Wall clock time and date at job start Sat Apr 11 2020 06:04:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.40166 * 120.29633 * 2 1 4 4 C 1.35186 * 120.31969 * 180.02562 * 3 2 1 5 5 N 1.36240 * 120.70554 * 359.97438 * 4 3 2 6 6 N 1.40014 * 132.01037 * 180.02562 * 5 4 3 7 7 C 1.30748 * 109.60333 * 180.02562 * 6 5 4 8 8 C 1.40552 * 108.74503 * 359.97438 * 7 6 5 9 9 C 1.46564 * 126.58131 * 179.97438 * 8 7 6 10 10 O 1.21718 * 120.00297 * 180.02562 * 9 8 7 11 11 N 1.34775 * 119.99857 * 359.75206 * 9 8 7 12 12 C 1.47288 * 136.54455 * 0.27769 * 11 9 8 13 13 C 1.54077 * 87.61088 * 151.34799 * 12 11 9 14 14 H 1.09002 * 115.04870 * 141.62583 * 13 12 11 15 15 C 1.53066 * 111.38892 * 273.97437 * 13 12 11 16 16 C 1.52014 * 109.68915 * 142.51362 * 15 13 12 17 17 N 1.46533 * 108.10616 * 301.56571 * 16 15 13 18 18 C 1.36940 * 119.73468 * 236.29771 * 17 16 15 19 19 H 1.08002 * 120.00199 * 25.18653 * 18 17 16 20 20 C 1.38813 * 119.99792 * 205.19144 * 18 17 16 21 21 N 1.31620 * 120.00343 * 14.49891 * 20 18 17 22 22 Si 1.86806 * 119.99860 * 194.50161 * 20 18 17 23 23 H 1.48495 * 109.47090 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.46895 * 120.00277 * 22 20 18 25 25 H 1.48500 * 109.47036 * 239.99661 * 22 20 18 26 26 C 1.45698 * 120.52842 * 56.31321 * 17 16 15 27 27 C 1.46463 * 136.54548 * 179.89565 * 11 9 8 28 28 H 1.09008 * 111.43678 * 96.40093 * 27 11 9 29 29 C 1.36582 * 120.08382 * 0.25619 * 5 4 3 30 30 C 1.36451 * 120.29932 * 180.02562 * 2 1 3 31 31 H 1.08996 * 109.47096 * 90.00185 * 1 2 3 32 32 H 1.08995 * 109.47351 * 210.00274 * 1 2 3 33 33 H 1.09002 * 109.47336 * 329.99955 * 1 2 3 34 34 H 1.08005 * 119.83811 * 0.04467 * 3 2 1 35 35 H 1.07999 * 119.64676 * 180.02562 * 4 3 2 36 36 H 1.08003 * 125.62253 * 180.02562 * 7 6 5 37 37 H 1.09003 * 113.52970 * 266.03014 * 12 11 9 38 38 H 1.09003 * 113.52869 * 36.65986 * 12 11 9 39 39 H 1.08997 * 109.51445 * 262.31859 * 15 13 12 40 40 H 1.08992 * 109.51649 * 22.48272 * 15 13 12 41 41 H 1.08994 * 109.88162 * 181.85836 * 16 15 13 42 42 H 1.09001 * 109.70980 * 61.16801 * 16 15 13 43 43 H 0.97001 * 120.00213 * 180.02562 * 21 20 18 44 44 H 1.08997 * 108.79098 * 199.09328 * 26 17 16 45 45 H 1.09002 * 108.69837 * 80.82274 * 26 17 16 46 46 H 1.08001 * 120.36788 * 0.02562 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2140 1.2102 0.0000 4 6 3.5659 1.2108 -0.0005 5 7 4.2620 0.0397 -0.0005 6 7 5.6351 -0.2342 -0.0005 7 6 5.8244 -1.5279 -0.0011 8 6 4.5728 -2.1675 -0.0009 9 6 4.3305 -3.6130 -0.0019 10 8 3.1904 -4.0390 -0.0020 11 7 5.3703 -4.4705 -0.0082 12 6 6.8397 -4.3692 -0.0102 13 6 6.8698 -5.7252 0.7208 14 1 7.6717 -6.3969 0.4145 15 6 6.7372 -5.5461 2.2351 16 6 5.8888 -6.6681 2.8113 17 7 4.5797 -6.6328 2.1538 18 6 3.4430 -6.5210 2.9093 19 1 3.4871 -6.0642 3.8870 20 6 2.2341 -6.9947 2.4184 21 7 2.2163 -7.7959 1.3743 22 14 0.6324 -6.4952 3.2398 23 1 0.9229 -5.5954 4.3848 24 1 -0.2272 -5.7862 2.2581 25 1 -0.0718 -7.7073 3.7297 26 6 4.4778 -6.7161 0.7028 27 6 5.5496 -5.9241 -0.0094 28 1 5.7046 -6.3055 -1.0187 29 6 3.5960 -1.1527 -0.0053 30 6 2.1954 -1.1781 -0.0005 31 1 -0.3633 0.0000 -1.0276 32 1 -0.3634 -0.8899 0.5138 33 1 -0.3634 0.8900 0.5138 34 1 1.6762 2.1468 0.0007 35 1 4.0997 2.1496 -0.0001 36 1 6.7841 -2.0233 -0.0008 37 1 7.2768 -4.4031 -1.0082 38 1 7.2197 -3.5426 0.5902 39 1 7.7260 -5.5735 2.6929 40 1 6.2629 -4.5882 2.4484 41 1 5.7650 -6.5254 3.8847 42 1 6.3698 -7.6276 2.6211 43 1 1.3714 -8.1267 1.0311 44 1 3.5016 -6.3397 0.3972 45 1 4.5586 -7.7619 0.4063 46 1 1.6663 -2.1197 -0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084426017.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:53 Heat of formation + Delta-G solvation = 146.808663 kcal Electronic energy + Delta-G solvation = -30501.992438 eV Core-core repulsion = 26589.164857 eV Total energy + Delta-G solvation = -3912.827581 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.15323 -40.37463 -37.82955 -37.15606 -35.14557 -33.59893 -32.10496 -31.37150 -30.13188 -29.95254 -28.56115 -27.13113 -26.71834 -24.02904 -23.80957 -22.93432 -22.22981 -21.71395 -20.85738 -19.61058 -18.07142 -17.43826 -16.80376 -16.44356 -15.89930 -15.88578 -15.53311 -15.25959 -14.90753 -14.63093 -14.09716 -13.76464 -13.69594 -13.61454 -13.29574 -13.13645 -12.92562 -12.73965 -12.54681 -12.32651 -12.05185 -11.91830 -11.79623 -11.57106 -11.37536 -11.00911 -10.84822 -10.62424 -10.53386 -10.39941 -10.31036 -10.08962 -9.77990 -9.70277 -9.47562 -9.40990 -8.85835 -8.22722 -8.02318 -7.57078 -6.50960 -5.58068 -2.99366 0.58553 0.93511 2.09247 2.30952 3.14884 3.42643 3.51025 3.58079 3.59445 4.03757 4.12534 4.41092 4.44539 4.66461 4.70851 4.75420 4.97900 5.06224 5.12390 5.27018 5.31260 5.36524 5.41984 5.50085 5.52948 5.59353 5.63164 5.68369 5.74643 5.80467 5.90486 5.97146 6.17538 6.21540 6.26093 6.34115 6.39299 6.46842 6.52872 6.62995 6.70640 6.74255 6.87112 7.08819 7.41824 7.60104 7.86609 8.03025 8.49330 8.65762 8.99424 9.43674 10.08222 10.55578 11.50103 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010163 B = 0.004919 C = 0.003606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2754.529151 B = 5690.361615 C = 7762.947434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.052 4.052 3 C -0.156 4.156 4 C 0.107 3.893 5 N -0.271 5.271 6 N -0.327 5.327 7 C 0.110 3.890 8 C -0.291 4.291 9 C 0.623 3.377 10 O -0.525 6.525 11 N -0.629 5.629 12 C 0.090 3.910 13 C -0.112 4.112 14 H 0.092 0.908 15 C -0.114 4.114 16 C 0.148 3.852 17 N -0.585 5.585 18 C -0.248 4.248 19 H 0.061 0.939 20 C 0.011 3.989 21 N -0.904 5.904 22 Si 0.899 3.101 23 H -0.281 1.281 24 H -0.289 1.289 25 H -0.293 1.293 26 C 0.167 3.833 27 C 0.122 3.878 28 H 0.071 0.929 29 C 0.162 3.838 30 C -0.101 4.101 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.155 0.845 35 H 0.170 0.830 36 H 0.198 0.802 37 H 0.078 0.922 38 H 0.070 0.930 39 H 0.053 0.947 40 H 0.061 0.939 41 H 0.055 0.945 42 H 0.018 0.982 43 H 0.250 0.750 44 H 0.105 0.895 45 H 0.028 0.972 46 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.182 16.686 -5.424 18.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.057 4.057 3 C -0.178 4.178 4 C -0.020 4.020 5 N -0.035 5.035 6 N -0.149 5.149 7 C -0.069 4.069 8 C -0.306 4.306 9 C 0.413 3.587 10 O -0.401 6.401 11 N -0.365 5.365 12 C -0.034 4.034 13 C -0.131 4.131 14 H 0.110 0.890 15 C -0.153 4.153 16 C 0.021 3.979 17 N -0.307 5.307 18 C -0.378 4.378 19 H 0.079 0.921 20 C -0.187 4.187 21 N -0.549 5.549 22 Si 0.730 3.270 23 H -0.206 1.206 24 H -0.215 1.215 25 H -0.220 1.220 26 C 0.041 3.959 27 C 0.018 3.982 28 H 0.089 0.911 29 C 0.042 3.958 30 C -0.121 4.121 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.091 0.909 34 H 0.173 0.827 35 H 0.187 0.813 36 H 0.214 0.786 37 H 0.096 0.904 38 H 0.088 0.912 39 H 0.072 0.928 40 H 0.080 0.920 41 H 0.073 0.927 42 H 0.036 0.964 43 H 0.060 0.940 44 H 0.123 0.877 45 H 0.046 0.954 46 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 5.936 17.649 -5.501 19.416 hybrid contribution -0.996 -0.342 0.238 1.080 sum 4.940 17.307 -5.263 18.752 Atomic orbital electron populations 1.20831 0.89531 1.03761 1.03086 1.20031 0.97375 0.92081 0.96241 1.20797 0.91841 0.99522 1.05621 1.21463 0.91991 0.88257 1.00240 1.46021 1.06359 1.05259 1.45908 1.77509 0.88207 1.17117 1.32029 1.24328 0.99070 0.90293 0.93250 1.19862 0.91126 0.93804 1.25804 1.16130 0.83336 0.82843 0.76361 1.90845 1.20614 1.78227 1.50462 1.49104 1.05096 1.08365 1.73891 1.23432 0.81785 0.98474 0.99698 1.22700 0.97834 0.96029 0.96572 0.89026 1.21625 0.99341 1.01668 0.92706 1.20520 0.87168 0.94231 0.95944 1.43471 1.00738 1.85464 1.01066 1.19121 0.86171 1.32086 1.00396 0.92117 1.24886 0.98191 0.97292 0.98335 1.70018 1.24658 1.33814 1.26395 0.86270 0.84515 0.77639 0.78606 1.20603 1.21538 1.22035 1.20208 0.97483 0.95350 0.82868 1.22563 0.95999 0.81148 0.98516 0.91085 1.19265 0.92980 0.85573 0.98024 1.20853 0.90095 1.00441 1.00703 0.90297 0.90404 0.90914 0.82706 0.81308 0.78588 0.90392 0.91191 0.92802 0.92035 0.92690 0.96383 0.93957 0.87734 0.95392 0.81984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.01 10.03 36.00 0.36 -0.65 16 2 C -0.05 -0.60 5.89 -104.55 -0.62 -1.21 16 3 C -0.16 -1.42 9.67 -39.94 -0.39 -1.80 16 4 C 0.11 1.12 11.17 -16.68 -0.19 0.93 16 5 N -0.27 -3.98 3.86 -10.55 -0.04 -4.02 16 6 N -0.33 -4.98 12.57 30.75 0.39 -4.60 16 7 C 0.11 1.66 11.12 -17.14 -0.19 1.47 16 8 C -0.29 -5.30 6.17 -104.68 -0.65 -5.95 16 9 C 0.62 13.30 7.97 -12.90 -0.10 13.19 16 10 O -0.52 -13.47 14.95 5.17 0.08 -13.39 16 11 N -0.63 -11.88 3.34 -189.51 -0.63 -12.51 16 12 C 0.09 1.22 6.51 -11.56 -0.08 1.14 16 13 C -0.11 -1.73 4.58 -90.45 -0.41 -2.14 16 14 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 15 C -0.11 -1.94 5.61 -27.20 -0.15 -2.09 16 16 C 0.15 3.12 6.44 -4.53 -0.03 3.09 16 17 N -0.58 -15.22 3.02 -175.59 -0.53 -15.75 16 18 C -0.25 -7.23 9.53 -15.06 -0.14 -7.37 16 19 H 0.06 1.76 7.83 -52.49 -0.41 1.35 16 20 C 0.01 0.33 4.94 -17.43 -0.09 0.25 16 21 N -0.90 -27.71 10.94 55.49 0.61 -27.11 16 22 Si 0.90 23.55 29.58 -169.99 -5.03 18.52 16 23 H -0.28 -7.20 7.11 56.52 0.40 -6.80 16 24 H -0.29 -7.67 7.11 56.52 0.40 -7.27 16 25 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 26 C 0.17 4.22 4.59 -5.43 -0.02 4.19 16 27 C 0.12 2.37 4.03 -77.84 -0.31 2.06 16 28 H 0.07 1.26 8.14 -51.92 -0.42 0.84 16 29 C 0.16 2.75 6.76 -84.07 -0.57 2.18 16 30 C -0.10 -1.58 9.38 -39.53 -0.37 -1.95 16 31 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.08 0.76 8.09 -51.93 -0.42 0.34 16 33 H 0.07 0.47 8.10 -51.93 -0.42 0.05 16 34 H 0.16 0.80 8.06 -52.48 -0.42 0.38 16 35 H 0.17 1.18 8.06 -52.49 -0.42 0.76 16 36 H 0.20 2.34 5.17 -52.48 -0.27 2.07 16 37 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.07 0.83 6.01 -51.93 -0.31 0.52 16 39 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.06 1.17 7.68 -51.93 -0.40 0.77 16 41 H 0.05 1.15 7.87 -51.93 -0.41 0.74 16 42 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 44 H 0.10 3.11 4.95 -51.93 -0.26 2.85 16 45 H 0.03 0.76 8.00 -51.93 -0.42 0.34 16 46 H 0.16 2.84 7.12 -52.49 -0.37 2.47 16 LS Contribution 368.04 15.07 5.55 5.55 Total: -1.00 -37.20 368.04 -9.76 -46.96 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -6.20 Total: 1.01 kcal Atomic # 6 Polarization: 9.29 SS G_CDS: -3.94 Total: 5.34 kcal Atomic # 7 Polarization: -63.78 SS G_CDS: -0.21 Total: -63.99 kcal Atomic # 8 Polarization: -13.47 SS G_CDS: 0.08 Total: -13.39 kcal Atomic # 14 Polarization: 23.55 SS G_CDS: -5.03 Total: 18.52 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -37.20 -9.76 -46.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084426017.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 193.768 kcal (2) G-P(sol) polarization free energy of solvation -37.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 156.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.959 kcal (6) G-S(sol) free energy of system = (1) + (5) 146.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds