Wall clock time and date at job start Sat Apr 11 2020 06:05:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35452 * 125.69266 * 2 1 4 4 N 1.36440 * 107.22000 * 180.02562 * 3 2 1 5 5 C 1.36717 * 132.26566 * 180.02562 * 4 3 2 6 6 C 1.34546 * 120.95900 * 179.69903 * 5 4 3 7 7 C 1.41779 * 120.14193 * 0.52730 * 6 5 4 8 8 C 1.47653 * 120.37243 * 179.75414 * 7 6 5 9 9 O 1.21580 * 119.99923 * 187.86241 * 8 7 6 10 10 N 1.34779 * 119.99707 * 7.59163 * 8 7 6 11 11 C 1.47292 * 136.54192 * 356.95719 * 10 8 7 12 12 C 1.54397 * 87.48398 * 151.46260 * 11 10 8 13 13 H 1.09001 * 114.91198 * 141.76709 * 12 11 10 14 14 C 1.53066 * 111.61189 * 274.18885 * 12 11 10 15 15 C 1.53145 * 109.21160 * 142.38907 * 14 12 11 16 16 N 1.46538 * 108.24737 * 301.58436 * 15 14 12 17 17 C 1.36942 * 119.73731 * 236.44336 * 16 15 14 18 18 H 1.07997 * 119.99992 * 34.62769 * 17 16 15 19 19 C 1.38813 * 119.99835 * 214.62581 * 17 16 15 20 20 N 1.31614 * 120.00271 * 355.57163 * 19 17 16 21 21 Si 1.86804 * 119.99875 * 175.57400 * 19 17 16 22 22 H 1.48502 * 109.46988 * 59.99965 * 21 19 17 23 23 H 1.48497 * 109.47262 * 179.97438 * 21 19 17 24 24 H 1.48493 * 109.47218 * 300.00093 * 21 19 17 25 25 C 1.44155 * 120.20484 * 56.39002 * 16 15 14 26 26 C 1.46464 * 136.54182 * 177.34193 * 10 8 7 27 27 H 1.08994 * 111.44309 * 96.35176 * 26 10 8 28 28 C 1.38443 * 119.25690 * 359.47974 * 7 6 5 29 29 C 1.37183 * 106.97179 * 359.97438 * 4 3 2 30 30 N 1.32652 * 108.06715 * 0.02562 * 29 4 3 31 31 H 1.09000 * 109.46718 * 90.00391 * 1 2 3 32 32 H 1.08995 * 109.47451 * 210.00718 * 1 2 3 33 33 H 1.09003 * 109.46781 * 330.00857 * 1 2 3 34 34 H 1.07993 * 126.38613 * 359.97438 * 3 2 1 35 35 H 1.08000 * 119.52520 * 359.96968 * 5 4 3 36 36 H 1.07996 * 119.93144 * 180.25835 * 6 5 4 37 37 H 1.08993 * 113.53399 * 266.07816 * 11 10 8 38 38 H 1.09005 * 113.52421 * 36.71736 * 11 10 8 39 39 H 1.08994 * 109.51877 * 262.31486 * 14 12 11 40 40 H 1.09001 * 109.51349 * 22.47122 * 14 12 11 41 41 H 1.09000 * 109.70721 * 61.27303 * 15 14 12 42 42 H 1.08998 * 109.70626 * 181.85313 * 15 14 12 43 43 H 0.96997 * 120.00146 * 179.97438 * 20 19 17 44 44 H 1.09001 * 107.86212 * 198.93407 * 25 16 15 45 45 H 1.08997 * 108.78805 * 81.24518 * 25 16 15 46 46 H 1.07998 * 120.45636 * 180.23067 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2972 1.1001 0.0000 4 7 3.5913 0.6678 -0.0006 5 6 4.7841 1.3360 -0.0004 6 6 5.9518 0.6678 0.0050 7 6 5.9608 -0.7499 -0.0008 8 6 7.2395 -1.4884 -0.0004 9 8 7.2446 -2.6950 -0.1493 10 7 8.4012 -0.8241 0.1595 11 6 8.8183 0.5813 0.3022 12 6 10.0221 0.0697 1.1225 13 1 10.9570 0.6020 0.9468 14 6 9.6629 -0.1084 2.5997 15 6 10.3670 -1.3552 3.1428 16 7 9.9412 -2.5073 2.3436 17 6 9.3708 -3.5886 2.9608 18 1 8.7399 -3.4461 3.8256 19 6 9.6037 -4.8678 2.4747 20 7 10.3003 -5.0357 1.3707 21 14 8.9281 -6.3511 3.3874 22 1 7.4476 -6.2575 3.4567 23 1 9.3120 -7.5921 2.6679 24 1 9.4870 -6.3827 4.7628 25 6 10.1204 -2.5037 0.9133 26 6 9.8199 -1.1731 0.2633 27 1 10.3244 -1.0804 -0.6984 28 6 4.7574 -1.4342 -0.0009 29 6 3.5554 -0.7036 -0.0003 30 7 2.2840 -1.0818 -0.0002 31 1 -0.3633 -0.0001 -1.0277 32 1 -0.3634 -0.8899 0.5139 33 1 -0.3633 0.8901 0.5137 34 1 1.9649 2.1276 -0.0004 35 1 4.7890 2.4160 -0.0001 36 1 6.8844 1.2125 0.0092 37 1 9.1017 1.0490 -0.6406 38 1 8.1201 1.1858 0.8812 39 1 9.9879 0.7672 3.1617 40 1 8.5840 -0.2266 2.7004 41 1 11.4470 -1.2315 3.0632 42 1 10.0906 -1.5083 4.1860 43 1 10.4633 -5.9296 1.0313 44 1 9.4566 -3.2584 0.4913 45 1 11.1504 -2.7799 0.6878 46 1 4.7416 -2.5141 -0.0015 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084661836.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:08 Heat of formation + Delta-G solvation = 115.201076 kcal Electronic energy + Delta-G solvation = -30007.970657 eV Core-core repulsion = 26093.772468 eV Total energy + Delta-G solvation = -3914.198189 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -43.90036 -42.02965 -39.60817 -38.08317 -37.13584 -34.73839 -34.02408 -32.84596 -31.96384 -30.77740 -30.35764 -28.72622 -28.20387 -25.80561 -25.23243 -24.23207 -23.92284 -22.60568 -22.00102 -21.08081 -19.61892 -19.01010 -18.85848 -17.92470 -17.46748 -17.24679 -17.04749 -16.77916 -16.19190 -15.73395 -15.63606 -15.49102 -15.14061 -14.95414 -14.86200 -14.34629 -14.13043 -14.07778 -14.01740 -13.89338 -13.58204 -13.20950 -13.06004 -12.94784 -12.76198 -12.65133 -12.46048 -12.34575 -12.25009 -12.07887 -11.97376 -11.77919 -11.45717 -11.19539 -11.01259 -10.73305 -10.43130 -9.76374 -9.58904 -8.89061 -8.52958 -7.87184 -5.41456 -0.62682 0.02742 1.34649 1.39513 1.44072 1.55582 1.65086 1.81419 1.90011 2.45304 2.58201 3.04971 3.27141 3.32872 3.43217 3.44885 3.70416 3.80016 3.92662 3.96327 4.09459 4.28612 4.30108 4.31634 4.47534 4.49522 4.53664 4.66738 4.72354 4.75702 4.83169 4.84000 4.85290 4.90550 4.97204 5.03334 5.08524 5.10984 5.16742 5.33121 5.34847 5.47157 5.58372 5.61505 5.74467 5.88701 6.02791 6.45030 6.79627 6.89048 7.21096 7.22376 7.99885 8.36707 9.14695 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012392 B = 0.003634 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2258.952268 B = 7703.870062 C = 9184.881815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.030 3.970 3 C -0.073 4.073 4 N -0.355 5.355 5 C 0.069 3.931 6 C -0.135 4.135 7 C -0.106 4.106 8 C 0.572 3.428 9 O -0.582 6.582 10 N -0.629 5.629 11 C 0.096 3.904 12 C -0.099 4.099 13 H 0.138 0.862 14 C -0.105 4.105 15 C 0.136 3.864 16 N -0.600 5.600 17 C -0.265 4.265 18 H 0.052 0.948 19 C -0.040 4.040 20 N -0.927 5.927 21 Si 0.957 3.043 22 H -0.290 1.290 23 H -0.291 1.291 24 H -0.265 1.265 25 C 0.176 3.824 26 C 0.103 3.897 27 H 0.095 0.905 28 C -0.044 4.044 29 C 0.187 3.813 30 N -0.528 5.528 31 H 0.084 0.916 32 H 0.062 0.938 33 H 0.106 0.894 34 H 0.237 0.763 35 H 0.229 0.771 36 H 0.199 0.801 37 H 0.129 0.871 38 H 0.112 0.888 39 H 0.104 0.896 40 H 0.040 0.960 41 H 0.029 0.971 42 H 0.047 0.953 43 H 0.245 0.755 44 H 0.050 0.950 45 H -0.008 1.008 46 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.538 27.012 -3.997 29.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.103 4.103 3 C -0.205 4.205 4 N -0.027 5.027 5 C -0.051 4.051 6 C -0.155 4.155 7 C -0.115 4.115 8 C 0.363 3.637 9 O -0.463 6.463 10 N -0.363 5.363 11 C -0.024 4.024 12 C -0.117 4.117 13 H 0.155 0.845 14 C -0.144 4.144 15 C 0.011 3.989 16 N -0.323 5.323 17 C -0.396 4.396 18 H 0.070 0.930 19 C -0.236 4.236 20 N -0.572 5.572 21 Si 0.785 3.215 22 H -0.217 1.217 23 H -0.217 1.217 24 H -0.190 1.190 25 C 0.049 3.951 26 C -0.001 4.001 27 H 0.113 0.887 28 C -0.066 4.066 29 C -0.053 4.053 30 N -0.250 5.250 31 H 0.103 0.897 32 H 0.081 0.919 33 H 0.125 0.875 34 H 0.253 0.747 35 H 0.246 0.754 36 H 0.215 0.785 37 H 0.147 0.853 38 H 0.129 0.871 39 H 0.122 0.878 40 H 0.058 0.942 41 H 0.047 0.953 42 H 0.066 0.934 43 H 0.055 0.945 44 H 0.068 0.932 45 H 0.010 0.990 46 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -10.960 25.362 -4.185 27.944 hybrid contribution 0.096 -1.804 0.203 1.817 sum -10.864 23.558 -3.982 26.246 Atomic orbital electron populations 1.20265 0.84383 1.04203 1.03731 1.21793 0.98729 0.87739 1.02065 1.23299 0.79422 1.02651 1.15119 1.43113 1.07857 1.07624 1.44088 1.22397 0.80906 1.00905 1.00902 1.21732 1.00609 0.91108 1.02010 1.19916 0.91292 0.95497 1.04755 1.17884 0.83250 0.85900 0.76695 1.90856 1.87213 1.16612 1.51617 1.49420 1.04956 1.11733 1.70163 1.23985 0.94572 0.82241 1.01557 1.22855 1.00413 0.94293 0.94171 0.84471 1.21713 0.99456 0.98488 0.94726 1.21014 0.96253 0.87351 0.94275 1.43250 1.70658 1.16632 1.01779 1.19230 1.23079 0.85857 1.11415 0.93017 1.25969 0.98835 1.00525 0.98250 1.70155 1.44145 1.20825 1.22124 0.85516 0.77550 0.79445 0.78982 1.21683 1.21654 1.19030 1.19602 0.97012 0.94133 0.84380 1.22801 0.79967 0.97989 0.99354 0.88694 1.20456 0.88288 1.00158 0.97680 1.20423 0.93505 0.82100 1.09311 1.70540 0.99099 1.32048 1.23303 0.89700 0.91938 0.87522 0.74716 0.75433 0.78497 0.85319 0.87053 0.87775 0.94158 0.95316 0.93430 0.94529 0.93197 0.99016 0.85715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.99 10.42 71.23 0.74 -0.25 16 2 C 0.03 0.70 7.06 41.71 0.29 1.00 16 3 C -0.07 -1.23 11.64 83.33 0.97 -0.26 16 4 N -0.36 -7.79 2.94 -352.44 -1.04 -8.83 16 5 C 0.07 0.99 10.91 83.09 0.91 1.90 16 6 C -0.13 -2.58 9.14 22.30 0.20 -2.37 16 7 C -0.11 -3.45 5.90 -19.87 -0.12 -3.57 16 8 C 0.57 23.86 7.92 86.73 0.69 24.55 16 9 O -0.58 -32.39 15.71 -3.97 -0.06 -32.45 16 10 N -0.63 -21.14 3.32 -869.10 -2.88 -24.02 16 11 C 0.10 1.70 5.96 81.21 0.48 2.18 16 12 C -0.10 -2.32 4.57 -10.48 -0.05 -2.36 16 13 H 0.14 2.19 8.14 -2.39 -0.02 2.17 16 14 C -0.10 -2.94 5.71 30.66 0.18 -2.76 16 15 C 0.14 5.43 6.45 86.42 0.56 5.99 16 16 N -0.60 -31.67 2.99 -711.06 -2.13 -33.80 16 17 C -0.27 -16.04 9.41 84.03 0.79 -15.25 16 18 H 0.05 3.12 7.83 -2.91 -0.02 3.10 16 19 C -0.04 -2.47 5.28 84.86 0.45 -2.02 16 20 N -0.93 -60.29 10.67 21.65 0.23 -60.06 16 21 Si 0.96 50.36 29.56 68.60 2.03 52.38 16 22 H -0.29 -15.45 7.11 99.48 0.71 -14.74 16 23 H -0.29 -15.18 7.11 99.48 0.71 -14.47 16 24 H -0.27 -13.02 7.11 99.48 0.71 -12.31 16 25 C 0.18 9.12 4.54 86.20 0.39 9.51 16 26 C 0.10 3.71 4.06 38.70 0.16 3.87 16 27 H 0.10 3.01 8.14 -2.39 -0.02 2.99 16 28 C -0.04 -1.62 9.70 22.91 0.22 -1.40 16 29 C 0.19 6.08 7.79 133.97 1.04 7.12 16 30 N -0.53 -17.63 11.31 -182.45 -2.06 -19.69 16 31 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.24 1.27 8.06 -2.91 -0.02 1.24 16 35 H 0.23 0.43 8.06 -2.91 -0.02 0.41 16 36 H 0.20 2.25 3.91 -2.91 -0.01 2.24 16 37 H 0.13 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.11 1.31 5.98 -2.38 -0.01 1.29 16 39 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 40 H 0.04 1.30 7.69 -2.39 -0.02 1.28 16 41 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.05 1.93 7.90 -2.39 -0.02 1.91 16 43 H 0.25 15.62 8.31 -92.71 -0.77 14.85 16 44 H 0.05 3.18 5.05 -2.39 -0.01 3.16 16 45 H -0.01 -0.45 7.94 -2.39 -0.02 -0.47 16 46 H 0.12 5.36 7.69 -2.91 -0.02 5.34 16 Total: -1.00 -98.46 367.84 3.01 -95.46 By element: Atomic # 1 Polarization: 4.13 SS G_CDS: 1.01 Total: 5.14 kcal Atomic # 6 Polarization: 17.96 SS G_CDS: 7.91 Total: 25.87 kcal Atomic # 7 Polarization: -138.52 SS G_CDS: -7.88 Total: -146.40 kcal Atomic # 8 Polarization: -32.39 SS G_CDS: -0.06 Total: -32.45 kcal Atomic # 14 Polarization: 50.36 SS G_CDS: 2.03 Total: 52.38 kcal Total: -98.46 3.01 -95.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084661836.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 210.658 kcal (2) G-P(sol) polarization free energy of solvation -98.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds