Wall clock time and date at job start Sat Apr 11 2020 06:04:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.40173 * 120.19324 * 2 1 4 4 C 1.35263 * 120.12201 * 180.02562 * 3 2 1 5 5 N 1.35949 * 120.63954 * 0.02562 * 4 3 2 6 6 C 1.38297 * 132.39635 * 179.97438 * 5 4 3 7 7 C 1.41820 * 126.78515 * 359.97438 * 6 5 4 8 8 O 1.21775 * 120.00054 * 355.57948 * 7 6 5 9 9 N 1.34774 * 119.99495 * 175.58322 * 7 6 5 10 10 C 1.47284 * 136.54823 * 5.28570 * 9 7 6 11 11 C 1.54084 * 87.60725 * 151.36604 * 10 9 7 12 12 H 1.09005 * 115.04500 * 142.50129 * 11 10 9 13 13 C 1.53064 * 111.39667 * 273.97673 * 11 10 9 14 14 C 1.53145 * 109.21558 * 142.39538 * 13 11 10 15 15 N 1.46534 * 108.25030 * 301.58983 * 14 13 11 16 16 C 1.36936 * 119.73757 * 236.39643 * 15 14 13 17 17 H 1.08000 * 119.99990 * 146.96977 * 16 15 14 18 18 C 1.38815 * 120.00132 * 326.97267 * 16 15 14 19 19 N 1.31617 * 119.99906 * 166.16002 * 18 16 15 20 20 Si 1.86797 * 119.99679 * 346.15406 * 18 16 15 21 21 H 1.48498 * 109.47194 * 91.62507 * 20 18 16 22 22 H 1.48510 * 109.47030 * 211.61898 * 20 18 16 23 23 H 1.48503 * 109.47552 * 331.61781 * 20 18 16 24 24 C 1.45697 * 120.52590 * 56.42436 * 15 14 13 25 25 C 1.46472 * 136.53696 * 184.92012 * 9 7 6 26 26 H 1.08998 * 111.44395 * 96.38288 * 25 9 7 27 27 C 1.38520 * 106.42563 * 179.97438 * 6 5 4 28 28 N 1.32324 * 108.21869 * 0.02562 * 27 6 5 29 29 C 1.33202 * 109.81399 * 0.02562 * 28 27 6 30 30 C 1.36284 * 120.19485 * 180.02562 * 2 1 3 31 31 H 1.09001 * 109.46998 * 269.97625 * 1 2 3 32 32 H 1.08999 * 109.47171 * 29.97119 * 1 2 3 33 33 H 1.08998 * 109.47363 * 149.97577 * 1 2 3 34 34 H 1.08004 * 119.94228 * 0.03008 * 3 2 1 35 35 H 1.08007 * 119.67629 * 180.02562 * 4 3 2 36 36 H 1.08993 * 113.53063 * 266.05024 * 10 9 7 37 37 H 1.09000 * 113.52649 * 36.61751 * 10 9 7 38 38 H 1.08998 * 109.51284 * 262.31783 * 13 11 10 39 39 H 1.08998 * 109.50871 * 22.42146 * 13 11 10 40 40 H 1.09002 * 109.70356 * 61.28166 * 14 13 11 41 41 H 1.08997 * 109.70641 * 181.85640 * 14 13 11 42 42 H 0.97007 * 119.99690 * 179.97438 * 19 18 16 43 43 H 1.09008 * 108.79081 * 80.89307 * 24 15 14 44 44 H 1.08996 * 108.79042 * 199.10921 * 24 15 14 45 45 H 1.08004 * 125.88871 * 179.97438 * 27 6 5 46 46 H 1.08000 * 120.30469 * 0.25236 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2120 1.2116 0.0000 4 6 3.5646 1.2099 -0.0005 5 7 4.2560 0.0393 -0.0016 6 6 5.6096 -0.2441 -0.0027 7 6 6.6736 0.6935 -0.0037 8 8 6.4352 1.8849 -0.0847 9 7 7.9486 0.2658 0.0851 10 6 8.6418 -1.0336 0.1016 11 6 9.8575 -0.3201 -0.5207 12 1 10.8277 -0.6634 -0.1616 13 6 9.7485 -0.2592 -2.0463 14 6 10.2932 1.0853 -2.5373 15 7 9.5193 2.1541 -1.9002 16 6 8.8797 3.0843 -2.6754 17 1 7.9439 3.5108 -2.3455 18 6 9.4341 3.4790 -3.8853 19 7 8.7091 4.1531 -4.7526 20 14 11.2091 3.0534 -4.2823 21 1 11.2575 1.7577 -5.0062 22 1 11.7948 4.1190 -5.1350 23 1 11.9863 2.9454 -3.0215 24 6 9.4253 2.2355 -0.4486 25 6 9.2715 0.8836 0.2024 26 1 9.6010 0.9257 1.2405 27 6 5.7206 -1.6249 -0.0029 28 7 4.5009 -2.1380 -0.0024 29 6 3.5988 -1.1580 -0.0025 30 6 2.1925 -1.1779 -0.0005 31 1 -0.3633 -0.0004 1.0277 32 1 -0.3633 0.8902 -0.5134 33 1 -0.3634 -0.8897 -0.5142 34 1 1.6742 2.1482 0.0005 35 1 4.1005 2.1476 -0.0001 36 1 8.8280 -1.4147 1.1056 37 1 8.1890 -1.7767 -0.5548 38 1 10.3299 -1.0699 -2.4854 39 1 8.7039 -0.3593 -2.3409 40 1 11.3439 1.1784 -2.2628 41 1 10.1891 1.1506 -3.6203 42 1 9.0967 4.4293 -5.5979 43 1 10.3276 2.7114 -0.0644 44 1 8.5665 2.8532 -0.1864 45 1 6.6436 -2.1858 -0.0040 46 1 1.6607 -2.1179 -0.0051 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084367015.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:50 Heat of formation + Delta-G solvation = 135.952419 kcal Electronic energy + Delta-G solvation = -30218.091271 eV Core-core repulsion = 26304.792928 eV Total energy + Delta-G solvation = -3913.298343 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -42.97790 -40.79658 -38.13083 -37.61666 -35.60255 -34.28752 -32.05516 -31.23932 -31.11634 -30.16764 -29.35244 -27.38100 -26.92351 -23.93243 -23.89343 -23.53513 -22.86048 -21.59898 -21.08617 -20.45269 -18.41762 -17.46683 -17.03477 -16.87463 -16.36394 -16.26412 -15.65155 -15.38498 -15.10917 -15.08411 -14.68603 -14.12536 -13.92361 -13.77078 -13.59220 -13.41827 -13.36727 -12.88681 -12.78566 -12.46106 -12.34401 -12.22991 -11.99759 -11.87957 -11.83945 -11.37642 -11.08534 -10.90040 -10.75458 -10.73365 -10.39623 -10.19043 -9.91871 -9.65832 -9.42028 -9.30683 -9.02483 -8.64619 -8.39493 -7.87979 -6.80403 -5.84098 -3.27153 0.58561 0.73942 2.21764 2.32123 3.19536 3.31884 3.34200 3.50244 3.53304 3.59694 3.93965 4.36337 4.43418 4.47975 4.53623 4.58484 4.78347 4.90267 4.99393 5.01693 5.02813 5.15172 5.23643 5.24119 5.34623 5.40272 5.42817 5.49505 5.54917 5.63157 5.70092 5.76380 5.82991 5.91089 5.97243 6.03449 6.18175 6.28541 6.32784 6.34834 6.40202 6.61383 6.66045 6.82323 6.85812 6.95160 7.60354 8.00255 8.15319 8.44818 8.50340 9.08690 9.82202 10.16667 11.32305 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014922 B = 0.003566 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.911369 B = 7851.079125 C = 8946.084988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.054 4.054 3 C -0.148 4.148 4 C 0.086 3.914 5 N -0.325 5.325 6 C -0.127 4.127 7 C 0.626 3.374 8 O -0.535 6.535 9 N -0.624 5.624 10 C 0.089 3.911 11 C -0.110 4.110 12 H 0.099 0.901 13 C -0.118 4.118 14 C 0.125 3.875 15 N -0.597 5.597 16 C -0.251 4.251 17 H 0.084 0.916 18 C 0.021 3.979 19 N -0.916 5.916 20 Si 0.891 3.109 21 H -0.290 1.290 22 H -0.306 1.306 23 H -0.269 1.269 24 C 0.144 3.856 25 C 0.133 3.867 26 H 0.082 0.918 27 C 0.096 3.904 28 N -0.501 5.501 29 C 0.244 3.756 30 C -0.100 4.100 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.156 0.844 35 H 0.180 0.820 36 H 0.085 0.915 37 H 0.079 0.921 38 H 0.060 0.940 39 H 0.067 0.933 40 H 0.029 0.971 41 H 0.073 0.927 42 H 0.261 0.739 43 H 0.025 0.975 44 H 0.079 0.921 45 H 0.191 0.809 46 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.591 -13.245 13.141 20.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.060 4.060 3 C -0.169 4.169 4 C -0.038 4.038 5 N 0.005 4.995 6 C -0.241 4.241 7 C 0.418 3.582 8 O -0.413 6.413 9 N -0.360 5.360 10 C -0.034 4.034 11 C -0.129 4.129 12 H 0.117 0.883 13 C -0.157 4.157 14 C -0.001 4.001 15 N -0.320 5.320 16 C -0.380 4.380 17 H 0.101 0.899 18 C -0.177 4.177 19 N -0.559 5.559 20 Si 0.722 3.278 21 H -0.218 1.218 22 H -0.234 1.234 23 H -0.194 1.194 24 C 0.017 3.983 25 C 0.029 3.971 26 H 0.099 0.901 27 C -0.063 4.063 28 N -0.220 5.220 29 C 0.004 3.996 30 C -0.120 4.120 31 H 0.096 0.904 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.173 0.827 35 H 0.197 0.803 36 H 0.103 0.897 37 H 0.097 0.903 38 H 0.079 0.921 39 H 0.085 0.915 40 H 0.047 0.953 41 H 0.091 0.909 42 H 0.071 0.929 43 H 0.043 0.957 44 H 0.097 0.903 45 H 0.207 0.793 46 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -10.115 -13.188 12.948 21.069 hybrid contribution 1.220 0.556 -0.379 1.393 sum -8.895 -12.632 12.570 19.917 Atomic orbital electron populations 1.20794 0.89421 1.03636 1.02972 1.19871 0.97202 0.92031 0.96944 1.20858 0.91887 0.99529 1.04580 1.22141 0.93053 0.89836 0.98768 1.42401 1.06448 1.07671 1.42939 1.19872 0.82560 0.96204 1.25486 1.14650 0.79767 0.86591 0.77199 1.90851 1.82996 1.16598 1.50893 1.48914 1.03845 1.10344 1.72853 1.23546 0.91316 0.87867 1.00682 1.22725 0.97182 0.95769 0.97198 0.88294 1.21864 1.02250 0.99343 0.92237 1.21278 0.93891 0.87125 0.97783 1.43753 1.59342 1.28662 1.00269 1.18973 1.02478 1.15759 1.00771 0.89871 1.25391 0.97619 0.97552 0.97152 1.69792 1.35867 1.42003 1.08286 0.86845 0.87250 0.75986 0.77684 1.21791 1.23428 1.19379 1.20283 1.00418 0.92794 0.84763 1.22221 0.79149 0.96778 0.98924 0.90064 1.23423 0.96536 0.89657 0.96692 1.70490 0.99023 1.28821 1.23654 1.21032 0.94476 0.80331 1.03762 1.20092 0.87970 0.99711 1.04227 0.90398 0.90711 0.90831 0.82687 0.80296 0.89652 0.90295 0.92150 0.91458 0.95349 0.90878 0.92937 0.95714 0.90257 0.79280 0.82957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.64 10.02 36.01 0.36 -0.28 16 2 C -0.05 -0.51 5.88 -104.60 -0.62 -1.13 16 3 C -0.15 -1.54 9.68 -39.92 -0.39 -1.93 16 4 C 0.09 1.21 10.51 -16.79 -0.18 1.04 16 5 N -0.33 -5.19 2.96 -60.14 -0.18 -5.37 16 6 C -0.13 -2.16 6.83 -83.47 -0.57 -2.73 16 7 C 0.63 11.89 7.80 -14.89 -0.12 11.77 16 8 O -0.54 -12.06 14.52 5.12 0.07 -11.99 16 9 N -0.62 -10.18 3.34 -191.41 -0.64 -10.82 16 10 C 0.09 1.03 6.34 -11.53 -0.07 0.96 16 11 C -0.11 -1.47 4.57 -90.45 -0.41 -1.89 16 12 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 13 C -0.12 -1.97 5.69 -26.62 -0.15 -2.13 16 14 C 0.12 2.69 4.10 -3.95 -0.02 2.68 16 15 N -0.60 -14.59 2.74 -175.06 -0.48 -15.07 16 16 C -0.25 -7.40 9.94 -15.06 -0.15 -7.54 16 17 H 0.08 2.75 8.04 -52.49 -0.42 2.33 16 18 C 0.02 0.63 5.30 -17.43 -0.09 0.53 16 19 N -0.92 -29.22 13.97 55.49 0.78 -28.45 16 20 Si 0.89 22.89 24.29 -169.99 -4.13 18.76 16 21 H -0.29 -7.15 6.66 56.52 0.38 -6.77 16 22 H -0.31 -8.03 7.11 56.52 0.40 -7.63 16 23 H -0.27 -6.65 6.41 56.52 0.36 -6.29 16 24 C 0.14 3.00 6.12 -5.57 -0.03 2.97 16 25 C 0.13 2.13 3.99 -77.95 -0.31 1.82 16 26 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 27 C 0.10 1.42 11.03 -17.24 -0.19 1.23 16 28 N -0.50 -7.75 11.25 -12.27 -0.14 -7.89 16 29 C 0.24 3.60 7.77 -156.06 -1.21 2.39 16 30 C -0.10 -1.11 9.75 -39.38 -0.38 -1.50 16 31 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.37 8.09 -51.93 -0.42 -0.05 16 33 H 0.07 0.36 8.08 -51.93 -0.42 -0.06 16 34 H 0.16 1.14 8.06 -52.48 -0.42 0.71 16 35 H 0.18 2.68 6.81 -52.48 -0.36 2.33 16 36 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.08 0.83 6.15 -51.93 -0.32 0.51 16 38 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.07 1.28 7.68 -51.93 -0.40 0.88 16 40 H 0.03 0.59 6.95 -51.93 -0.36 0.23 16 41 H 0.07 1.76 4.44 -51.93 -0.23 1.53 16 42 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16 43 H 0.03 0.50 8.14 -51.92 -0.42 0.08 16 44 H 0.08 1.87 6.46 -51.93 -0.34 1.53 16 45 H 0.19 2.18 5.09 -52.48 -0.27 1.92 16 46 H 0.15 1.32 8.06 -52.49 -0.42 0.90 16 LS Contribution 359.66 15.07 5.42 5.42 Total: -1.00 -37.57 359.66 -9.94 -47.51 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -6.11 Total: 1.63 kcal Atomic # 6 Polarization: 10.79 SS G_CDS: -4.53 Total: 6.26 kcal Atomic # 7 Polarization: -66.93 SS G_CDS: -0.66 Total: -67.59 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: 0.07 Total: -11.99 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -4.13 Total: 18.76 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -37.57 -9.94 -47.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084367015.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.466 kcal (2) G-P(sol) polarization free energy of solvation -37.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds