Wall clock time and date at job start Sat Apr 11 2020 06:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30180 * 125.09135 * 2 1 4 4 C 1.34889 * 109.73547 * 180.17254 * 3 2 1 5 5 C 1.46286 * 126.49824 * 179.81850 * 4 3 2 6 6 O 1.21775 * 119.99730 * 179.68959 * 5 4 3 7 7 N 1.34772 * 120.00068 * 359.68956 * 5 4 3 8 8 C 1.47287 * 136.54232 * 359.62622 * 7 5 4 9 9 C 1.54393 * 87.48996 * 151.45968 * 8 7 5 10 10 H 1.08999 * 114.91498 * 141.76151 * 9 8 7 11 11 C 1.53062 * 111.60727 * 274.19025 * 9 8 7 12 12 C 1.53157 * 109.21039 * 142.38673 * 11 9 8 13 13 N 1.46536 * 108.24523 * 301.58018 * 12 11 9 14 14 C 1.36940 * 119.73959 * 236.44015 * 13 12 11 15 15 H 1.07997 * 119.99767 * 150.86173 * 14 13 12 16 16 C 1.38810 * 119.99706 * 330.87121 * 14 13 12 17 17 N 1.31618 * 119.99887 * 158.23068 * 16 14 13 18 18 Si 1.86797 * 120.00315 * 338.22202 * 16 14 13 19 19 H 1.48501 * 109.46863 * 94.80630 * 18 16 14 20 20 H 1.48504 * 109.47473 * 214.80861 * 18 16 14 21 21 H 1.48497 * 109.47144 * 334.80918 * 18 16 14 22 22 C 1.45698 * 120.52451 * 56.42512 * 13 12 11 23 23 C 1.46464 * 136.54152 * 180.02562 * 7 5 4 24 24 H 1.09003 * 111.44391 * 96.35880 * 23 7 5 25 25 C 1.40145 * 107.00206 * 359.55937 * 4 3 2 26 26 C 1.40186 * 133.57884 * 180.28614 * 25 4 3 27 27 C 1.36329 * 119.19981 * 179.97438 * 26 25 4 28 28 C 1.40389 * 119.56110 * 0.02562 * 27 26 25 29 29 C 1.35030 * 120.44162 * 359.97438 * 28 27 26 30 30 N 1.36244 * 125.08739 * 179.67406 * 2 1 3 31 31 H 1.08996 * 109.47196 * 270.32483 * 1 2 3 32 32 H 1.09004 * 109.46612 * 30.32042 * 1 2 3 33 33 H 1.08995 * 109.46869 * 150.31735 * 1 2 3 34 34 H 1.09008 * 113.53222 * 266.07931 * 8 7 5 35 35 H 1.09001 * 113.52556 * 36.70738 * 8 7 5 36 36 H 1.09001 * 109.51388 * 262.30418 * 11 9 8 37 37 H 1.08998 * 109.51623 * 22.47121 * 11 9 8 38 38 H 1.08994 * 109.70602 * 61.27049 * 12 11 9 39 39 H 1.08996 * 109.70872 * 181.85190 * 12 11 9 40 40 H 0.97000 * 120.00503 * 180.02562 * 17 16 14 41 41 H 1.08998 * 108.79173 * 199.11559 * 22 13 12 42 42 H 1.09004 * 108.78925 * 80.90395 * 22 13 12 43 43 H 1.07999 * 120.39672 * 359.97438 * 26 25 4 44 44 H 1.08004 * 120.21483 * 179.97438 * 27 26 25 45 45 H 1.07998 * 119.77754 * 180.02562 * 28 27 26 46 46 H 1.08001 * 119.69799 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2554 1.0652 0.0000 4 6 3.5562 0.7080 -0.0038 5 6 4.7066 1.6115 -0.0088 6 8 5.8368 1.1582 -0.0062 7 7 4.5156 2.9456 -0.0163 8 6 3.3613 3.8604 -0.0280 9 6 4.2511 4.8838 0.7099 10 1 4.1113 5.9200 0.4021 11 6 4.2256 4.6641 2.2245 12 6 5.6228 4.9248 2.7951 13 7 6.5644 4.0157 2.1361 14 6 7.3318 3.1688 2.8905 15 1 7.6523 2.2220 2.4816 16 6 7.6975 3.5271 4.1807 17 7 8.0448 2.5999 5.0478 18 14 7.6970 5.3254 4.6863 19 1 6.4036 5.6563 5.3365 20 1 8.8080 5.5717 5.6403 21 1 7.8789 6.1777 3.4839 22 6 6.6905 4.0056 0.6846 23 6 5.3622 4.1408 -0.0234 24 1 5.5005 4.5252 -1.0339 25 6 3.5965 -0.6929 0.0040 26 6 4.6394 -1.6296 0.0097 27 6 4.3389 -2.9594 0.0174 28 6 2.9952 -3.3658 0.0190 29 6 2.0033 -2.4496 0.0134 30 7 2.2902 -1.1148 0.0063 31 1 -0.3633 0.0058 1.0276 32 1 -0.3633 0.8872 -0.5188 33 1 -0.3633 -0.8928 -0.5089 34 1 3.0691 4.1796 -1.0285 35 1 2.5188 3.5054 0.5655 36 1 3.5123 5.3510 2.6801 37 1 3.9308 3.6368 2.4385 38 1 5.9122 5.9576 2.6013 39 1 5.6218 4.7387 3.8691 40 1 8.3000 2.8501 5.9495 41 1 7.1572 3.0692 0.3792 42 1 7.3348 4.8312 0.3824 43 1 5.6684 -1.3018 0.0079 44 1 5.1295 -3.6952 0.0215 45 1 2.7532 -4.4183 0.0256 46 1 0.9737 -2.7757 0.0151 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084517684.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:05 Heat of formation + Delta-G solvation = 131.963840 kcal Electronic energy + Delta-G solvation = -30391.249857 eV Core-core repulsion = 26477.778557 eV Total energy + Delta-G solvation = -3913.471301 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.82 seconds Orbital eigenvalues (eV) -42.92250 -40.48689 -37.81508 -37.35443 -35.40918 -33.61916 -31.82491 -31.69710 -30.97546 -30.38289 -29.14124 -27.15263 -26.67169 -24.06435 -23.91973 -23.44973 -22.61748 -21.29495 -20.99761 -20.00430 -18.19804 -17.27260 -16.96362 -16.60617 -16.29054 -16.06229 -15.67305 -15.48994 -15.20860 -14.98735 -14.55471 -13.88581 -13.59800 -13.46935 -13.44723 -13.36565 -13.17971 -12.86285 -12.59461 -12.37194 -12.29541 -12.11958 -11.80478 -11.78725 -11.70040 -11.25122 -10.94551 -10.78155 -10.68275 -10.61288 -10.45206 -10.11683 -9.80105 -9.54895 -9.46687 -9.33286 -9.16376 -8.50317 -8.13901 -7.49304 -6.76759 -5.78744 -3.13037 0.56161 0.98601 2.33229 2.42469 3.17835 3.29050 3.42160 3.57792 3.62376 3.92680 4.12660 4.20789 4.46468 4.63963 4.66525 4.67611 4.72727 4.90780 5.02835 5.10694 5.13852 5.24135 5.25296 5.40604 5.45252 5.57467 5.59435 5.64497 5.70022 5.79104 5.88219 5.93397 5.95479 6.11761 6.13353 6.13791 6.31391 6.39658 6.43023 6.48304 6.53177 6.74740 6.80228 6.94512 6.98910 7.10735 7.64846 8.19151 8.28832 8.55041 8.75596 9.16688 9.90983 10.25280 11.37639 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013843 B = 0.003854 C = 0.003412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.260801 B = 7263.578329 C = 8203.815812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.158 3.842 3 N -0.411 5.411 4 C -0.040 4.040 5 C 0.635 3.365 6 O -0.531 6.531 7 N -0.618 5.618 8 C 0.109 3.891 9 C -0.116 4.116 10 H 0.093 0.907 11 C -0.114 4.114 12 C 0.130 3.870 13 N -0.596 5.596 14 C -0.248 4.248 15 H 0.085 0.915 16 C 0.021 3.979 17 N -0.910 5.910 18 Si 0.879 3.121 19 H -0.291 1.291 20 H -0.305 1.305 21 H -0.270 1.270 22 C 0.144 3.856 23 C 0.128 3.872 24 H 0.079 0.921 25 C 0.072 3.928 26 C -0.058 4.058 27 C -0.123 4.123 28 C -0.128 4.128 29 C 0.042 3.958 30 N -0.362 5.362 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.057 0.943 37 H 0.067 0.933 38 H 0.025 0.975 39 H 0.073 0.927 40 H 0.260 0.740 41 H 0.079 0.921 42 H 0.023 0.977 43 H 0.162 0.838 44 H 0.142 0.858 45 H 0.150 0.850 46 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.078 -7.412 -13.533 23.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.098 4.098 3 N -0.127 5.127 4 C -0.175 4.175 5 C 0.425 3.575 6 O -0.408 6.408 7 N -0.352 5.352 8 C -0.015 4.015 9 C -0.135 4.135 10 H 0.112 0.888 11 C -0.153 4.153 12 C 0.004 3.996 13 N -0.319 5.319 14 C -0.377 4.377 15 H 0.102 0.898 16 C -0.177 4.177 17 N -0.554 5.554 18 Si 0.709 3.291 19 H -0.219 1.219 20 H -0.233 1.233 21 H -0.195 1.195 22 C 0.017 3.983 23 C 0.024 3.976 24 H 0.097 0.903 25 C -0.040 4.040 26 C -0.078 4.078 27 C -0.144 4.144 28 C -0.149 4.149 29 C -0.079 4.079 30 N -0.033 5.033 31 H 0.099 0.901 32 H 0.111 0.889 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.103 0.897 36 H 0.076 0.924 37 H 0.086 0.914 38 H 0.043 0.957 39 H 0.091 0.909 40 H 0.069 0.931 41 H 0.097 0.903 42 H 0.041 0.959 43 H 0.179 0.821 44 H 0.159 0.841 45 H 0.167 0.833 46 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -17.784 -7.085 -13.391 23.362 hybrid contribution 0.150 0.048 0.414 0.443 sum -17.634 -7.037 -12.977 22.997 Atomic orbital electron populations 1.20144 0.84107 1.03974 1.03623 1.23321 0.95609 0.79028 1.11861 1.70053 1.01553 1.27180 1.13922 1.20523 0.91401 0.89479 1.16067 1.15749 0.86192 0.79203 0.76405 1.90831 1.23128 1.75358 1.51440 1.48992 1.11182 1.02734 1.72268 1.23305 0.91377 0.87148 0.99638 1.22860 0.96117 0.97802 0.96697 0.88843 1.21807 0.99264 1.01890 0.92356 1.21188 0.88207 0.92889 0.97326 1.43779 1.43054 1.44529 1.00510 1.18981 1.25534 0.97430 0.95732 0.89780 1.25274 0.99101 0.96992 0.96311 1.69876 1.49415 1.31868 1.04222 0.86962 0.76029 0.88296 0.77768 1.21853 1.23331 1.19519 1.20312 0.92330 1.01098 0.84531 1.22365 0.94592 0.82141 0.98522 0.90293 1.19257 0.83922 0.94309 1.06498 1.20905 0.99429 0.91204 0.96240 1.21208 0.96538 0.95959 1.00706 1.20895 0.92386 0.99845 1.01798 1.21589 1.01334 0.80372 1.04616 1.42809 1.07916 1.06428 1.46162 0.90133 0.88879 0.90996 0.90729 0.89722 0.92403 0.91400 0.95689 0.90921 0.93064 0.90302 0.95887 0.82073 0.84066 0.83281 0.81761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.46 10.32 36.01 0.37 -0.09 16 2 C 0.16 2.04 7.94 -154.57 -1.23 0.82 16 3 N -0.41 -6.64 9.72 -6.74 -0.07 -6.70 16 4 C -0.04 -0.73 7.03 -82.57 -0.58 -1.31 16 5 C 0.63 13.31 7.96 -13.03 -0.10 13.21 16 6 O -0.53 -12.64 14.99 5.12 0.08 -12.56 16 7 N -0.62 -11.62 3.33 -189.15 -0.63 -12.24 16 8 C 0.11 1.62 7.18 -11.37 -0.08 1.53 16 9 C -0.12 -1.82 4.57 -90.13 -0.41 -2.23 16 10 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 11 C -0.11 -2.13 5.71 -26.62 -0.15 -2.28 16 12 C 0.13 2.97 4.17 -3.94 -0.02 2.95 16 13 N -0.60 -15.25 2.76 -174.89 -0.48 -15.73 16 14 C -0.25 -7.50 9.93 -15.06 -0.15 -7.65 16 15 H 0.08 2.82 8.01 -52.49 -0.42 2.40 16 16 C 0.02 0.65 5.17 -17.43 -0.09 0.55 16 17 N -0.91 -29.41 13.97 55.49 0.78 -28.63 16 18 Si 0.88 23.28 24.42 -169.99 -4.15 19.13 16 19 H -0.29 -7.41 6.70 56.52 0.38 -7.03 16 20 H -0.30 -8.20 7.11 56.52 0.40 -7.80 16 21 H -0.27 -6.98 6.74 56.52 0.38 -6.60 16 22 C 0.14 3.19 6.15 -5.42 -0.03 3.16 16 23 C 0.13 2.30 4.03 -77.66 -0.31 1.98 16 24 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 25 C 0.07 1.18 6.72 -83.98 -0.56 0.61 16 26 C -0.06 -0.85 9.73 -39.54 -0.38 -1.23 16 27 C -0.12 -1.29 10.08 -39.46 -0.40 -1.69 16 28 C -0.13 -1.06 9.98 -39.91 -0.40 -1.46 16 29 C 0.04 0.38 10.77 -16.60 -0.18 0.20 16 30 N -0.36 -4.69 2.94 -57.93 -0.17 -4.86 16 31 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.36 7.98 -51.93 -0.41 -0.05 16 34 H 0.07 0.92 8.14 -51.92 -0.42 0.50 16 35 H 0.08 1.29 7.35 -51.93 -0.38 0.91 16 36 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.07 1.45 7.69 -51.93 -0.40 1.05 16 38 H 0.03 0.55 7.25 -51.93 -0.38 0.17 16 39 H 0.07 1.84 4.53 -51.93 -0.24 1.60 16 40 H 0.26 7.93 8.31 -40.82 -0.34 7.59 16 41 H 0.08 1.95 6.46 -51.93 -0.34 1.61 16 42 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.16 2.56 7.17 -52.49 -0.38 2.19 16 44 H 0.14 1.12 8.06 -52.48 -0.42 0.69 16 45 H 0.15 0.68 8.06 -52.49 -0.42 0.26 16 46 H 0.17 0.80 7.94 -52.49 -0.42 0.38 16 LS Contribution 365.91 15.07 5.51 5.51 Total: -1.00 -38.51 365.91 -10.18 -48.69 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -6.34 Total: 0.34 kcal Atomic # 6 Polarization: 11.78 SS G_CDS: -4.71 Total: 7.07 kcal Atomic # 7 Polarization: -67.61 SS G_CDS: -0.57 Total: -68.18 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: 0.08 Total: -12.56 kcal Atomic # 14 Polarization: 23.28 SS G_CDS: -4.15 Total: 19.13 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -38.51 -10.18 -48.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084517684.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.652 kcal (2) G-P(sol) polarization free energy of solvation -38.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.82 seconds