Wall clock time and date at job start Sat Apr 11 2020 06:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.40390 * 120.21827 * 2 1 4 4 C 1.35030 * 120.44715 * 179.60611 * 3 2 1 5 5 N 1.36541 * 120.59091 * 0.58979 * 4 3 2 6 6 C 1.36244 * 132.78426 * 179.29638 * 5 4 3 7 7 N 1.30179 * 109.82283 * 179.97438 * 6 5 4 8 8 C 1.34896 * 109.73274 * 0.02562 * 7 6 5 9 9 C 1.46293 * 126.49521 * 179.97438 * 8 7 6 10 10 O 1.21773 * 119.99712 * 180.02562 * 9 8 7 11 11 N 1.34768 * 120.00005 * 0.02562 * 9 8 7 12 12 C 1.47811 * 135.01601 * 0.02562 * 11 9 8 13 13 C 1.54654 * 85.79401 * 153.83965 * 12 11 9 14 14 H 1.09004 * 114.44097 * 140.42659 * 13 12 11 15 15 C 1.53015 * 110.83557 * 270.23208 * 13 12 11 16 16 C 1.53099 * 109.44892 * 143.88517 * 15 13 12 17 17 N 1.46615 * 108.00872 * 301.02510 * 16 15 13 18 18 C 1.36943 * 119.89012 * 237.32479 * 17 16 15 19 19 H 1.07996 * 119.99947 * 24.86991 * 18 17 16 20 20 C 1.38811 * 119.99746 * 204.86459 * 18 17 16 21 21 N 1.31620 * 120.00182 * 14.87119 * 20 18 17 22 22 Si 1.86799 * 119.99835 * 194.86789 * 20 18 17 23 23 H 1.48506 * 109.47123 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.47164 * 120.00377 * 22 20 18 25 25 H 1.48501 * 109.47418 * 240.00073 * 22 20 18 26 26 C 1.45325 * 119.57202 * 58.80551 * 17 16 15 27 27 C 1.48762 * 135.02680 * 179.97438 * 11 9 8 28 28 H 1.08999 * 111.44838 * 94.75473 * 27 11 9 29 29 C 1.37274 * 120.02774 * 359.57370 * 5 4 3 30 30 C 1.36331 * 120.22228 * 179.97438 * 2 1 3 31 31 H 1.09001 * 109.47014 * 270.01671 * 1 2 3 32 32 H 1.09001 * 109.47184 * 30.01909 * 1 2 3 33 33 H 1.08995 * 109.46477 * 150.02236 * 1 2 3 34 34 H 1.08007 * 119.77744 * 0.02562 * 3 2 1 35 35 H 1.07995 * 119.70553 * 179.89185 * 4 3 2 36 36 H 1.07997 * 125.09232 * 0.02880 * 6 5 4 37 37 H 1.09001 * 113.81930 * 39.61848 * 12 11 9 38 38 H 1.09002 * 113.81576 * 268.05458 * 12 11 9 39 39 H 1.09006 * 109.47166 * 23.89209 * 15 13 12 40 40 H 1.09002 * 109.47904 * 263.88158 * 15 13 12 41 41 H 1.08997 * 109.75094 * 60.65420 * 16 15 13 42 42 H 1.08997 * 109.75342 * 181.39596 * 16 15 13 43 43 H 0.96999 * 119.99711 * 179.97438 * 21 20 18 44 44 H 1.08994 * 107.70137 * 198.51029 * 26 17 16 45 45 H 1.09001 * 109.95979 * 80.37861 * 26 17 16 46 46 H 1.07991 * 120.40034 * 359.97438 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2137 1.2131 0.0000 4 6 3.5639 1.2185 0.0080 5 7 4.2635 0.0460 0.0041 6 6 5.5964 -0.2364 -0.0022 7 7 5.7744 -1.5259 -0.0032 8 6 4.5789 -2.1508 0.0018 9 6 4.3525 -3.5961 0.0020 10 8 3.2164 -4.0344 0.0064 11 7 5.4013 -4.4424 -0.0026 12 6 6.8711 -4.2858 -0.0081 13 6 6.9076 -5.6750 0.6706 14 1 7.7096 -6.3260 0.3227 15 6 6.8527 -5.5382 2.1937 16 6 6.0300 -6.6889 2.7795 17 7 4.6862 -6.6281 2.1964 18 6 3.5921 -6.5219 3.0131 19 1 3.6933 -6.0906 3.9980 20 6 2.3530 -6.9685 2.5749 21 7 2.2707 -7.7485 1.5179 22 14 0.8024 -6.4625 3.4853 23 1 1.1636 -5.5888 4.6306 24 1 -0.0945 -5.7220 2.5620 25 1 0.1052 -7.6739 3.9870 26 6 4.5254 -6.7138 0.7546 27 6 5.5601 -5.9215 -0.0035 28 1 5.6818 -6.3087 -1.0152 29 6 3.5949 -1.1529 0.0008 30 6 2.1933 -1.1780 0.0005 31 1 -0.3633 0.0003 1.0277 32 1 -0.3633 0.8898 -0.5141 33 1 -0.3632 -0.8902 -0.5135 34 1 1.6735 2.1485 0.0004 35 1 4.0953 2.1587 0.0061 36 1 6.3869 0.4994 -0.0051 37 1 7.2298 -3.4759 0.6271 38 1 7.3086 -4.2720 -1.0063 39 1 6.3874 -4.5881 2.4567 40 1 7.8642 -5.5718 2.5983 41 1 6.4977 -7.6409 2.5288 42 1 5.9669 -6.5825 3.8624 43 1 1.4048 -8.0608 1.2120 44 1 3.5374 -6.3255 0.5077 45 1 4.5789 -7.7547 0.4355 46 1 1.6635 -2.1191 0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084468457.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:57 Heat of formation + Delta-G solvation = 122.538103 kcal Electronic energy + Delta-G solvation = -30466.492485 eV Core-core repulsion = 26552.612453 eV Total energy + Delta-G solvation = -3913.880031 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.81021 -39.95970 -37.94940 -37.17811 -35.02490 -34.01943 -31.99133 -31.23189 -30.05976 -29.90252 -28.76104 -26.93554 -26.44180 -23.93718 -23.72722 -23.08945 -22.28022 -21.74836 -20.81571 -19.53110 -18.24358 -17.45384 -16.67245 -16.45106 -16.05114 -15.83199 -15.45918 -15.39322 -14.91608 -14.47614 -14.28461 -14.00122 -13.69134 -13.58075 -13.25053 -13.06668 -12.85883 -12.66163 -12.51197 -12.16802 -12.13945 -11.75925 -11.67343 -11.66312 -11.31394 -10.95621 -10.60971 -10.57699 -10.39643 -10.35045 -10.31527 -10.05818 -9.72313 -9.69351 -9.49580 -9.43189 -8.85780 -8.21884 -7.91129 -7.43281 -6.51535 -5.56981 -2.97191 0.59976 1.04159 2.43441 2.58420 3.19515 3.48883 3.51929 3.59048 3.60434 4.11780 4.21591 4.40782 4.53671 4.57163 4.68043 4.76143 4.96055 4.97893 5.17010 5.30186 5.44708 5.45692 5.47797 5.59800 5.62121 5.65784 5.71889 5.85279 5.91131 5.92122 5.99861 6.11507 6.23165 6.28390 6.29774 6.43022 6.48464 6.55039 6.58231 6.69964 6.75212 6.93022 7.05113 7.14855 7.60418 7.70821 7.88383 8.04192 8.53032 8.66955 8.99344 9.45079 10.09246 10.58233 11.51277 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010201 B = 0.004878 C = 0.003598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2744.043665 B = 5738.394140 C = 7779.783540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.092 4.092 3 C -0.127 4.127 4 C 0.046 3.954 5 N -0.369 5.369 6 C 0.133 3.867 7 N -0.416 5.416 8 C -0.040 4.040 9 C 0.620 3.380 10 O -0.526 6.526 11 N -0.618 5.618 12 C 0.112 3.888 13 C -0.114 4.114 14 H 0.083 0.917 15 C -0.115 4.115 16 C 0.145 3.855 17 N -0.583 5.583 18 C -0.247 4.247 19 H 0.063 0.937 20 C 0.009 3.991 21 N -0.904 5.904 22 Si 0.899 3.101 23 H -0.281 1.281 24 H -0.289 1.289 25 H -0.293 1.293 26 C 0.165 3.835 27 C 0.128 3.872 28 H 0.073 0.927 29 C 0.074 3.926 30 C -0.064 4.064 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.148 0.852 35 H 0.167 0.833 36 H 0.213 0.787 37 H 0.083 0.917 38 H 0.071 0.929 39 H 0.060 0.940 40 H 0.052 0.948 41 H 0.019 0.981 42 H 0.054 0.946 43 H 0.251 0.749 44 H 0.107 0.893 45 H 0.031 0.969 46 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.085 19.094 -5.754 20.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.095 4.095 3 C -0.148 4.148 4 C -0.075 4.075 5 N -0.040 5.040 6 C -0.143 4.143 7 N -0.131 5.131 8 C -0.175 4.175 9 C 0.409 3.591 10 O -0.402 6.402 11 N -0.353 5.353 12 C -0.012 4.012 13 C -0.134 4.134 14 H 0.101 0.899 15 C -0.154 4.154 16 C 0.018 3.982 17 N -0.305 5.305 18 C -0.376 4.376 19 H 0.081 0.919 20 C -0.189 4.189 21 N -0.549 5.549 22 Si 0.730 3.270 23 H -0.206 1.206 24 H -0.215 1.215 25 H -0.220 1.220 26 C 0.039 3.961 27 C 0.025 3.975 28 H 0.091 0.909 29 C -0.038 4.038 30 C -0.083 4.083 31 H 0.094 0.906 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.166 0.834 35 H 0.184 0.816 36 H 0.230 0.770 37 H 0.102 0.898 38 H 0.089 0.911 39 H 0.079 0.921 40 H 0.071 0.929 41 H 0.037 0.963 42 H 0.073 0.927 43 H 0.061 0.939 44 H 0.125 0.875 45 H 0.049 0.951 46 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 6.041 18.583 -5.823 20.390 hybrid contribution -1.340 1.017 0.289 1.707 sum 4.702 19.600 -5.534 20.902 Atomic orbital electron populations 1.20761 0.89801 1.03255 1.02928 1.19913 0.97182 0.92095 1.00308 1.20780 0.92319 0.99220 1.02464 1.21579 0.93009 0.88507 1.04399 1.42977 1.08547 1.06288 1.46203 1.24985 0.82376 0.94294 1.12609 1.70108 1.25935 1.03785 1.13243 1.20750 0.87175 0.93930 1.15643 1.15979 0.83843 0.82247 0.77054 1.90877 1.21289 1.77064 1.50954 1.49984 1.05410 1.07850 1.72062 1.23432 0.80416 0.97759 0.99568 1.22870 0.97241 0.96231 0.97011 0.89866 1.21828 0.99147 1.01554 0.92873 1.20775 0.86980 0.94037 0.96430 1.43435 1.00679 1.85168 1.01222 1.19132 0.86782 1.33339 0.98379 0.91875 1.24888 0.98227 0.97568 0.98229 1.70013 1.23183 1.35045 1.26680 0.86262 0.84102 0.77683 0.78937 1.20599 1.21531 1.22006 1.20030 0.98055 0.95346 0.82703 1.23079 0.95491 0.80167 0.98729 0.90924 1.19263 0.93228 0.85042 1.06271 1.20756 0.89879 1.00160 0.97523 0.90609 0.91297 0.90750 0.83398 0.81580 0.77015 0.89848 0.91119 0.92075 0.92922 0.96293 0.92739 0.93912 0.87487 0.95143 0.82200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.02 10.03 36.01 0.36 -0.66 16 2 C -0.09 -1.07 5.89 -104.50 -0.62 -1.69 16 3 C -0.13 -1.12 9.67 -39.91 -0.39 -1.51 16 4 C 0.05 0.42 10.95 -16.59 -0.18 0.23 16 5 N -0.37 -4.75 2.94 -62.19 -0.18 -4.93 16 6 C 0.13 1.65 12.73 -89.53 -1.14 0.51 16 7 N -0.42 -6.79 9.61 -10.53 -0.10 -6.89 16 8 C -0.04 -0.77 7.01 -82.57 -0.58 -1.35 16 9 C 0.62 14.05 7.96 -13.03 -0.10 13.94 16 10 O -0.53 -13.81 15.03 5.12 0.08 -13.74 16 11 N -0.62 -12.79 3.40 -173.09 -0.59 -13.38 16 12 C 0.11 1.82 7.28 -2.56 -0.02 1.80 16 13 C -0.11 -1.95 4.34 -89.96 -0.39 -2.35 16 14 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 15 C -0.11 -2.10 5.66 -26.67 -0.15 -2.25 16 16 C 0.14 3.16 6.44 -3.93 -0.03 3.13 16 17 N -0.58 -15.53 3.00 -175.36 -0.53 -16.06 16 18 C -0.25 -7.28 9.56 -15.06 -0.14 -7.43 16 19 H 0.06 1.85 7.84 -52.49 -0.41 1.44 16 20 C 0.01 0.27 4.96 -17.43 -0.09 0.18 16 21 N -0.90 -27.96 10.92 55.49 0.61 -27.36 16 22 Si 0.90 23.69 29.58 -169.99 -5.03 18.67 16 23 H -0.28 -7.23 7.11 56.52 0.40 -6.83 16 24 H -0.29 -7.71 7.11 56.52 0.40 -7.31 16 25 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16 26 C 0.17 4.28 4.68 -5.79 -0.03 4.25 16 27 C 0.13 2.67 4.30 -68.07 -0.29 2.38 16 28 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 29 C 0.07 1.25 6.72 -83.98 -0.56 0.68 16 30 C -0.06 -1.00 9.38 -39.54 -0.37 -1.37 16 31 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.47 8.10 -51.93 -0.42 0.05 16 33 H 0.07 0.72 8.08 -51.93 -0.42 0.30 16 34 H 0.15 0.78 8.06 -52.48 -0.42 0.36 16 35 H 0.17 0.76 8.06 -52.49 -0.42 0.34 16 36 H 0.21 1.56 8.06 -52.49 -0.42 1.13 16 37 H 0.08 1.34 7.28 -51.93 -0.38 0.96 16 38 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.06 1.26 7.69 -51.93 -0.40 0.86 16 40 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.05 1.17 7.88 -51.93 -0.41 0.76 16 43 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 44 H 0.11 3.24 4.89 -51.93 -0.25 2.99 16 45 H 0.03 0.84 8.03 -51.93 -0.42 0.42 16 46 H 0.16 2.84 7.17 -52.49 -0.38 2.46 16 LS Contribution 371.68 15.07 5.60 5.60 Total: -1.00 -37.44 371.68 -11.28 -48.73 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -6.43 Total: 0.85 kcal Atomic # 6 Polarization: 13.23 SS G_CDS: -4.72 Total: 8.52 kcal Atomic # 7 Polarization: -67.83 SS G_CDS: -0.79 Total: -68.62 kcal Atomic # 8 Polarization: -13.81 SS G_CDS: 0.08 Total: -13.74 kcal Atomic # 14 Polarization: 23.69 SS G_CDS: -5.03 Total: 18.67 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -37.44 -11.28 -48.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084468457.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.264 kcal (2) G-P(sol) polarization free energy of solvation -37.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds