Wall clock time and date at job start Sat Apr 11 2020 06:05:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35364 * 126.38586 * 2 1 4 4 C 1.41499 * 105.50644 * 179.97438 * 3 2 1 5 5 C 1.47715 * 126.51719 * 179.97438 * 4 3 2 6 6 O 1.21563 * 120.00019 * 359.97438 * 5 4 3 7 7 N 1.34778 * 119.99754 * 179.97438 * 5 4 3 8 8 C 1.46496 * 120.00161 * 179.97438 * 7 5 4 9 9 H 1.09000 * 110.77828 * 36.78021 * 8 7 5 10 10 C 1.54324 * 110.71825 * 273.54778 * 8 7 5 11 11 N 1.47029 * 107.26829 * 219.44077 * 10 8 7 12 12 C 1.36938 * 125.64724 * 178.90348 * 11 10 8 13 13 H 1.07999 * 119.99513 * 190.38262 * 12 11 10 14 14 C 1.38818 * 119.99957 * 10.37839 * 12 11 10 15 15 N 1.31618 * 119.99484 * 194.59615 * 14 12 11 16 16 Si 1.86800 * 120.00012 * 14.59656 * 14 12 11 17 17 H 1.48498 * 109.46872 * 174.78341 * 16 14 12 18 18 H 1.48500 * 109.47331 * 294.78712 * 16 14 12 19 19 H 1.48507 * 109.46981 * 54.78670 * 16 14 12 20 20 C 1.47419 * 108.70101 * 359.16738 * 11 10 8 21 21 C 1.54690 * 104.94400 * 23.80896 * 20 11 10 22 22 H 1.09001 * 110.85019 * 81.33788 * 21 20 11 23 23 C 1.50704 * 111.10214 * 205.10553 * 21 20 11 24 24 C 1.38235 * 119.99861 * 52.10000 * 23 21 20 25 25 C 1.38238 * 119.99917 * 179.78545 * 24 23 21 26 26 C 1.38233 * 119.99805 * 0.46481 * 25 24 23 27 27 C 1.38239 * 119.99993 * 359.76239 * 26 25 24 28 28 C 1.38229 * 119.99844 * 0.02738 * 27 26 25 29 29 N 1.31809 * 106.96401 * 0.23674 * 4 3 2 30 30 N 1.28476 * 110.06792 * 359.59504 * 29 4 3 31 31 H 0.97004 * 124.88224 * 180.13060 * 30 29 4 32 32 H 1.08995 * 109.46926 * 90.00524 * 1 2 3 33 33 H 1.09005 * 109.46536 * 210.00257 * 1 2 3 34 34 H 1.09003 * 109.47203 * 329.99995 * 1 2 3 35 35 H 1.08004 * 127.24387 * 359.97438 * 3 2 1 36 36 H 0.97003 * 119.99812 * 359.97438 * 7 5 4 37 37 H 1.08998 * 109.88242 * 100.02683 * 10 8 7 38 38 H 1.09005 * 109.88503 * 338.85508 * 10 8 7 39 39 H 0.96995 * 120.00291 * 355.43329 * 15 14 12 40 40 H 1.09003 * 110.36575 * 142.73925 * 20 11 10 41 41 H 1.09000 * 110.36716 * 265.05926 * 20 11 10 42 42 H 1.08000 * 119.99994 * 359.97438 * 24 23 21 43 43 H 1.07998 * 119.99734 * 180.24887 * 25 24 23 44 44 H 1.08004 * 119.99764 * 179.79409 * 26 25 24 45 45 H 1.07997 * 119.99637 * 180.02562 * 27 26 25 46 46 H 1.08008 * 119.99325 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3100 1.0897 0.0000 4 6 3.6321 0.5854 0.0006 5 6 4.8765 1.3813 0.0003 6 8 4.8212 2.5957 -0.0010 7 7 6.0730 0.7611 0.0015 8 6 7.3072 1.5504 0.0006 9 1 7.1931 2.4472 0.6095 10 6 7.7194 1.9177 -1.4405 11 7 9.1827 1.7984 -1.5197 12 6 9.9419 2.0187 -2.6379 13 1 10.9867 1.7452 -2.6435 14 6 9.3687 2.5933 -3.7640 15 7 9.9973 2.5458 -4.9194 16 14 7.7051 3.4338 -3.6396 17 1 7.3741 4.0710 -4.9394 18 1 6.6661 2.4278 -3.3025 19 1 7.7528 4.4710 -2.5778 20 6 9.6964 1.3964 -0.1978 21 6 8.5044 0.6979 0.4979 22 1 8.4126 -0.3360 0.1654 23 6 8.6331 0.7705 1.9977 24 6 8.8469 1.9887 2.6150 25 6 8.9606 2.0558 3.9910 26 6 8.8700 0.9034 4.7490 27 6 8.6608 -0.3155 4.1314 28 6 8.5428 -0.3820 2.7557 29 7 3.5421 -0.7296 -0.0043 30 7 2.3081 -1.0870 0.0007 31 1 1.9966 -2.0057 0.0004 32 1 -0.3633 -0.0001 -1.0276 33 1 -0.3632 -0.8900 0.5139 34 1 -0.3634 0.8900 0.5138 35 1 2.0056 2.1260 -0.0004 36 1 6.1170 -0.2079 0.0029 37 1 7.4183 2.9414 -1.6626 38 1 7.2527 1.2303 -2.1462 39 1 10.8894 2.1686 -4.9710 40 1 10.5302 0.7031 -0.3096 41 1 10.0047 2.2729 0.3721 42 1 8.9222 2.8885 2.0224 43 1 9.1236 3.0082 4.4735 44 1 8.9621 0.9554 5.8239 45 1 8.5896 -1.2157 4.7236 46 1 8.3798 -1.3344 2.2732 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086576844.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:14 Heat of formation + Delta-G solvation = 100.122183 kcal Electronic energy + Delta-G solvation = -29382.384843 eV Core-core repulsion = 25467.532784 eV Total energy + Delta-G solvation = -3914.852059 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.82813 -40.00763 -38.89870 -37.35320 -34.12107 -33.11202 -32.67578 -31.96164 -31.35219 -30.82159 -28.50318 -27.78472 -27.22155 -24.60768 -23.82561 -22.64256 -21.83620 -21.41907 -20.72744 -20.19276 -19.50591 -17.86922 -17.48279 -17.11966 -16.64873 -16.09247 -16.00068 -15.45821 -14.82819 -14.70949 -14.30636 -14.09827 -14.04950 -13.80644 -13.44231 -13.30859 -13.27779 -13.08757 -12.89224 -12.80522 -12.61287 -12.51160 -12.13319 -11.73836 -11.50348 -11.14010 -11.04530 -10.94100 -10.73677 -10.54992 -10.07509 -9.95868 -9.54538 -9.44708 -9.14503 -9.02298 -8.87192 -8.81706 -8.68415 -8.33833 -7.03775 -6.25183 -3.19152 1.42752 1.48276 1.49709 1.94763 2.62811 3.28720 3.51719 3.53864 3.61196 3.78172 3.84666 4.32440 4.41893 4.65827 4.67593 4.72104 4.88514 5.00976 5.04823 5.09972 5.16772 5.26520 5.31443 5.39079 5.41515 5.47507 5.49321 5.53473 5.58212 5.64922 5.71698 5.85838 5.92919 6.08209 6.14369 6.21642 6.37833 6.44185 6.51313 6.52801 6.58344 6.63667 6.74883 6.80050 6.90812 7.08141 7.53709 7.67005 7.81588 8.34842 8.38694 9.07535 9.59194 10.24490 11.24499 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.006962 B = 0.004938 C = 0.003164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4021.025270 B = 5668.897669 C = 8848.180594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.009 3.991 3 C -0.177 4.177 4 C -0.003 4.003 5 C 0.602 3.398 6 O -0.528 6.528 7 N -0.702 5.702 8 C 0.146 3.854 9 H 0.100 0.900 10 C 0.102 3.898 11 N -0.611 5.611 12 C -0.323 4.323 13 H 0.080 0.920 14 C -0.021 4.021 15 N -0.929 5.929 16 Si 1.071 2.929 17 H -0.301 1.301 18 H -0.286 1.286 19 H -0.295 1.295 20 C 0.148 3.852 21 C -0.073 4.073 22 H 0.091 0.909 23 C -0.060 4.060 24 C -0.111 4.111 25 C -0.118 4.118 26 C -0.130 4.130 27 C -0.122 4.122 28 C -0.115 4.115 29 N -0.258 5.258 30 N -0.382 5.382 31 H 0.443 0.557 32 H 0.079 0.921 33 H 0.069 0.931 34 H 0.087 0.913 35 H 0.163 0.837 36 H 0.405 0.595 37 H 0.040 0.960 38 H 0.052 0.948 39 H 0.261 0.739 40 H 0.051 0.949 41 H 0.032 0.968 42 H 0.126 0.874 43 H 0.120 0.880 44 H 0.117 0.883 45 H 0.117 0.883 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.861 -9.454 18.019 25.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.116 4.116 3 C -0.205 4.205 4 C -0.165 4.165 5 C 0.386 3.614 6 O -0.402 6.402 7 N -0.353 5.353 8 C 0.041 3.959 9 H 0.118 0.882 10 C -0.024 4.024 11 N -0.339 5.339 12 C -0.450 4.450 13 H 0.098 0.902 14 C -0.220 4.220 15 N -0.571 5.571 16 Si 0.906 3.094 17 H -0.230 1.230 18 H -0.214 1.214 19 H -0.224 1.224 20 C 0.021 3.979 21 C -0.093 4.093 22 H 0.110 0.890 23 C -0.060 4.060 24 C -0.129 4.129 25 C -0.136 4.136 26 C -0.148 4.148 27 C -0.140 4.140 28 C -0.133 4.133 29 N -0.094 5.094 30 N -0.097 5.097 31 H 0.288 0.712 32 H 0.098 0.902 33 H 0.088 0.912 34 H 0.105 0.895 35 H 0.181 0.819 36 H 0.241 0.759 37 H 0.057 0.943 38 H 0.069 0.931 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.049 0.951 42 H 0.143 0.857 43 H 0.138 0.862 44 H 0.135 0.865 45 H 0.135 0.865 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -16.303 -8.694 17.027 25.126 hybrid contribution 0.609 -1.064 0.934 1.541 sum -15.694 -9.758 17.961 25.770 Atomic orbital electron populations 1.20347 0.86514 1.03912 1.03448 1.21448 0.95398 0.87170 1.07589 1.21554 0.90443 0.99864 1.08658 1.21986 0.95324 0.89672 1.09480 1.16880 0.81651 0.86500 0.76397 1.90806 1.86674 1.12810 1.49925 1.45762 1.04893 1.10534 1.74113 1.22120 0.81732 0.94400 0.97648 0.88231 1.22399 0.86570 0.99226 0.94171 1.44741 1.00263 1.82006 1.06844 1.20149 0.95010 1.39390 0.90422 0.90216 1.25784 1.05918 0.98827 0.91479 1.70924 1.14559 1.48570 1.23034 0.83805 0.75503 0.76645 0.73458 1.22972 1.21389 1.22374 1.21575 0.93477 0.96281 0.86551 1.21647 0.96574 1.00645 0.90442 0.89025 1.19714 0.98352 0.93378 0.94603 1.21133 0.99245 0.97846 0.94644 1.21118 1.00240 0.98310 0.93922 1.21082 1.01306 0.92885 0.99521 1.21059 1.00681 0.97615 0.94637 1.21028 1.00680 0.97826 0.93801 1.73549 1.01522 1.15109 1.19264 1.43291 1.02982 1.09495 1.53928 0.71239 0.90213 0.91167 0.89464 0.81927 0.75938 0.94330 0.93057 0.92907 0.93032 0.95072 0.85655 0.86239 0.86543 0.86461 0.86245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.40 10.44 36.01 0.38 -0.02 16 2 C 0.01 0.09 7.23 -82.21 -0.59 -0.51 16 3 C -0.18 -2.20 10.73 -39.36 -0.42 -2.62 16 4 C 0.00 -0.05 7.13 -82.76 -0.59 -0.64 16 5 C 0.60 10.64 7.82 -12.39 -0.10 10.54 16 6 O -0.53 -10.96 16.66 5.31 0.09 -10.87 16 7 N -0.70 -11.65 5.13 -53.02 -0.27 -11.92 16 8 C 0.15 2.70 2.65 -66.10 -0.18 2.53 16 9 H 0.10 1.91 6.78 -51.93 -0.35 1.56 16 10 C 0.10 2.38 4.36 -3.06 -0.01 2.37 16 11 N -0.61 -15.23 3.33 -170.21 -0.57 -15.79 16 12 C -0.32 -9.41 10.56 -15.06 -0.16 -9.57 16 13 H 0.08 2.42 8.06 -52.49 -0.42 2.00 16 14 C -0.02 -0.63 5.50 -17.43 -0.10 -0.72 16 15 N -0.93 -29.92 13.70 55.49 0.76 -29.15 16 16 Si 1.07 28.91 24.53 -169.99 -4.17 24.74 16 17 H -0.30 -8.22 7.11 56.52 0.40 -7.82 16 18 H -0.29 -7.36 5.40 56.52 0.31 -7.05 16 19 H -0.30 -7.80 6.83 56.52 0.39 -7.42 16 20 C 0.15 2.95 6.64 -2.65 -0.02 2.93 16 21 C -0.07 -1.20 2.85 -89.74 -0.26 -1.46 16 22 H 0.09 1.41 7.82 -51.93 -0.41 1.01 16 23 C -0.06 -0.87 5.00 -104.62 -0.52 -1.39 16 24 C -0.11 -1.58 8.31 -39.58 -0.33 -1.91 16 25 C -0.12 -1.45 10.05 -39.58 -0.40 -1.85 16 26 C -0.13 -1.46 10.05 -39.58 -0.40 -1.86 16 27 C -0.12 -1.38 10.05 -39.58 -0.40 -1.78 16 28 C -0.12 -1.45 9.69 -39.59 -0.38 -1.83 16 29 N -0.26 -3.26 11.92 33.42 0.40 -2.86 16 30 N -0.38 -3.41 6.83 33.50 0.23 -3.18 16 31 H 0.44 2.17 8.96 -190.43 -1.71 0.47 16 32 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 34 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.16 1.88 8.06 -52.48 -0.42 1.46 16 36 H 0.41 5.83 8.24 -40.82 -0.34 5.49 16 37 H 0.04 1.00 3.87 -51.93 -0.20 0.80 16 38 H 0.05 1.27 6.61 -51.93 -0.34 0.92 16 39 H 0.26 8.24 8.73 -40.82 -0.36 7.89 16 40 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.03 0.62 6.63 -51.93 -0.34 0.27 16 42 H 0.13 1.84 7.01 -52.49 -0.37 1.47 16 43 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 44 H 0.12 1.03 8.06 -52.48 -0.42 0.60 16 45 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 46 H 0.12 1.30 7.99 -52.48 -0.42 0.88 16 LS Contribution 375.98 15.07 5.67 5.67 Total: -1.00 -37.09 375.98 -9.89 -46.98 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -7.55 Total: 4.17 kcal Atomic # 6 Polarization: -3.31 SS G_CDS: -4.47 Total: -7.78 kcal Atomic # 7 Polarization: -63.46 SS G_CDS: 0.55 Total: -62.91 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: 0.09 Total: -10.87 kcal Atomic # 14 Polarization: 28.91 SS G_CDS: -4.17 Total: 24.74 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -37.09 -9.89 -46.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086576844.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.103 kcal (2) G-P(sol) polarization free energy of solvation -37.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.980 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds