Wall clock time and date at job start Sat Apr 11 2020 06:05:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35452 * 125.69266 * 2 1 4 4 N 1.36440 * 107.22000 * 180.02562 * 3 2 1 5 5 C 1.36717 * 132.26566 * 180.02562 * 4 3 2 6 6 C 1.34546 * 120.95900 * 179.69903 * 5 4 3 7 7 C 1.41779 * 120.14193 * 0.52730 * 6 5 4 8 8 C 1.47653 * 120.37243 * 179.75414 * 7 6 5 9 9 O 1.21580 * 119.99923 * 187.86241 * 8 7 6 10 10 N 1.34779 * 119.99707 * 7.59163 * 8 7 6 11 11 C 1.47292 * 136.54192 * 356.95719 * 10 8 7 12 12 C 1.54397 * 87.48398 * 151.46260 * 11 10 8 13 13 H 1.09001 * 114.91198 * 141.76709 * 12 11 10 14 14 C 1.53066 * 111.61189 * 274.18885 * 12 11 10 15 15 C 1.53145 * 109.21160 * 142.38907 * 14 12 11 16 16 N 1.46538 * 108.24737 * 301.58436 * 15 14 12 17 17 C 1.36942 * 119.73731 * 236.44336 * 16 15 14 18 18 H 1.07997 * 119.99992 * 34.62769 * 17 16 15 19 19 C 1.38813 * 119.99835 * 214.62581 * 17 16 15 20 20 N 1.31614 * 120.00271 * 355.57163 * 19 17 16 21 21 Si 1.86804 * 119.99875 * 175.57400 * 19 17 16 22 22 H 1.48502 * 109.46988 * 59.99965 * 21 19 17 23 23 H 1.48497 * 109.47262 * 179.97438 * 21 19 17 24 24 H 1.48493 * 109.47218 * 300.00093 * 21 19 17 25 25 C 1.44155 * 120.20484 * 56.39002 * 16 15 14 26 26 C 1.46464 * 136.54182 * 177.34193 * 10 8 7 27 27 H 1.08994 * 111.44309 * 96.35176 * 26 10 8 28 28 C 1.38443 * 119.25690 * 359.47974 * 7 6 5 29 29 C 1.37183 * 106.97179 * 359.97438 * 4 3 2 30 30 N 1.32652 * 108.06715 * 0.02562 * 29 4 3 31 31 H 1.09000 * 109.46718 * 90.00391 * 1 2 3 32 32 H 1.08995 * 109.47451 * 210.00718 * 1 2 3 33 33 H 1.09003 * 109.46781 * 330.00857 * 1 2 3 34 34 H 1.07993 * 126.38613 * 359.97438 * 3 2 1 35 35 H 1.08000 * 119.52520 * 359.96968 * 5 4 3 36 36 H 1.07996 * 119.93144 * 180.25835 * 6 5 4 37 37 H 1.08993 * 113.53399 * 266.07816 * 11 10 8 38 38 H 1.09005 * 113.52421 * 36.71736 * 11 10 8 39 39 H 1.08994 * 109.51877 * 262.31486 * 14 12 11 40 40 H 1.09001 * 109.51349 * 22.47122 * 14 12 11 41 41 H 1.09000 * 109.70721 * 61.27303 * 15 14 12 42 42 H 1.08998 * 109.70626 * 181.85313 * 15 14 12 43 43 H 0.96997 * 120.00146 * 179.97438 * 20 19 17 44 44 H 1.09001 * 107.86212 * 198.93407 * 25 16 15 45 45 H 1.08997 * 108.78805 * 81.24518 * 25 16 15 46 46 H 1.07998 * 120.45636 * 180.23067 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2972 1.1001 0.0000 4 7 3.5913 0.6678 -0.0006 5 6 4.7841 1.3360 -0.0004 6 6 5.9518 0.6678 0.0050 7 6 5.9608 -0.7499 -0.0008 8 6 7.2395 -1.4884 -0.0004 9 8 7.2446 -2.6950 -0.1493 10 7 8.4012 -0.8241 0.1595 11 6 8.8183 0.5813 0.3022 12 6 10.0221 0.0697 1.1225 13 1 10.9570 0.6020 0.9468 14 6 9.6629 -0.1084 2.5997 15 6 10.3670 -1.3552 3.1428 16 7 9.9412 -2.5073 2.3436 17 6 9.3708 -3.5886 2.9608 18 1 8.7399 -3.4461 3.8256 19 6 9.6037 -4.8678 2.4747 20 7 10.3003 -5.0357 1.3707 21 14 8.9281 -6.3511 3.3874 22 1 7.4476 -6.2575 3.4567 23 1 9.3120 -7.5921 2.6679 24 1 9.4870 -6.3827 4.7628 25 6 10.1204 -2.5037 0.9133 26 6 9.8199 -1.1731 0.2633 27 1 10.3244 -1.0804 -0.6984 28 6 4.7574 -1.4342 -0.0009 29 6 3.5554 -0.7036 -0.0003 30 7 2.2840 -1.0818 -0.0002 31 1 -0.3633 -0.0001 -1.0277 32 1 -0.3634 -0.8899 0.5139 33 1 -0.3633 0.8901 0.5137 34 1 1.9649 2.1276 -0.0004 35 1 4.7890 2.4160 -0.0001 36 1 6.8844 1.2125 0.0092 37 1 9.1017 1.0490 -0.6406 38 1 8.1201 1.1858 0.8812 39 1 9.9879 0.7672 3.1617 40 1 8.5840 -0.2266 2.7004 41 1 11.4470 -1.2315 3.0632 42 1 10.0906 -1.5083 4.1860 43 1 10.4633 -5.9296 1.0313 44 1 9.4566 -3.2584 0.4913 45 1 11.1504 -2.7799 0.6878 46 1 4.7416 -2.5141 -0.0015 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084661836.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:09 Heat of formation + Delta-G solvation = 140.458815 kcal Electronic energy + Delta-G solvation = -30006.875399 eV Core-core repulsion = 26093.772468 eV Total energy + Delta-G solvation = -3913.102931 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.94757 -40.69623 -38.26425 -36.91273 -35.31597 -33.65197 -32.26408 -31.89033 -30.21189 -29.39634 -29.33546 -27.33762 -26.99381 -24.12688 -23.96622 -23.11880 -22.64422 -21.10899 -20.97555 -19.82932 -18.13348 -17.89247 -17.52222 -16.46728 -16.15312 -16.05045 -15.74954 -15.29055 -14.69839 -14.63088 -14.28437 -13.89769 -13.81290 -13.59869 -13.42708 -13.29416 -13.20910 -12.88622 -12.64483 -12.48083 -12.41595 -12.05941 -11.76641 -11.59016 -11.44344 -11.00355 -10.92267 -10.76285 -10.61721 -10.48742 -10.22515 -10.21942 -9.94493 -9.78908 -9.59240 -9.03810 -8.84400 -8.29999 -8.21107 -7.92462 -6.45440 -5.66946 -3.18859 0.47164 0.95682 2.42311 2.58082 3.05678 3.10638 3.48158 3.52760 3.53905 3.80511 4.03143 4.20695 4.44837 4.53225 4.56931 4.61485 4.87336 4.99270 5.05103 5.11854 5.19924 5.33217 5.40344 5.44406 5.49111 5.49948 5.54364 5.56190 5.69430 5.73373 5.84763 5.87215 5.96863 6.12176 6.13822 6.26683 6.35586 6.38215 6.46732 6.52792 6.60379 6.79704 6.88221 6.99969 7.53309 7.73412 7.86205 7.96052 8.23556 8.64452 8.67180 9.41000 9.99995 10.50679 11.39849 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012392 B = 0.003634 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2258.952268 B = 7703.870062 C = 9184.881815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.056 3.944 3 C -0.100 4.100 4 N -0.353 5.353 5 C 0.041 3.959 6 C -0.127 4.127 7 C -0.105 4.105 8 C 0.586 3.414 9 O -0.503 6.503 10 N -0.625 5.625 11 C 0.083 3.917 12 C -0.112 4.112 13 H 0.093 0.907 14 C -0.116 4.116 15 C 0.146 3.854 16 N -0.581 5.581 17 C -0.259 4.259 18 H 0.059 0.941 19 C 0.019 3.981 20 N -0.900 5.900 21 Si 0.901 3.099 22 H -0.283 1.283 23 H -0.290 1.290 24 H -0.283 1.283 25 C 0.163 3.837 26 C 0.119 3.881 27 H 0.075 0.925 28 C -0.009 4.009 29 C 0.218 3.782 30 N -0.480 5.480 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.182 0.818 35 H 0.165 0.835 36 H 0.165 0.835 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.055 0.945 40 H 0.060 0.940 41 H 0.020 0.980 42 H 0.055 0.945 43 H 0.254 0.746 44 H 0.107 0.893 45 H 0.028 0.972 46 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.786 20.020 -4.343 22.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.078 4.078 3 C -0.232 4.232 4 N -0.024 5.024 5 C -0.080 4.080 6 C -0.147 4.147 7 C -0.115 4.115 8 C 0.375 3.625 9 O -0.378 6.378 10 N -0.361 5.361 11 C -0.040 4.040 12 C -0.131 4.131 13 H 0.111 0.889 14 C -0.155 4.155 15 C 0.019 3.981 16 N -0.303 5.303 17 C -0.389 4.389 18 H 0.077 0.923 19 C -0.180 4.180 20 N -0.543 5.543 21 Si 0.731 3.269 22 H -0.209 1.209 23 H -0.216 1.216 24 H -0.210 1.210 25 C 0.036 3.964 26 C 0.016 3.984 27 H 0.093 0.907 28 C -0.030 4.030 29 C -0.024 4.024 30 N -0.201 5.201 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.199 0.801 35 H 0.183 0.817 36 H 0.182 0.818 37 H 0.100 0.900 38 H 0.096 0.904 39 H 0.073 0.927 40 H 0.078 0.922 41 H 0.038 0.962 42 H 0.074 0.926 43 H 0.064 0.936 44 H 0.125 0.875 45 H 0.046 0.954 46 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -10.235 18.277 -4.562 21.439 hybrid contribution -0.083 0.312 0.282 0.429 sum -10.318 18.590 -4.279 21.687 Atomic orbital electron populations 1.20135 0.86813 1.03210 1.02731 1.20985 0.96931 0.87937 1.01980 1.22437 0.80847 1.01046 1.18896 1.42809 1.06138 1.08862 1.44629 1.21437 0.82730 0.98544 1.05301 1.21523 0.98289 0.93942 1.00993 1.20091 0.93992 0.93215 1.04164 1.17154 0.81328 0.86359 0.77662 1.90900 1.85906 1.13063 1.47928 1.49258 1.06260 1.08671 1.71911 1.23648 0.95837 0.85140 0.99391 1.22824 0.97119 0.97110 0.96045 0.88893 1.21828 1.01317 0.99488 0.92873 1.20768 0.95256 0.87077 0.94994 1.43026 1.70478 1.15851 1.00978 1.18970 1.23644 0.84368 1.11903 0.92331 1.25247 0.97627 0.97868 0.97303 1.69939 1.42296 1.21247 1.20856 0.86399 0.78776 0.82456 0.79306 1.20881 1.21566 1.20971 1.20031 1.00488 0.91499 0.84391 1.22756 0.78410 0.99576 0.97686 0.90725 1.20743 0.86438 1.01529 0.94325 1.20736 0.94215 0.80237 1.07176 1.70604 0.98085 1.29378 1.22033 0.90787 0.90591 0.90861 0.80076 0.81726 0.81765 0.90014 0.90449 0.92671 0.92166 0.96208 0.92598 0.93591 0.87477 0.95397 0.81665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.59 10.42 36.00 0.38 -0.22 16 2 C 0.06 0.70 7.06 -83.00 -0.59 0.12 16 3 C -0.10 -1.07 11.64 -16.50 -0.19 -1.26 16 4 N -0.35 -4.46 2.94 -62.75 -0.18 -4.64 16 5 C 0.04 0.41 10.91 -16.68 -0.18 0.23 16 6 C -0.13 -1.47 9.14 -39.54 -0.36 -1.83 16 7 C -0.11 -1.68 5.90 -104.63 -0.62 -2.30 16 8 C 0.59 11.55 7.92 -12.42 -0.10 11.45 16 9 O -0.50 -12.50 15.71 5.30 0.08 -12.41 16 10 N -0.63 -10.78 3.32 -188.67 -0.63 -11.40 16 11 C 0.08 0.97 5.96 -11.36 -0.07 0.90 16 12 C -0.11 -1.57 4.57 -90.14 -0.41 -1.98 16 13 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 14 C -0.12 -1.83 5.71 -26.62 -0.15 -1.98 16 15 C 0.15 2.95 6.45 -3.95 -0.03 2.93 16 16 N -0.58 -14.67 2.99 -176.10 -0.53 -15.20 16 17 C -0.26 -7.39 9.41 -15.06 -0.14 -7.54 16 18 H 0.06 1.67 7.83 -52.49 -0.41 1.26 16 19 C 0.02 0.56 5.28 -17.43 -0.09 0.46 16 20 N -0.90 -27.11 10.67 55.49 0.59 -26.52 16 21 Si 0.90 23.04 29.56 -169.99 -5.02 18.02 16 22 H -0.28 -7.29 7.11 56.52 0.40 -6.89 16 23 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 24 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 25 C 0.16 3.97 4.54 -6.24 -0.03 3.94 16 26 C 0.12 2.18 4.06 -77.67 -0.32 1.87 16 27 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 28 C -0.01 -0.15 9.70 -38.59 -0.37 -0.53 16 29 C 0.22 3.44 7.79 -155.97 -1.22 2.22 16 30 N -0.48 -7.74 11.31 -9.02 -0.10 -7.84 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.18 1.19 8.06 -52.49 -0.42 0.77 16 35 H 0.17 0.94 8.06 -52.49 -0.42 0.52 16 36 H 0.17 1.48 3.91 -52.49 -0.21 1.28 16 37 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.08 0.75 5.98 -51.93 -0.31 0.44 16 39 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.06 1.06 7.69 -51.93 -0.40 0.66 16 41 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.06 1.13 7.90 -51.93 -0.41 0.72 16 43 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 44 H 0.11 3.12 5.05 -51.93 -0.26 2.86 16 45 H 0.03 0.74 7.94 -51.93 -0.41 0.33 16 46 H 0.17 2.93 7.69 -52.49 -0.40 2.53 16 LS Contribution 367.84 15.07 5.54 5.54 Total: -1.00 -36.74 367.84 -10.91 -47.65 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: -6.18 Total: 0.31 kcal Atomic # 6 Polarization: 10.98 SS G_CDS: -4.49 Total: 6.49 kcal Atomic # 7 Polarization: -64.75 SS G_CDS: -0.85 Total: -65.60 kcal Atomic # 8 Polarization: -12.50 SS G_CDS: 0.08 Total: -12.41 kcal Atomic # 14 Polarization: 23.04 SS G_CDS: -5.02 Total: 18.02 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -36.74 -10.91 -47.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084661836.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.106 kcal (2) G-P(sol) polarization free energy of solvation -36.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 151.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 140.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds