209 * 179.97438 * 5 4 3 7 7 C 1.36663 * 126.10426 * 179.87706 * 2 1 3 8 8 C 1.46761 * 126.84788 * 0.02562 * 7 2 1 9 9 O 1.21682 * 120.00113 * 353.42645 * 8 7 2 10 10 N 1.34773 * 120.00213 * 173.42460 * 8 7 2 11 11 C 1.47027 * 125.64988 * 174.44380 * 10 8 7 12 12 C 1.54321 * 107.27169 * 178.96442 * 11 10 8 13 13 H 1.08996 * 110.87097 * 96.24632 * 12 11 10 14 14 C 1.50704 * 110.71945 * 219.44865 * 12 11 10 15 15 C 1.38229 * 120.00226 * 53.24957 * 14 12 11 16 16 C 1.38230 * 120.00082 * 179.81027 * 15 14 12 17 17 C 1.38240 * 120.00030 * 0.41857 * 16 15 14 18 18 C 1.38234 * 119.99582 * 359.81323 * 17 16 15 19 19 C 1.38226 * 120.00214 * 359.97438 * 18 17 16 20 20 C 1.55162 * 102.94363 * 337.80947 * 12 11 10 21 21 H 1.09004 * 110.99975 * 277.39106 * 20 12 11 22 22 N 1.46492 * 111.00216 * 153.57743 * 20 12 11 23 23 C 1.36944 * 120.00059 * 155.00511 * 22 20 12 24 24 H 1.07995 * 119.99409 * 359.97438 * 23 22 20 25 25 C 1.38811 * 120.00016 * 179.97438 * 23 22 20 26 26 N 1.31623 * 120.00113 * 359.72101 * 25 23 22 27 27 Si 1.86803 * 119.99663 * 179.97438 * 25 23 22 28 28 H 1.48506 * 109.47033 * 60.00162 * 27 25 23 29 29 H 1.48496 * 109.46715 * 179.97438 * 27 25 23 30 30 H 1.48491 * 109.47191 * 300.00005 * 27 25 23 31 31 C 1.47423 * 125.65131 * 354.47599 * 10 8 7 32 32 H 1.08998 * 109.46858 * 270.12455 * 1 2 3 33 33 H 1.08999 * 109.47325 * 30.12036 * 1 2 3 34 34 H 1.08997 * 109.47003 * 150.12552 * 1 2 3 35 35 H 1.08004 * 125.41797 * 179.78778 * 4 3 2 36 36 H 1.09004 * 109.87843 * 59.54712 * 11 10 8 37 37 H 1.09001 * 110.01351 * 298.45556 * 11 10 8 38 38 H 1.07999 * 120.00175 * 359.97438 * 15 14 12 39 39 H 1.07998 * 120.00236 * 180.20601 * 16 15 14 40 40 H 1.07996 * 119.99882 * 179.78698 * 17 16 15 41 41 H 1.08007 * 119.99667 * 179.97438 * 18 17 16 42 42 H 1.08000 * 120.00310 * 179.97438 * 19 18 17 43 43 H 0.97003 * 120.00035 * 334.99602 * 22 20 12 44 44 H 0.97000 * 119.99613 * 180.02562 * 26 25 23 45 45 H 1.08996 * 110.36978 * 85.26005 * 31 10 8 46 46 H 1.09000 * 110.36458 * 322.94624 * 31 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2927 1.0771 0.0000 4 6 3.5478 0.7071 -0.0059 5 7 3.6121 -0.6363 -0.0047 6 1 4.4189 -1.1750 -0.0086 7 6 2.3123 -1.1042 0.0024 8 6 1.8821 -2.5073 0.0049 9 8 0.7028 -2.7818 0.1256 10 7 2.7931 -3.4918 -0.1266 11 6 2.5183 -4.9326 -0.0260 12 6 3.8510 -5.6714 -0.2700 13 1 4.3339 -5.9232 0.6741 14 6 3.6301 -6.9094 -1.1005 15 6 2.9650 -6.8213 -2.3091 16 6 2.7658 -7.9563 -3.0726 17 6 3.2241 -9.1807 -2.6235 18 6 3.8850 -9.2695 -1.4126 19 6 4.0880 -8.1339 -0.6512 20 6 4.6889 -4.6269 -1.0539 21 1 4.4394 -4.6427 -2.1149 22 7 6.1232 -4.8454 -0.8512 23 6 7.0209 -4.4165 -1.7923 24 1 6.6713 -3.9176 -2.6840 25 6 8.3800 -4.6231 -1.6000 26 7 8.8063 -5.2263 -0.5105 27 14 9.6044 -4.0387 -2.8840 28 1 9.4848 -2.5676 -3.0486 29 1 10.9819 -4.3768 -2.4444 30 1 9.3197 -4.7065 -4.1794 31 6 4.2303 -3.3023 -0.3945 32 1 -0.3633 0.0022 1.0277 33 1 -0.3634 0.8889 -0.5157 34 1 -0.3633 -0.8911 -0.5119 35 1 4.3971 1.3744 -0.0106 36 1 1.7888 -5.2245 -0.7816 37 1 2.1385 -5.1715 0.9674 38 1 2.6033 -5.8654 -2.6581 39 1 2.2491 -7.8870 -4.0185 40 1 3.0654 -10.0679 -3.2185 41 1 4.2427 -10.2262 -1.0616 42 1 4.6040 -8.2032 0.2951 43 1 6.4371 -5.2938 -0.0503 44 1 9.7561 -5.3703 -0.3761 45 1 4.7711 -3.1351 0.5370 46 1 4.3819 -2.4663 -1.0773 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001081236056.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:44 Heat of formation + Delta-G solvation = 70.143270 kcal Electronic energy + Delta-G solvation = -29508.000341 eV Core-core repulsion = 25591.848299 eV Total energy + Delta-G solvation = -3916.152042 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.26426 -40.08014 -38.81187 -37.29432 -34.36224 -33.47870 -32.50111 -31.17532 -31.03189 -30.70292 -28.69117 -27.72244 -27.07412 -24.47291 -23.62280 -22.67964 -22.28388 -21.18689 -21.11558 -19.81703 -19.48919 -17.68122 -17.58545 -16.75431 -16.33998 -16.06782 -15.54487 -15.29620 -14.89257 -14.65368 -14.53510 -14.39801 -13.81377 -13.49121 -13.31805 -13.17697 -13.01320 -13.00743 -12.84789 -12.75892 -12.63679 -12.25524 -12.08325 -11.83036 -11.65573 -11.08784 -11.01366 -10.88185 -10.73688 -10.50099 -10.45148 -10.28952 -10.02181 -9.95764 -9.80659 -9.22947 -8.78717 -8.67897 -8.46627 -8.33678 -7.27181 -6.00891 -3.33057 1.31586 1.55536 1.62449 2.80793 2.82961 3.12009 3.28544 3.34209 3.35027 3.35574 3.95708 4.33874 4.41446 4.59629 4.77648 4.82594 4.94096 5.10813 5.13306 5.17003 5.17829 5.27972 5.33933 5.41466 5.42934 5.52637 5.67476 5.71865 5.75571 5.80910 5.83056 5.88609 5.93961 5.99409 6.03723 6.06647 6.22159 6.25396 6.31091 6.52383 6.57684 6.67084 6.70216 6.87038 7.18285 7.20891 7.46735 7.49955 7.87647 8.13761 8.16468 9.28204 9.78181 10.13614 11.20297 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.007728 B = 0.004441 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3622.235558 B = 6303.949749 C = 9266.076361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.090 3.910 3 N -0.503 5.503 4 C 0.215 3.785 5 N -0.553 5.553 6 H 0.430 0.570 7 C -0.085 4.085 8 C 0.607 3.393 9 O -0.533 6.533 10 N -0.614 5.614 11 C 0.123 3.877 12 C -0.075 4.075 13 H 0.094 0.906 14 C -0.052 4.052 15 C -0.113 4.113 16 C -0.120 4.120 17 C -0.129 4.129 18 C -0.119 4.119 19 C -0.105 4.105 20 C 0.188 3.812 21 H 0.074 0.926 22 N -0.705 5.705 23 C -0.256 4.256 24 H 0.071 0.929 25 C -0.001 4.001 26 N -0.926 5.926 27 Si 0.907 3.093 28 H -0.284 1.284 29 H -0.289 1.289 30 H -0.284 1.284 31 C 0.057 3.943 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.085 0.915 35 H 0.215 0.785 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.118 0.882 39 H 0.117 0.883 40 H 0.116 0.884 41 H 0.118 0.882 42 H 0.121 0.879 43 H 0.388 0.612 44 H 0.259 0.741 45 H 0.073 0.927 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.358 0.805 0.584 11.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.045 4.045 3 N -0.223 5.223 4 C -0.069 4.069 5 N -0.162 5.162 6 H 0.274 0.726 7 C -0.202 4.202 8 C 0.396 3.604 9 O -0.410 6.410 10 N -0.347 5.347 11 C 0.000 4.000 12 C -0.095 4.095 13 H 0.112 0.888 14 C -0.052 4.052 15 C -0.131 4.131 16 C -0.138 4.138 17 C -0.147 4.147 18 C -0.137 4.137 19 C -0.123 4.123 20 C 0.075 3.925 21 H 0.092 0.908 22 N -0.343 5.343 23 C -0.386 4.386 24 H 0.089 0.911 25 C -0.199 4.199 26 N -0.572 5.572 27 Si 0.737 3.263 28 H -0.211 1.211 29 H -0.215 1.215 30 H -0.210 1.210 31 C -0.070 4.070 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.104 0.896 35 H 0.231 0.769 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.136 0.864 39 H 0.135 0.865 40 H 0.134 0.866 41 H 0.136 0.864 42 H 0.139 0.861 43 H 0.223 0.777 44 H 0.069 0.931 45 H 0.091 0.909 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -12.160 1.529 0.524 12.267 hybrid contribution 2.026 -0.792 -0.426 2.217 sum -10.134 0.738 0.098 10.161 Atomic orbital electron populations 1.20225 0.86653 1.03278 1.02871 1.21029 0.96790 0.86662 1.00026 1.70115 1.00492 1.30471 1.21246 1.25151 0.97337 0.82491 1.01938 1.44060 1.08678 1.08970 1.54487 0.72581 1.20855 0.84449 0.94829 1.20026 1.16493 0.84771 0.82149 0.76943 1.90795 1.15932 1.82777 1.51486 1.48365 1.09328 1.06474 1.70556 1.21986 0.97011 0.78910 1.02088 1.21577 0.95243 0.93229 0.99488 0.88768 1.19483 0.97113 0.93748 0.94894 1.20952 0.99311 0.98399 0.94452 1.21044 1.00462 0.92798 0.99502 1.21062 0.99505 0.97519 0.96595 1.21076 0.99207 0.98351 0.95094 1.21033 0.99145 0.92011 1.00139 1.21322 0.85802 0.88446 0.96947 0.90798 1.42266 0.98277 1.69194 1.24612 1.19154 0.87184 1.32361 0.99935 0.91067 1.24750 0.96992 1.00522 0.97589 1.69640 1.14529 1.46543 1.26471 0.86287 0.80620 0.78409 0.80956 1.21101 1.21515 1.21030 1.23765 0.79223 1.03373 1.00606 0.90880 0.91255 0.89634 0.76892 0.90786 0.91283 0.86369 0.86474 0.86602 0.86391 0.86082 0.77723 0.93123 0.90919 0.91325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.92 9.82 36.01 0.35 -0.57 16 2 C 0.09 1.33 7.14 -82.52 -0.59 0.74 16 3 N -0.50 -7.18 11.20 -10.64 -0.12 -7.30 16 4 C 0.22 2.50 13.01 -90.58 -1.18 1.32 16 5 N -0.55 -6.92 5.43 -10.79 -0.06 -6.98 16 6 H 0.43 4.96 5.53 -40.82 -0.23 4.74 16 7 C -0.09 -1.27 6.82 -82.15 -0.56 -1.83 16 8 C 0.61 9.69 7.81 -12.82 -0.10 9.59 16 9 O -0.53 -9.46 15.24 5.21 0.08 -9.38 16 10 N -0.61 -9.07 3.33 -172.03 -0.57 -9.64 16 11 C 0.12 1.72 6.34 -3.06 -0.02 1.70 16 12 C -0.08 -1.11 2.82 -89.93 -0.25 -1.36 16 13 H 0.09 1.38 7.81 -51.93 -0.41 0.98 16 14 C -0.05 -0.77 4.95 -104.62 -0.52 -1.29 16 15 C -0.11 -1.60 8.11 -39.59 -0.32 -1.92 16 16 C -0.12 -1.56 10.05 -39.58 -0.40 -1.96 16 17 C -0.13 -1.62 10.05 -39.58 -0.40 -2.02 16 18 C -0.12 -1.57 10.05 -39.59 -0.40 -1.97 16 19 C -0.11 -1.52 9.68 -39.59 -0.38 -1.90 16 20 C 0.19 3.20 3.11 -65.79 -0.20 2.99 16 21 H 0.07 1.33 7.17 -51.93 -0.37 0.96 16 22 N -0.70 -15.10 5.24 -51.35 -0.27 -15.37 16 23 C -0.26 -6.27 9.96 -15.06 -0.15 -6.42 16 24 H 0.07 1.71 7.83 -52.49 -0.41 1.30 16 25 C 0.00 -0.03 5.50 -17.43 -0.10 -0.13 16 26 N -0.93 -25.42 13.06 55.49 0.72 -24.70 16 27 Si 0.91 20.67 29.55 -169.99 -5.02 15.65 16 28 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 29 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 30 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 31 C 0.06 0.85 4.97 -2.53 -0.01 0.84 16 32 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.08 1.15 6.64 -51.93 -0.34 0.80 16 35 H 0.21 1.54 8.06 -52.48 -0.42 1.12 16 36 H 0.07 1.04 6.64 -51.93 -0.35 0.69 16 37 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.12 1.60 7.29 -52.49 -0.38 1.22 16 39 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 40 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 41 H 0.12 1.30 8.06 -52.48 -0.42 0.87 16 42 H 0.12 1.63 7.98 -52.49 -0.42 1.21 16 43 H 0.39 8.95 7.76 -40.82 -0.32 8.63 16 44 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 45 H 0.07 1.09 7.89 -51.93 -0.41 0.68 16 46 H 0.07 1.00 6.19 -51.93 -0.32 0.68 16 LS Contribution 378.25 15.07 5.70 5.70 Total: -1.00 -30.31 378.25 -10.81 -41.13 By element: Atomic # 1 Polarization: 21.14 SS G_CDS: -6.05 Total: 15.09 kcal Atomic # 6 Polarization: 1.04 SS G_CDS: -5.23 Total: -4.18 kcal Atomic # 7 Polarization: -63.70 SS G_CDS: -0.29 Total: -64.00 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: 0.08 Total: -9.38 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -30.31 -10.81 -41.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081236056.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.269 kcal (2) G-P(sol) polarization free energy of solvation -30.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds