Wall clock time and date at job start Sat Apr 11 2020 06:05:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.40573 * 120.13174 * 2 1 4 4 C 1.34850 * 120.33750 * 180.02562 * 3 2 1 5 5 N 1.36673 * 120.64193 * 0.02589 * 4 3 2 6 6 C 1.36196 * 132.29661 * 179.97438 * 5 4 3 7 7 C 1.36575 * 107.09773 * 180.02562 * 6 5 4 8 8 C 1.47590 * 125.91978 * 179.97438 * 7 6 5 9 9 O 1.21587 * 119.99970 * 0.02562 * 8 7 6 10 10 N 1.34773 * 120.00050 * 179.97438 * 8 7 6 11 11 C 1.49835 * 135.06922 * 359.97438 * 10 8 7 12 12 C 1.54643 * 85.10278 * 153.82030 * 11 10 8 13 13 H 1.09004 * 114.44220 * 140.13969 * 12 11 10 14 14 C 1.53010 * 110.83885 * 269.94272 * 12 11 10 15 15 C 1.53108 * 109.44958 * 143.89234 * 14 12 11 16 16 N 1.46620 * 108.00507 * 301.02579 * 15 14 12 17 17 C 1.36935 * 119.88610 * 237.29996 * 16 15 14 18 18 H 1.08001 * 120.00427 * 24.92641 * 17 16 15 19 19 C 1.38820 * 120.00065 * 204.92548 * 17 16 15 20 20 N 1.31621 * 119.99417 * 14.68619 * 19 17 16 21 21 Si 1.86796 * 120.00198 * 194.68277 * 19 17 16 22 22 H 1.48499 * 109.46963 * 0.02562 * 21 19 17 23 23 H 1.48496 * 109.46893 * 120.00125 * 21 19 17 24 24 H 1.48495 * 109.47092 * 240.00115 * 21 19 17 25 25 C 1.44668 * 119.87260 * 58.21042 * 16 15 14 26 26 C 1.46818 * 135.01385 * 179.97438 * 10 8 7 27 27 H 1.08997 * 111.56203 * 94.43974 * 26 10 8 28 28 N 1.34584 * 108.16207 * 0.22602 * 7 6 5 29 29 C 1.32229 * 109.02172 * 359.62496 * 28 7 6 30 30 C 1.35887 * 120.13165 * 180.02562 * 2 1 3 31 31 H 1.08999 * 109.47028 * 269.98316 * 1 2 3 32 32 H 1.08998 * 109.46914 * 29.97779 * 1 2 3 33 33 H 1.08992 * 109.47267 * 149.98019 * 1 2 3 34 34 H 1.08000 * 119.83215 * 0.02562 * 3 2 1 35 35 H 1.08008 * 119.67697 * 180.02562 * 4 3 2 36 36 H 1.08008 * 126.45207 * 0.04163 * 6 5 4 37 37 H 1.09004 * 114.36454 * 39.85111 * 11 10 8 38 38 H 1.08999 * 113.84130 * 267.73307 * 11 10 8 39 39 H 1.08995 * 109.47746 * 23.90280 * 14 12 11 40 40 H 1.09002 * 109.48093 * 263.88899 * 14 12 11 41 41 H 1.09000 * 109.74873 * 60.64841 * 15 14 12 42 42 H 1.08998 * 109.75598 * 181.39756 * 15 14 12 43 43 H 0.97004 * 119.99849 * 180.02562 * 20 19 17 44 44 H 1.09000 * 108.46613 * 198.90821 * 25 16 15 45 45 H 1.08997 * 108.82101 * 80.97009 * 25 16 15 46 46 H 1.07997 * 120.33166 * 359.97438 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2127 1.2158 0.0000 4 6 3.5612 1.2206 -0.0005 5 7 4.2620 0.0472 -0.0016 6 6 5.5969 -0.2231 -0.0027 7 6 5.7313 -1.5822 -0.0040 8 6 7.0060 -2.3262 -0.0061 9 8 8.0618 -1.7232 -0.0063 10 7 6.9996 -3.6739 -0.0067 11 6 5.9364 -4.7297 -0.0053 12 6 7.0032 -5.6175 -0.6874 13 1 7.0156 -6.6520 -0.3441 14 6 6.9308 -5.4828 -2.2098 15 6 8.3440 -5.5498 -2.7952 16 7 9.1303 -4.4611 -2.2068 17 6 9.7271 -3.5342 -3.0191 18 1 9.3265 -3.3409 -4.0033 19 6 10.8471 -2.8429 -2.5776 20 7 11.5070 -3.2660 -1.5204 21 14 11.4174 -1.3124 -3.4840 22 1 10.5107 -1.0492 -4.6302 23 1 11.3941 -0.1515 -2.5583 24 1 12.8004 -1.5195 -3.9836 25 6 9.2892 -4.3814 -0.7711 26 6 8.0326 -4.7172 -0.0090 27 1 8.2605 -5.0575 1.0010 28 7 4.5000 -2.1256 -0.0087 29 6 3.6011 -1.1559 -0.0022 30 6 2.1892 -1.1753 -0.0005 31 1 -0.3633 -0.0003 1.0277 32 1 -0.3633 0.8902 -0.5135 33 1 -0.3633 -0.8897 -0.5141 34 1 1.6721 2.1508 0.0004 35 1 4.0926 2.1609 -0.0001 36 1 6.3983 0.5010 -0.0024 37 1 5.0790 -4.5053 -0.6399 38 1 5.6534 -5.0686 0.9913 39 1 6.4752 -4.5272 -2.4689 40 1 6.3294 -6.2949 -2.6184 41 1 8.7999 -6.5086 -2.5484 42 1 8.3005 -5.4295 -3.8777 43 1 12.2894 -2.7828 -1.2116 44 1 9.5942 -3.3672 -0.5133 45 1 10.0778 -5.0692 -0.4659 46 1 1.6568 -2.1149 -0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084493141.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:01 Heat of formation + Delta-G solvation = 126.679491 kcal Electronic energy + Delta-G solvation = -29991.943952 eV Core-core repulsion = 26078.243504 eV Total energy + Delta-G solvation = -3913.700447 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.88145 -40.06815 -38.13000 -37.05960 -35.07176 -34.36928 -32.01327 -30.93487 -30.24819 -30.03727 -28.78178 -27.09747 -26.75169 -24.22397 -23.73357 -23.07159 -22.08082 -21.85506 -20.80810 -19.49671 -18.23792 -17.56622 -16.96987 -16.62312 -16.12473 -15.80659 -15.46498 -15.23350 -15.03229 -14.71321 -14.18541 -14.01483 -13.87250 -13.62183 -13.31940 -13.11120 -12.99044 -12.85633 -12.54426 -12.40881 -12.13701 -11.91363 -11.75499 -11.65341 -11.34821 -10.99374 -10.86566 -10.61818 -10.57541 -10.32973 -10.28641 -10.06489 -9.76468 -9.71437 -9.55333 -8.93461 -8.90424 -8.22379 -8.00403 -7.87450 -6.51349 -5.57690 -2.98863 0.47535 1.07449 2.27162 2.38451 3.22989 3.41274 3.51667 3.58873 3.60288 3.93215 4.01319 4.20704 4.45840 4.50823 4.67257 4.79050 4.89904 4.93627 5.10399 5.19302 5.28690 5.34017 5.41513 5.46495 5.58225 5.59069 5.63673 5.68727 5.80786 5.88757 5.97055 6.00487 6.10845 6.20807 6.24909 6.27631 6.41449 6.53013 6.57203 6.66269 6.72343 6.89277 6.91747 7.13172 7.60241 7.68797 7.87537 8.03832 8.41561 8.66476 8.89048 9.45139 10.09165 10.57037 11.50138 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013649 B = 0.003561 C = 0.003088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2050.923294 B = 7862.071938 C = 9066.543606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.075 4.075 3 C -0.142 4.142 4 C 0.063 3.937 5 N -0.368 5.368 6 C -0.026 4.026 7 C 0.028 3.972 8 C 0.614 3.386 9 O -0.516 6.516 10 N -0.615 5.615 11 C 0.112 3.888 12 C -0.114 4.114 13 H 0.084 0.916 14 C -0.115 4.115 15 C 0.145 3.855 16 N -0.583 5.583 17 C -0.250 4.250 18 H 0.063 0.937 19 C 0.009 3.991 20 N -0.903 5.903 21 Si 0.901 3.099 22 H -0.281 1.281 23 H -0.289 1.289 24 H -0.292 1.292 25 C 0.164 3.836 26 C 0.127 3.873 27 H 0.073 0.927 28 N -0.460 5.460 29 C 0.222 3.778 30 C -0.079 4.079 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.150 0.850 35 H 0.165 0.835 36 H 0.195 0.805 37 H 0.086 0.914 38 H 0.074 0.926 39 H 0.061 0.939 40 H 0.053 0.947 41 H 0.020 0.980 42 H 0.055 0.945 43 H 0.251 0.749 44 H 0.108 0.892 45 H 0.028 0.972 46 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.321 4.628 5.768 24.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.081 4.081 3 C -0.162 4.162 4 C -0.058 4.058 5 N -0.041 5.041 6 C -0.160 4.160 7 C -0.105 4.105 8 C 0.400 3.600 9 O -0.391 6.391 10 N -0.350 5.350 11 C -0.011 4.011 12 C -0.133 4.133 13 H 0.103 0.897 14 C -0.155 4.155 15 C 0.019 3.981 16 N -0.305 5.305 17 C -0.379 4.379 18 H 0.081 0.919 19 C -0.189 4.189 20 N -0.548 5.548 21 Si 0.731 3.269 22 H -0.206 1.206 23 H -0.215 1.215 24 H -0.220 1.220 25 C 0.037 3.963 26 C 0.023 3.977 27 H 0.091 0.909 28 N -0.182 5.182 29 C -0.024 4.024 30 C -0.099 4.099 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.168 0.832 35 H 0.182 0.818 36 H 0.212 0.788 37 H 0.105 0.895 38 H 0.093 0.907 39 H 0.079 0.921 40 H 0.072 0.928 41 H 0.038 0.962 42 H 0.073 0.927 43 H 0.061 0.939 44 H 0.126 0.874 45 H 0.046 0.954 46 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -22.638 4.431 5.830 23.793 hybrid contribution 0.454 1.842 -0.253 1.914 sum -22.184 6.273 5.577 23.719 Atomic orbital electron populations 1.20751 0.89708 1.03361 1.02783 1.19717 0.96956 0.92033 0.99394 1.20696 0.92046 0.99256 1.04250 1.21652 0.93027 0.88801 1.02341 1.42756 1.07225 1.07742 1.46385 1.22654 0.83284 0.98154 1.11898 1.20908 0.92720 0.90866 1.05959 1.16374 0.85743 0.80417 0.77433 1.90881 1.30676 1.67404 1.50181 1.50037 1.10885 1.02596 1.71459 1.23847 0.92944 0.84490 0.99791 1.22860 0.95793 0.97686 0.97011 0.89749 1.21835 0.99978 1.00810 0.92855 1.20772 0.89665 0.91276 0.96420 1.43250 1.58539 1.27455 1.01240 1.19130 1.05992 1.14177 0.98600 0.91911 1.24916 0.95917 0.99872 0.98210 1.70021 1.19071 1.39163 1.26534 0.86246 0.77786 0.83947 0.78901 1.20576 1.21538 1.21977 1.19961 0.89177 1.04278 0.82840 1.22749 0.92902 0.83258 0.98755 0.90910 1.70908 0.98014 1.28510 1.20749 1.21002 0.94399 0.80358 1.06591 1.20108 0.88001 0.99560 1.02199 0.90668 0.91079 0.90960 0.83250 0.81792 0.78814 0.89519 0.90745 0.92070 0.92847 0.96236 0.92688 0.93896 0.87409 0.95406 0.83234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.52 10.02 36.01 0.36 -0.16 16 2 C -0.08 -0.59 5.88 -104.58 -0.62 -1.21 16 3 C -0.14 -1.02 9.67 -39.90 -0.39 -1.41 16 4 C 0.06 0.57 10.93 -16.60 -0.18 0.39 16 5 N -0.37 -4.92 2.93 -62.37 -0.18 -5.10 16 6 C -0.03 -0.41 11.47 -16.21 -0.19 -0.60 16 7 C 0.03 0.54 6.91 -83.45 -0.58 -0.04 16 8 C 0.61 13.68 7.98 -12.45 -0.10 13.58 16 9 O -0.52 -13.53 15.93 5.29 0.08 -13.45 16 10 N -0.61 -12.56 3.39 -172.52 -0.59 -13.15 16 11 C 0.11 1.79 7.39 -1.43 -0.01 1.78 16 12 C -0.11 -1.93 4.34 -89.98 -0.39 -2.32 16 13 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 14 C -0.12 -2.09 5.66 -26.67 -0.15 -2.25 16 15 C 0.15 3.16 6.45 -3.92 -0.03 3.13 16 16 N -0.58 -15.50 2.99 -175.87 -0.53 -16.03 16 17 C -0.25 -7.35 9.55 -15.06 -0.14 -7.50 16 18 H 0.06 1.83 7.84 -52.49 -0.41 1.42 16 19 C 0.01 0.28 4.96 -17.43 -0.09 0.19 16 20 N -0.90 -28.02 10.91 55.49 0.61 -27.41 16 21 Si 0.90 23.76 29.58 -169.99 -5.03 18.73 16 22 H -0.28 -7.21 7.11 56.52 0.40 -6.81 16 23 H -0.29 -7.76 7.11 56.52 0.40 -7.36 16 24 H -0.29 -7.60 7.11 56.52 0.40 -7.20 16 25 C 0.16 4.25 4.55 -6.15 -0.03 4.23 16 26 C 0.13 2.61 4.27 -69.17 -0.30 2.32 16 27 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 28 N -0.46 -7.84 9.76 -9.35 -0.09 -7.94 16 29 C 0.22 3.17 7.80 -156.04 -1.22 1.95 16 30 C -0.08 -0.82 9.75 -39.30 -0.38 -1.20 16 31 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.07 0.25 8.09 -51.93 -0.42 -0.17 16 33 H 0.07 0.31 8.08 -51.93 -0.42 -0.11 16 34 H 0.15 0.59 8.06 -52.49 -0.42 0.16 16 35 H 0.16 0.99 8.06 -52.48 -0.42 0.56 16 36 H 0.19 2.79 8.06 -52.48 -0.42 2.37 16 37 H 0.09 1.38 7.34 -51.93 -0.38 1.00 16 38 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.06 1.25 7.70 -51.93 -0.40 0.85 16 40 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.05 1.18 7.88 -51.93 -0.41 0.77 16 43 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 44 H 0.11 3.26 4.71 -51.93 -0.24 3.01 16 45 H 0.03 0.77 7.99 -51.93 -0.41 0.36 16 46 H 0.15 1.29 8.06 -52.49 -0.42 0.86 16 LS Contribution 373.41 15.07 5.63 5.63 Total: -1.00 -37.32 373.41 -10.97 -48.30 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -6.46 Total: -0.48 kcal Atomic # 6 Polarization: 15.31 SS G_CDS: -4.41 Total: 10.90 kcal Atomic # 7 Polarization: -68.84 SS G_CDS: -0.78 Total: -69.62 kcal Atomic # 8 Polarization: -13.53 SS G_CDS: 0.08 Total: -13.45 kcal Atomic # 14 Polarization: 23.76 SS G_CDS: -5.03 Total: 18.73 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -37.32 -10.97 -48.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084493141.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.977 kcal (2) G-P(sol) polarization free energy of solvation -37.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds