Wall clock time and date at job start Sat Apr 11 2020 06:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35448 * 126.38946 * 2 1 4 4 N 1.33182 * 108.62051 * 180.02562 * 3 2 1 5 5 C 1.32650 * 109.12884 * 0.02562 * 4 3 2 6 6 C 1.40647 * 132.16017 * 180.02562 * 5 4 3 7 7 C 1.38434 * 119.09646 * 179.97438 * 6 5 4 8 8 C 1.47652 * 120.37415 * 180.02562 * 7 6 5 9 9 O 1.21587 * 119.99803 * 188.09481 * 8 7 6 10 10 N 1.34772 * 120.00181 * 8.09851 * 8 7 6 11 11 C 1.47808 * 135.00981 * 356.93357 * 10 8 7 12 12 C 1.54653 * 85.79358 * 153.81278 * 11 10 8 13 13 H 1.08997 * 114.43928 * 139.84383 * 12 11 10 14 14 C 1.53016 * 110.83790 * 270.23196 * 12 11 10 15 15 C 1.53098 * 109.44755 * 143.89074 * 14 12 11 16 16 N 1.46618 * 108.00773 * 301.01571 * 15 14 12 17 17 C 1.36932 * 119.89158 * 237.35121 * 16 15 14 18 18 H 1.07997 * 120.00075 * 34.54439 * 17 16 15 19 19 C 1.38813 * 119.99784 * 214.53969 * 17 16 15 20 20 N 1.31618 * 120.00413 * 355.52330 * 19 17 16 21 21 Si 1.86802 * 119.99770 * 175.51864 * 19 17 16 22 22 H 1.48504 * 109.46789 * 60.00650 * 21 19 17 23 23 H 1.48500 * 109.46757 * 179.97438 * 21 19 17 24 24 H 1.48493 * 109.47618 * 300.00255 * 21 19 17 25 25 C 1.45067 * 120.49769 * 56.72475 * 16 15 14 26 26 C 1.46820 * 135.01474 * 176.93571 * 10 8 7 27 27 H 1.09006 * 111.55952 * 94.47812 * 26 10 8 28 28 C 1.41779 * 119.25629 * 0.27124 * 7 6 5 29 29 C 1.34545 * 120.14084 * 359.47029 * 28 7 6 30 30 N 1.36437 * 126.38812 * 180.02562 * 2 1 3 31 31 H 1.08997 * 109.47212 * 89.97199 * 1 2 3 32 32 H 1.08996 * 109.46804 * 209.97627 * 1 2 3 33 33 H 1.08999 * 109.46464 * 329.97406 * 1 2 3 34 34 H 1.07996 * 125.69198 * 359.97438 * 3 2 1 35 35 H 1.08007 * 120.45314 * 359.97438 * 6 5 4 36 36 H 1.08998 * 113.82051 * 39.59568 * 11 10 8 37 37 H 1.08998 * 113.93285 * 268.04154 * 11 10 8 38 38 H 1.09000 * 109.47212 * 263.88213 * 14 12 11 39 39 H 1.09001 * 109.47812 * 23.89337 * 14 12 11 40 40 H 1.09001 * 109.75206 * 60.64674 * 15 14 12 41 41 H 1.09004 * 109.75002 * 181.33827 * 15 14 12 42 42 H 0.96992 * 120.00364 * 179.97438 * 20 19 17 43 43 H 1.09002 * 108.75234 * 200.67765 * 25 16 15 44 44 H 1.08996 * 108.30408 * 82.86967 * 25 16 15 45 45 H 1.07993 * 119.92792 * 179.72495 * 28 7 6 46 46 H 1.08005 * 119.51772 * 180.29859 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3106 1.0904 0.0000 4 7 3.5789 0.6839 -0.0006 5 6 3.6104 -0.6422 -0.0015 6 6 4.6751 -1.5612 -0.0019 7 6 4.3942 -2.9168 -0.0024 8 6 5.4902 -3.9063 -0.0022 9 8 5.2428 -5.0874 -0.1509 10 7 6.7646 -3.5003 0.1628 11 6 7.4339 -2.1905 0.3091 12 6 8.5312 -2.9649 1.0759 13 1 9.5488 -2.6438 0.8536 14 6 8.2134 -3.0211 2.5716 15 6 8.6562 -4.3735 3.1363 16 7 7.9418 -5.4254 2.4063 17 6 7.1651 -6.3230 3.0890 18 1 6.6221 -6.0083 3.9680 19 6 7.0757 -7.6372 2.6513 20 7 7.6655 -7.9998 1.5320 21 14 6.1182 -8.8915 3.6512 22 1 4.7035 -8.4553 3.7684 23 1 6.1741 -10.2116 2.9734 24 1 6.7152 -9.0045 5.0061 25 6 8.0400 -5.5157 0.9618 26 6 8.0638 -4.1755 0.2717 27 1 8.5665 -4.2350 -0.6937 28 6 3.0425 -3.3444 -0.0083 29 6 2.0474 -2.4388 -0.0026 30 7 2.3165 -1.0983 -0.0005 31 1 -0.3633 0.0005 -1.0276 32 1 -0.3633 -0.8902 0.5135 33 1 -0.3632 0.8898 0.5142 34 1 1.9783 2.1179 -0.0004 35 1 5.6978 -1.2141 -0.0018 36 1 6.8828 -1.4811 0.9263 37 1 7.7750 -1.7606 -0.6327 38 1 8.7449 -2.2208 3.0864 39 1 7.1404 -2.8990 2.7201 40 1 9.7308 -4.4954 3.0005 41 1 8.4105 -4.4281 4.1969 42 1 7.6032 -8.9182 1.2263 43 1 7.1901 -6.0867 0.5878 44 1 8.9553 -6.0531 0.7138 45 1 2.8111 -4.3992 -0.0132 46 1 1.0213 -2.7757 -0.0023 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084344145.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:47 Heat of formation + Delta-G solvation = 135.286172 kcal Electronic energy + Delta-G solvation = -30162.637847 eV Core-core repulsion = 26249.310614 eV Total energy + Delta-G solvation = -3913.327234 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.98185 -40.56892 -38.21930 -36.69352 -35.27011 -34.11270 -32.19170 -31.56927 -30.34877 -30.19419 -28.88572 -27.17235 -26.66168 -24.26262 -23.78972 -23.56156 -22.38603 -21.43916 -20.95286 -19.90773 -18.03247 -17.61719 -17.14995 -16.80894 -16.22887 -16.04254 -15.74713 -15.52987 -14.75148 -14.37991 -14.19031 -13.82109 -13.76459 -13.58635 -13.53932 -13.29383 -13.27407 -12.97922 -12.64792 -12.61378 -12.36446 -12.04359 -11.88655 -11.80830 -11.45953 -11.00669 -10.83325 -10.77338 -10.62887 -10.47262 -10.27050 -10.22731 -9.95824 -9.81714 -9.64701 -9.02577 -8.96309 -8.31552 -8.17131 -7.85820 -6.45763 -5.68576 -3.20161 0.42157 0.99623 2.39517 2.59743 3.05155 3.12423 3.44755 3.49069 3.49920 3.79538 4.00342 4.26160 4.42783 4.55680 4.57042 4.66941 4.76446 4.88469 5.01400 5.18154 5.19859 5.26763 5.32430 5.40243 5.45083 5.49216 5.50539 5.54348 5.63334 5.73904 5.88731 5.89474 5.95243 6.13789 6.15596 6.28156 6.35457 6.40508 6.44135 6.55121 6.61242 6.81095 6.87700 7.01934 7.54623 7.67601 7.84190 7.95099 8.19904 8.61771 8.65155 9.38166 9.97714 10.49722 11.38491 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013860 B = 0.003591 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.702335 B = 7794.778231 C = 8943.752311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.071 4.071 3 C 0.032 3.968 4 N -0.484 5.484 5 C 0.212 3.788 6 C -0.057 4.057 7 C -0.095 4.095 8 C 0.579 3.421 9 O -0.508 6.508 10 N -0.623 5.623 11 C 0.080 3.920 12 C -0.107 4.107 13 H 0.089 0.911 14 C -0.119 4.119 15 C 0.148 3.852 16 N -0.585 5.585 17 C -0.260 4.260 18 H 0.058 0.942 19 C 0.018 3.982 20 N -0.900 5.900 21 Si 0.901 3.099 22 H -0.284 1.284 23 H -0.290 1.290 24 H -0.283 1.283 25 C 0.165 3.835 26 C 0.125 3.875 27 H 0.076 0.924 28 C -0.088 4.088 29 C 0.039 3.961 30 N -0.351 5.351 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.084 0.916 34 H 0.180 0.820 35 H 0.168 0.832 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.055 0.945 39 H 0.059 0.941 40 H 0.021 0.979 41 H 0.056 0.944 42 H 0.254 0.746 43 H 0.107 0.893 44 H 0.032 0.968 45 H 0.164 0.836 46 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.732 17.302 -4.819 19.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.185 4.185 3 C -0.121 4.121 4 N -0.204 5.204 5 C -0.029 4.029 6 C -0.077 4.077 7 C -0.104 4.104 8 C 0.367 3.633 9 O -0.384 6.384 10 N -0.358 5.358 11 C -0.043 4.043 12 C -0.126 4.126 13 H 0.107 0.893 14 C -0.158 4.158 15 C 0.021 3.979 16 N -0.308 5.308 17 C -0.389 4.389 18 H 0.076 0.924 19 C -0.181 4.181 20 N -0.543 5.543 21 Si 0.731 3.269 22 H -0.210 1.210 23 H -0.216 1.216 24 H -0.210 1.210 25 C 0.039 3.961 26 C 0.022 3.978 27 H 0.093 0.907 28 C -0.109 4.109 29 C -0.082 4.082 30 N -0.023 5.023 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.103 0.897 34 H 0.197 0.803 35 H 0.185 0.815 36 H 0.102 0.898 37 H 0.103 0.897 38 H 0.074 0.926 39 H 0.078 0.922 40 H 0.039 0.961 41 H 0.075 0.925 42 H 0.064 0.936 43 H 0.125 0.875 44 H 0.049 0.951 45 H 0.182 0.818 46 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -8.429 16.874 -5.026 19.520 hybrid contribution -1.353 -1.034 0.347 1.737 sum -9.782 15.840 -4.679 19.196 Atomic orbital electron populations 1.20174 0.86530 1.03505 1.02716 1.21298 0.94836 0.85328 1.17076 1.22314 0.87938 0.98569 1.03318 1.70649 1.21784 1.06080 1.21870 1.20732 0.83700 0.90869 1.07606 1.21453 0.98692 0.90106 0.97474 1.20265 0.94664 0.92887 1.02621 1.17321 0.80764 0.87462 0.77716 1.90872 1.82427 1.16689 1.48390 1.49741 1.05022 1.09732 1.71330 1.23863 0.92732 0.87953 0.99739 1.22867 0.97638 0.95677 0.96461 0.89253 1.21875 1.01236 0.99838 0.92860 1.20765 0.94381 0.87229 0.95476 1.43285 1.53683 1.32892 1.00918 1.18978 1.21811 0.88451 1.09683 0.92398 1.25263 0.98554 0.97106 0.97191 1.69948 1.46146 1.17262 1.20910 0.86403 0.79719 0.80978 0.79810 1.21040 1.21589 1.20955 1.20129 1.03227 0.89163 0.83617 1.22858 0.79252 0.97729 0.97980 0.90659 1.20876 0.90168 1.01041 0.98829 1.21426 1.01293 0.79997 1.05470 1.42726 1.08882 1.05759 1.44916 0.90956 0.91683 0.89737 0.80265 0.81510 0.89826 0.89703 0.92594 0.92176 0.96093 0.92526 0.93595 0.87481 0.95059 0.81808 0.81650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.47 10.30 36.01 0.37 -0.09 16 2 C -0.07 -0.76 7.02 -81.54 -0.57 -1.33 16 3 C 0.03 0.37 11.75 -17.96 -0.21 0.16 16 4 N -0.48 -7.02 11.31 -12.80 -0.14 -7.17 16 5 C 0.21 3.10 7.79 -155.96 -1.22 1.88 16 6 C -0.06 -0.82 9.25 -38.60 -0.36 -1.18 16 7 C -0.10 -1.52 5.90 -104.63 -0.62 -2.14 16 8 C 0.58 11.38 7.89 -12.42 -0.10 11.28 16 9 O -0.51 -12.25 15.53 5.29 0.08 -12.17 16 10 N -0.62 -11.11 3.33 -175.17 -0.58 -11.69 16 11 C 0.08 1.05 5.99 -3.00 -0.02 1.03 16 12 C -0.11 -1.60 4.39 -89.97 -0.40 -2.00 16 13 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 14 C -0.12 -1.96 5.66 -26.67 -0.15 -2.11 16 15 C 0.15 3.03 6.48 -3.93 -0.03 3.01 16 16 N -0.59 -14.79 3.01 -175.56 -0.53 -15.32 16 17 C -0.26 -7.34 9.42 -15.06 -0.14 -7.48 16 18 H 0.06 1.63 7.83 -52.49 -0.41 1.22 16 19 C 0.02 0.53 5.29 -17.43 -0.09 0.44 16 20 N -0.90 -26.83 10.65 55.49 0.59 -26.24 16 21 Si 0.90 22.59 29.56 -169.99 -5.02 17.57 16 22 H -0.28 -7.12 7.11 56.52 0.40 -6.71 16 23 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 24 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 25 C 0.16 4.04 4.54 -5.93 -0.03 4.01 16 26 C 0.13 2.35 4.26 -69.59 -0.30 2.05 16 27 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 28 C -0.09 -1.23 9.54 -39.54 -0.38 -1.61 16 29 C 0.04 0.45 10.80 -16.68 -0.18 0.27 16 30 N -0.35 -4.50 2.94 -58.54 -0.17 -4.67 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.39 8.12 -51.93 -0.42 -0.03 16 33 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.18 1.41 8.06 -52.49 -0.42 0.98 16 35 H 0.17 2.17 3.86 -52.48 -0.20 1.96 16 36 H 0.08 1.02 6.04 -51.93 -0.31 0.71 16 37 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.06 1.10 7.69 -51.93 -0.40 0.70 16 40 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.06 1.15 7.91 -51.93 -0.41 0.74 16 42 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 43 H 0.11 3.09 4.97 -51.93 -0.26 2.83 16 44 H 0.03 0.83 7.87 -51.93 -0.41 0.42 16 45 H 0.16 2.25 7.72 -52.49 -0.41 1.85 16 46 H 0.17 1.30 8.04 -52.48 -0.42 0.88 16 LS Contribution 367.33 15.07 5.54 5.54 Total: -1.00 -35.64 367.33 -10.82 -46.46 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -6.17 Total: 1.49 kcal Atomic # 6 Polarization: 10.60 SS G_CDS: -4.41 Total: 6.19 kcal Atomic # 7 Polarization: -64.25 SS G_CDS: -0.84 Total: -65.08 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: 0.08 Total: -12.17 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -35.64 -10.82 -46.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084344145.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.749 kcal (2) G-P(sol) polarization free energy of solvation -35.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 146.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds