Wall clock time and date at job start Sat Apr 11 2020 06:04:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.40173 * 120.19324 * 2 1 4 4 C 1.35263 * 120.12201 * 180.02562 * 3 2 1 5 5 N 1.35949 * 120.63954 * 0.02562 * 4 3 2 6 6 C 1.38297 * 132.39635 * 179.97438 * 5 4 3 7 7 C 1.41820 * 126.78515 * 359.97438 * 6 5 4 8 8 O 1.21775 * 120.00054 * 355.57948 * 7 6 5 9 9 N 1.34774 * 119.99495 * 175.58322 * 7 6 5 10 10 C 1.47284 * 136.54823 * 5.28570 * 9 7 6 11 11 C 1.54084 * 87.60725 * 151.36604 * 10 9 7 12 12 H 1.09005 * 115.04500 * 142.50129 * 11 10 9 13 13 C 1.53064 * 111.39667 * 273.97673 * 11 10 9 14 14 C 1.53145 * 109.21558 * 142.39538 * 13 11 10 15 15 N 1.46534 * 108.25030 * 301.58983 * 14 13 11 16 16 C 1.36936 * 119.73757 * 236.39643 * 15 14 13 17 17 H 1.08000 * 119.99990 * 146.96977 * 16 15 14 18 18 C 1.38815 * 120.00132 * 326.97267 * 16 15 14 19 19 N 1.31617 * 119.99906 * 166.16002 * 18 16 15 20 20 Si 1.86797 * 119.99679 * 346.15406 * 18 16 15 21 21 H 1.48498 * 109.47194 * 91.62507 * 20 18 16 22 22 H 1.48510 * 109.47030 * 211.61898 * 20 18 16 23 23 H 1.48503 * 109.47552 * 331.61781 * 20 18 16 24 24 C 1.45697 * 120.52590 * 56.42436 * 15 14 13 25 25 C 1.46472 * 136.53696 * 184.92012 * 9 7 6 26 26 H 1.08998 * 111.44395 * 96.38288 * 25 9 7 27 27 C 1.38520 * 106.42563 * 179.97438 * 6 5 4 28 28 N 1.32324 * 108.21869 * 0.02562 * 27 6 5 29 29 C 1.33202 * 109.81399 * 0.02562 * 28 27 6 30 30 C 1.36284 * 120.19485 * 180.02562 * 2 1 3 31 31 H 1.09001 * 109.46998 * 269.97625 * 1 2 3 32 32 H 1.08999 * 109.47171 * 29.97119 * 1 2 3 33 33 H 1.08998 * 109.47363 * 149.97577 * 1 2 3 34 34 H 1.08004 * 119.94228 * 0.03008 * 3 2 1 35 35 H 1.08007 * 119.67629 * 180.02562 * 4 3 2 36 36 H 1.08993 * 113.53063 * 266.05024 * 10 9 7 37 37 H 1.09000 * 113.52649 * 36.61751 * 10 9 7 38 38 H 1.08998 * 109.51284 * 262.31783 * 13 11 10 39 39 H 1.08998 * 109.50871 * 22.42146 * 13 11 10 40 40 H 1.09002 * 109.70356 * 61.28166 * 14 13 11 41 41 H 1.08997 * 109.70641 * 181.85640 * 14 13 11 42 42 H 0.97007 * 119.99690 * 179.97438 * 19 18 16 43 43 H 1.09008 * 108.79081 * 80.89307 * 24 15 14 44 44 H 1.08996 * 108.79042 * 199.10921 * 24 15 14 45 45 H 1.08004 * 125.88871 * 179.97438 * 27 6 5 46 46 H 1.08000 * 120.30469 * 0.25236 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2120 1.2116 0.0000 4 6 3.5646 1.2099 -0.0005 5 7 4.2560 0.0393 -0.0016 6 6 5.6096 -0.2441 -0.0027 7 6 6.6736 0.6935 -0.0037 8 8 6.4352 1.8849 -0.0847 9 7 7.9486 0.2658 0.0851 10 6 8.6418 -1.0336 0.1016 11 6 9.8575 -0.3201 -0.5207 12 1 10.8277 -0.6634 -0.1616 13 6 9.7485 -0.2592 -2.0463 14 6 10.2932 1.0853 -2.5373 15 7 9.5193 2.1541 -1.9002 16 6 8.8797 3.0843 -2.6754 17 1 7.9439 3.5108 -2.3455 18 6 9.4341 3.4790 -3.8853 19 7 8.7091 4.1531 -4.7526 20 14 11.2091 3.0534 -4.2823 21 1 11.2575 1.7577 -5.0062 22 1 11.7948 4.1190 -5.1350 23 1 11.9863 2.9454 -3.0215 24 6 9.4253 2.2355 -0.4486 25 6 9.2715 0.8836 0.2024 26 1 9.6010 0.9257 1.2405 27 6 5.7206 -1.6249 -0.0029 28 7 4.5009 -2.1380 -0.0024 29 6 3.5988 -1.1580 -0.0025 30 6 2.1925 -1.1779 -0.0005 31 1 -0.3633 -0.0004 1.0277 32 1 -0.3633 0.8902 -0.5134 33 1 -0.3634 -0.8897 -0.5142 34 1 1.6742 2.1482 0.0005 35 1 4.1005 2.1476 -0.0001 36 1 8.8280 -1.4147 1.1056 37 1 8.1890 -1.7767 -0.5548 38 1 10.3299 -1.0699 -2.4854 39 1 8.7039 -0.3593 -2.3409 40 1 11.3439 1.1784 -2.2628 41 1 10.1891 1.1506 -3.6203 42 1 9.0967 4.4293 -5.5979 43 1 10.3276 2.7114 -0.0644 44 1 8.5665 2.8532 -0.1864 45 1 6.6436 -2.1858 -0.0040 46 1 1.6607 -2.1179 -0.0051 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084367015.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:48 Heat of formation + Delta-G solvation = 109.067782 kcal Electronic energy + Delta-G solvation = -30219.257076 eV Core-core repulsion = 26304.792928 eV Total energy + Delta-G solvation = -3914.464148 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -44.05511 -42.03759 -39.35697 -38.77764 -37.35825 -35.26683 -34.02369 -32.78325 -32.41478 -31.20259 -30.51420 -28.93648 -27.90385 -25.53852 -25.16833 -24.77023 -24.12589 -22.90515 -22.29697 -21.70658 -19.72410 -19.03999 -18.37956 -17.97807 -17.73735 -17.44582 -17.27252 -16.87775 -16.54502 -16.10143 -15.71896 -15.49527 -15.39895 -15.10137 -14.95345 -14.72959 -14.42264 -14.28149 -14.08198 -13.91846 -13.56860 -13.47797 -13.06633 -12.92568 -12.82688 -12.72555 -12.64613 -12.59061 -12.23270 -12.13845 -11.61753 -11.57825 -11.47119 -11.42398 -11.24659 -10.77920 -10.73070 -10.07984 -9.70815 -8.95571 -8.80792 -8.17868 -5.58175 -0.40889 -0.29158 1.14801 1.21460 1.27436 1.39571 1.50965 2.04818 2.27772 2.36063 2.39925 2.97864 3.07258 3.27464 3.36489 3.38303 3.50059 3.66487 3.76116 3.84975 3.99316 4.07790 4.09074 4.31581 4.31780 4.35454 4.46106 4.54227 4.57953 4.62863 4.70828 4.73538 4.80192 4.82915 4.86995 4.89664 5.01892 5.03595 5.14180 5.18258 5.21313 5.25728 5.32542 5.47909 5.55321 5.80371 5.90966 6.11988 6.48864 6.76754 6.96647 7.12701 7.64371 7.97417 9.03574 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014922 B = 0.003566 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.911369 B = 7851.079125 C = 8946.084988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.040 4.040 3 C -0.123 4.123 4 C 0.043 3.957 5 N -0.336 5.336 6 C -0.173 4.173 7 C 0.614 3.386 8 O -0.599 6.599 9 N -0.634 5.634 10 C 0.098 3.902 11 C -0.096 4.096 12 H 0.153 0.847 13 C -0.112 4.112 14 C 0.115 3.885 15 N -0.610 5.610 16 C -0.245 4.245 17 H 0.016 0.984 18 C -0.045 4.045 19 N -0.971 5.971 20 Si 0.974 3.026 21 H -0.268 1.268 22 H -0.313 1.313 23 H -0.247 1.247 24 C 0.142 3.858 25 C 0.122 3.878 26 H 0.122 0.878 27 C 0.114 3.886 28 N -0.519 5.519 29 C 0.232 3.768 30 C -0.107 4.107 31 H 0.097 0.903 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.187 0.813 35 H 0.152 0.848 36 H 0.134 0.866 37 H 0.092 0.908 38 H 0.102 0.898 39 H 0.033 0.967 40 H 0.053 0.947 41 H 0.044 0.956 42 H 0.261 0.739 43 H 0.038 0.962 44 H 0.031 0.969 45 H 0.221 0.779 46 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.604 -17.479 14.731 24.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.046 4.046 3 C -0.143 4.143 4 C -0.082 4.082 5 N -0.005 5.005 6 C -0.286 4.286 7 C 0.407 3.593 8 O -0.482 6.482 9 N -0.368 5.368 10 C -0.023 4.023 11 C -0.114 4.114 12 H 0.170 0.830 13 C -0.151 4.151 14 C -0.009 4.009 15 N -0.335 5.335 16 C -0.376 4.376 17 H 0.034 0.966 18 C -0.238 4.238 19 N -0.618 5.618 20 Si 0.801 3.199 21 H -0.195 1.195 22 H -0.243 1.243 23 H -0.170 1.170 24 C 0.016 3.984 25 C 0.019 3.981 26 H 0.140 0.860 27 C -0.047 4.047 28 N -0.239 5.239 29 C -0.007 4.007 30 C -0.127 4.127 31 H 0.115 0.885 32 H 0.106 0.894 33 H 0.107 0.893 34 H 0.204 0.796 35 H 0.170 0.830 36 H 0.151 0.849 37 H 0.110 0.890 38 H 0.121 0.879 39 H 0.052 0.948 40 H 0.071 0.929 41 H 0.062 0.938 42 H 0.070 0.930 43 H 0.056 0.944 44 H 0.050 0.950 45 H 0.237 0.763 46 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -9.097 -17.500 14.586 24.531 hybrid contribution 0.655 1.948 -0.841 2.221 sum -8.442 -15.552 13.745 22.407 Atomic orbital electron populations 1.20926 0.85896 1.05122 1.04569 1.20366 0.99376 0.90696 0.94178 1.21362 0.90383 1.01711 1.00861 1.22163 0.94468 0.89005 1.02535 1.42553 1.06512 1.08382 1.43098 1.19886 0.82781 0.96853 1.29066 1.15092 0.81265 0.86190 0.76706 1.90813 1.84151 1.19119 1.54146 1.49131 1.03111 1.12979 1.71568 1.23856 0.88959 0.86002 1.03450 1.22756 1.00328 0.94032 0.94303 0.82974 1.21771 1.00540 0.97513 0.95282 1.21418 0.94769 0.88615 0.96105 1.43810 1.59430 1.28843 1.01392 1.18668 1.00543 1.16801 1.01557 0.96605 1.26233 1.02886 0.97967 0.96723 1.69988 1.38244 1.44494 1.09054 0.85528 0.80041 0.76166 0.78150 1.19452 1.24268 1.17044 1.20337 0.98869 0.95989 0.83180 1.22493 0.79912 0.94752 1.00964 0.86028 1.23857 0.97467 0.88637 0.94748 1.70511 0.99348 1.29026 1.24973 1.21719 0.95864 0.79840 1.03314 1.20591 0.86521 1.01675 1.03893 0.88472 0.89396 0.89259 0.79559 0.83045 0.84883 0.89002 0.87949 0.94786 0.92894 0.93823 0.93002 0.94434 0.95005 0.76289 0.80118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.84 10.02 71.24 0.71 -0.13 16 2 C -0.04 -0.67 5.88 -19.85 -0.12 -0.78 16 3 C -0.12 -2.55 9.68 22.05 0.21 -2.34 16 4 C 0.04 1.33 10.51 83.37 0.88 2.20 16 5 N -0.34 -11.46 2.96 -344.20 -1.02 -12.48 16 6 C -0.17 -6.20 6.83 39.08 0.27 -5.93 16 7 C 0.61 25.15 7.80 85.13 0.66 25.81 16 8 O -0.60 -30.59 14.52 -4.59 -0.07 -30.66 16 9 N -0.63 -20.53 3.34 -877.67 -2.93 -23.46 16 10 C 0.10 1.85 6.34 81.10 0.51 2.36 16 11 C -0.10 -2.11 4.57 -10.68 -0.05 -2.16 16 12 H 0.15 1.96 8.14 -2.38 -0.02 1.94 16 13 C -0.11 -3.43 5.69 30.66 0.17 -3.25 16 14 C 0.11 4.78 4.10 86.42 0.35 5.13 16 15 N -0.61 -30.83 2.74 -707.77 -1.94 -32.77 16 16 C -0.25 -15.63 9.94 84.03 0.84 -14.80 16 17 H 0.02 1.20 8.04 -2.91 -0.02 1.18 16 18 C -0.04 -2.83 5.30 84.86 0.45 -2.38 16 19 N -0.97 -66.11 13.97 21.65 0.30 -65.81 16 20 Si 0.97 48.57 24.29 68.60 1.67 50.24 16 21 H -0.27 -12.35 6.66 99.48 0.66 -11.69 16 22 H -0.31 -15.91 7.11 99.48 0.71 -15.21 16 23 H -0.25 -11.29 6.41 99.48 0.64 -10.65 16 24 C 0.14 6.13 6.12 85.82 0.53 6.65 16 25 C 0.12 3.69 3.99 38.51 0.15 3.85 16 26 H 0.12 2.75 8.14 -2.39 -0.02 2.73 16 27 C 0.11 3.30 11.03 84.69 0.93 4.24 16 28 N -0.52 -15.79 11.25 -192.74 -2.17 -17.95 16 29 C 0.23 6.87 7.77 134.00 1.04 7.91 16 30 C -0.11 -2.22 9.75 22.40 0.22 -2.00 16 31 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.09 0.52 8.09 -2.39 -0.02 0.50 16 33 H 0.09 0.49 8.08 -2.39 -0.02 0.47 16 34 H 0.19 2.52 8.06 -2.91 -0.02 2.49 16 35 H 0.15 5.42 6.81 -2.91 -0.02 5.40 16 36 H 0.13 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.09 1.54 6.15 -2.39 -0.01 1.53 16 38 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 39 H 0.03 1.26 7.68 -2.39 -0.02 1.24 16 40 H 0.05 1.97 6.95 -2.39 -0.02 1.95 16 41 H 0.04 2.06 4.44 -2.39 -0.01 2.05 16 42 H 0.26 16.68 8.31 -92.70 -0.77 15.91 16 43 H 0.04 1.50 8.14 -2.38 -0.02 1.49 16 44 H 0.03 1.65 6.46 -2.39 -0.02 1.64 16 45 H 0.22 4.52 5.09 -2.91 -0.01 4.51 16 46 H 0.18 2.61 8.06 -2.91 -0.02 2.59 16 Total: -1.00 -96.80 359.66 2.52 -94.28 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: 0.90 Total: 14.23 kcal Atomic # 6 Polarization: 16.62 SS G_CDS: 7.77 Total: 24.39 kcal Atomic # 7 Polarization: -144.73 SS G_CDS: -7.75 Total: -152.47 kcal Atomic # 8 Polarization: -30.59 SS G_CDS: -0.07 Total: -30.66 kcal Atomic # 14 Polarization: 48.57 SS G_CDS: 1.67 Total: 50.24 kcal Total: -96.80 2.52 -94.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084367015.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 203.348 kcal (2) G-P(sol) polarization free energy of solvation -96.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds