Wall clock time and date at job start Sat Apr 11 2020 06:05:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35364 * 126.38586 * 2 1 4 4 C 1.41499 * 105.50644 * 179.97438 * 3 2 1 5 5 C 1.47715 * 126.51719 * 179.97438 * 4 3 2 6 6 O 1.21563 * 120.00019 * 359.97438 * 5 4 3 7 7 N 1.34778 * 119.99754 * 179.97438 * 5 4 3 8 8 C 1.46496 * 120.00161 * 179.97438 * 7 5 4 9 9 H 1.09000 * 110.77828 * 36.78021 * 8 7 5 10 10 C 1.54324 * 110.71825 * 273.54778 * 8 7 5 11 11 N 1.47029 * 107.26829 * 219.44077 * 10 8 7 12 12 C 1.36938 * 125.64724 * 178.90348 * 11 10 8 13 13 H 1.07999 * 119.99513 * 190.38262 * 12 11 10 14 14 C 1.38818 * 119.99957 * 10.37839 * 12 11 10 15 15 N 1.31618 * 119.99484 * 194.59615 * 14 12 11 16 16 Si 1.86800 * 120.00012 * 14.59656 * 14 12 11 17 17 H 1.48498 * 109.46872 * 174.78341 * 16 14 12 18 18 H 1.48500 * 109.47331 * 294.78712 * 16 14 12 19 19 H 1.48507 * 109.46981 * 54.78670 * 16 14 12 20 20 C 1.47419 * 108.70101 * 359.16738 * 11 10 8 21 21 C 1.54690 * 104.94400 * 23.80896 * 20 11 10 22 22 H 1.09001 * 110.85019 * 81.33788 * 21 20 11 23 23 C 1.50704 * 111.10214 * 205.10553 * 21 20 11 24 24 C 1.38235 * 119.99861 * 52.10000 * 23 21 20 25 25 C 1.38238 * 119.99917 * 179.78545 * 24 23 21 26 26 C 1.38233 * 119.99805 * 0.46481 * 25 24 23 27 27 C 1.38239 * 119.99993 * 359.76239 * 26 25 24 28 28 C 1.38229 * 119.99844 * 0.02738 * 27 26 25 29 29 N 1.31809 * 106.96401 * 0.23674 * 4 3 2 30 30 N 1.28476 * 110.06792 * 359.59504 * 29 4 3 31 31 H 0.97004 * 124.88224 * 180.13060 * 30 29 4 32 32 H 1.08995 * 109.46926 * 90.00524 * 1 2 3 33 33 H 1.09005 * 109.46536 * 210.00257 * 1 2 3 34 34 H 1.09003 * 109.47203 * 329.99995 * 1 2 3 35 35 H 1.08004 * 127.24387 * 359.97438 * 3 2 1 36 36 H 0.97003 * 119.99812 * 359.97438 * 7 5 4 37 37 H 1.08998 * 109.88242 * 100.02683 * 10 8 7 38 38 H 1.09005 * 109.88503 * 338.85508 * 10 8 7 39 39 H 0.96995 * 120.00291 * 355.43329 * 15 14 12 40 40 H 1.09003 * 110.36575 * 142.73925 * 20 11 10 41 41 H 1.09000 * 110.36716 * 265.05926 * 20 11 10 42 42 H 1.08000 * 119.99994 * 359.97438 * 24 23 21 43 43 H 1.07998 * 119.99734 * 180.24887 * 25 24 23 44 44 H 1.08004 * 119.99764 * 179.79409 * 26 25 24 45 45 H 1.07997 * 119.99637 * 180.02562 * 27 26 25 46 46 H 1.08008 * 119.99325 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3100 1.0897 0.0000 4 6 3.6321 0.5854 0.0006 5 6 4.8765 1.3813 0.0003 6 8 4.8212 2.5957 -0.0010 7 7 6.0730 0.7611 0.0015 8 6 7.3072 1.5504 0.0006 9 1 7.1931 2.4472 0.6095 10 6 7.7194 1.9177 -1.4405 11 7 9.1827 1.7984 -1.5197 12 6 9.9419 2.0187 -2.6379 13 1 10.9867 1.7452 -2.6435 14 6 9.3687 2.5933 -3.7640 15 7 9.9973 2.5458 -4.9194 16 14 7.7051 3.4338 -3.6396 17 1 7.3741 4.0710 -4.9394 18 1 6.6661 2.4278 -3.3025 19 1 7.7528 4.4710 -2.5778 20 6 9.6964 1.3964 -0.1978 21 6 8.5044 0.6979 0.4979 22 1 8.4126 -0.3360 0.1654 23 6 8.6331 0.7705 1.9977 24 6 8.8469 1.9887 2.6150 25 6 8.9606 2.0558 3.9910 26 6 8.8700 0.9034 4.7490 27 6 8.6608 -0.3155 4.1314 28 6 8.5428 -0.3820 2.7557 29 7 3.5421 -0.7296 -0.0043 30 7 2.3081 -1.0870 0.0007 31 1 1.9966 -2.0057 0.0004 32 1 -0.3633 -0.0001 -1.0276 33 1 -0.3632 -0.8900 0.5139 34 1 -0.3634 0.8900 0.5138 35 1 2.0056 2.1260 -0.0004 36 1 6.1170 -0.2079 0.0029 37 1 7.4183 2.9414 -1.6626 38 1 7.2527 1.2303 -2.1462 39 1 10.8894 2.1686 -4.9710 40 1 10.5302 0.7031 -0.3096 41 1 10.0047 2.2729 0.3721 42 1 8.9222 2.8885 2.0224 43 1 9.1236 3.0082 4.4735 44 1 8.9621 0.9554 5.8239 45 1 8.5896 -1.2157 4.7236 46 1 8.3798 -1.3344 2.2732 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086576844.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:13 Heat of formation + Delta-G solvation = 73.149139 kcal Electronic energy + Delta-G solvation = -29383.554482 eV Core-core repulsion = 25467.532784 eV Total energy + Delta-G solvation = -3916.021698 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -43.70400 -41.37315 -40.08961 -38.85641 -35.82641 -34.56492 -33.60383 -33.10564 -32.90168 -31.77304 -30.09026 -29.30314 -27.89714 -26.29807 -25.19211 -23.75382 -23.00368 -22.57901 -22.25020 -21.55896 -20.78570 -19.67579 -18.70016 -18.31624 -17.83930 -17.51212 -17.04710 -16.81895 -16.23519 -15.88063 -15.69428 -15.57885 -15.41919 -14.95590 -14.80781 -14.51726 -14.40904 -14.14840 -14.03744 -13.99047 -13.79925 -13.67799 -13.28691 -13.20627 -13.09163 -12.75756 -12.49678 -12.05956 -11.92767 -11.89407 -11.76943 -11.61313 -11.36107 -11.13071 -10.92447 -10.53304 -10.20464 -9.94008 -9.78261 -9.55193 -9.21520 -8.66025 -5.52997 0.42770 0.44487 0.53873 1.09356 1.34682 1.39529 1.59198 1.77128 2.13428 2.27067 2.40774 2.84258 3.02011 3.19908 3.33608 3.51903 3.65963 3.78894 3.84268 4.01547 4.06101 4.10214 4.17787 4.28602 4.31116 4.37419 4.44778 4.57519 4.58970 4.66344 4.73721 4.79902 4.81219 4.82973 5.02483 5.07417 5.11930 5.13676 5.19348 5.29499 5.34938 5.47413 5.60757 5.65191 5.74928 6.03808 6.08518 6.14796 6.36877 6.74833 6.82483 7.05729 7.36561 8.00648 8.84649 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.006962 B = 0.004938 C = 0.003164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4021.025270 B = 5668.897669 C = 8848.180594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.036 3.964 3 C -0.208 4.208 4 C -0.036 4.036 5 C 0.598 3.402 6 O -0.569 6.569 7 N -0.693 5.693 8 C 0.160 3.840 9 H 0.091 0.909 10 C 0.101 3.899 11 N -0.627 5.627 12 C -0.306 4.306 13 H 0.061 0.939 14 C -0.070 4.070 15 N -0.963 5.963 16 Si 1.107 2.893 17 H -0.305 1.305 18 H -0.273 1.273 19 H -0.293 1.293 20 C 0.142 3.858 21 C -0.049 4.049 22 H 0.106 0.894 23 C -0.078 4.078 24 C -0.131 4.131 25 C -0.125 4.125 26 C -0.125 4.125 27 C -0.120 4.120 28 C -0.117 4.117 29 N -0.265 5.265 30 N -0.362 5.362 31 H 0.463 0.537 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.095 0.905 35 H 0.161 0.839 36 H 0.417 0.583 37 H 0.017 0.983 38 H 0.037 0.963 39 H 0.252 0.748 40 H 0.053 0.947 41 H 0.036 0.964 42 H 0.109 0.891 43 H 0.136 0.864 44 H 0.146 0.854 45 H 0.148 0.852 46 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.423 -11.957 21.198 30.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.090 4.090 3 C -0.236 4.236 4 C -0.195 4.195 5 C 0.384 3.616 6 O -0.446 6.446 7 N -0.344 5.344 8 C 0.054 3.946 9 H 0.109 0.891 10 C -0.025 4.025 11 N -0.355 5.355 12 C -0.434 4.434 13 H 0.079 0.921 14 C -0.264 4.264 15 N -0.607 5.607 16 Si 0.938 3.062 17 H -0.234 1.234 18 H -0.199 1.199 19 H -0.222 1.222 20 C 0.017 3.983 21 C -0.069 4.069 22 H 0.124 0.876 23 C -0.078 4.078 24 C -0.149 4.149 25 C -0.143 4.143 26 C -0.143 4.143 27 C -0.138 4.138 28 C -0.135 4.135 29 N -0.103 5.103 30 N -0.080 5.080 31 H 0.312 0.688 32 H 0.111 0.889 33 H 0.116 0.884 34 H 0.114 0.886 35 H 0.179 0.821 36 H 0.255 0.745 37 H 0.034 0.966 38 H 0.054 0.946 39 H 0.061 0.939 40 H 0.072 0.928 41 H 0.054 0.946 42 H 0.127 0.873 43 H 0.154 0.846 44 H 0.164 0.836 45 H 0.166 0.834 46 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -18.870 -11.264 20.259 29.890 hybrid contribution 1.400 -0.376 0.085 1.452 sum -17.471 -11.640 20.344 29.233 Atomic orbital electron populations 1.20553 0.82987 1.05739 1.04801 1.21954 0.97096 0.85770 1.04206 1.21749 0.90174 1.01065 1.10573 1.21658 0.94752 0.90577 1.12556 1.17347 0.82630 0.86357 0.75247 1.90769 1.87371 1.14643 1.51809 1.45630 1.04100 1.10933 1.73766 1.21798 0.83409 0.95157 0.94267 0.89062 1.22355 0.85457 0.97552 0.97159 1.44808 1.01127 1.81903 1.07670 1.20120 0.94528 1.37061 0.91721 0.92148 1.26661 1.08266 0.99957 0.91550 1.70988 1.14638 1.50906 1.24208 0.83303 0.73522 0.76328 0.73036 1.23423 1.19915 1.22187 1.21767 0.95176 0.96779 0.84550 1.21412 0.93251 1.00229 0.92000 0.87627 1.19526 1.00826 0.94448 0.93023 1.21157 1.00627 0.97357 0.95761 1.21363 0.99939 0.99854 0.93149 1.21488 0.99459 0.92319 1.01034 1.21446 0.99232 0.98876 0.94260 1.21255 0.99970 0.97689 0.94560 1.73456 1.03360 1.13972 1.19523 1.43416 1.02005 1.10740 1.51798 0.68839 0.88915 0.88383 0.88637 0.82136 0.74548 0.96562 0.94557 0.93876 0.92821 0.94604 0.87303 0.84626 0.83603 0.83422 0.84488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.45 10.44 71.24 0.74 0.30 16 2 C 0.04 0.55 7.23 41.40 0.30 0.85 16 3 C -0.21 -4.96 10.73 22.41 0.24 -4.72 16 4 C -0.04 -1.05 7.13 42.46 0.30 -0.75 16 5 C 0.60 21.44 7.82 86.75 0.68 22.12 16 6 O -0.57 -24.41 16.66 -3.91 -0.07 -24.48 16 7 N -0.69 -22.95 5.13 -439.93 -2.26 -25.21 16 8 C 0.16 5.98 2.65 46.18 0.12 6.10 16 9 H 0.09 3.61 6.78 -2.39 -0.02 3.59 16 10 C 0.10 4.80 4.36 86.73 0.38 5.18 16 11 N -0.63 -32.01 3.33 -692.41 -2.30 -34.32 16 12 C -0.31 -18.41 10.56 84.03 0.89 -17.52 16 13 H 0.06 3.81 8.06 -2.91 -0.02 3.79 16 14 C -0.07 -4.42 5.50 84.86 0.47 -3.95 16 15 N -0.96 -64.14 13.70 21.65 0.30 -63.84 16 16 Si 1.11 60.84 24.53 68.60 1.68 62.53 16 17 H -0.31 -16.82 7.11 99.48 0.71 -16.12 16 18 H -0.27 -14.20 5.40 99.48 0.54 -13.67 16 19 H -0.29 -15.81 6.83 99.48 0.68 -15.13 16 20 C 0.14 5.74 6.64 86.78 0.58 6.32 16 21 C -0.05 -1.59 2.85 -10.23 -0.03 -1.62 16 22 H 0.11 3.09 7.82 -2.39 -0.02 3.07 16 23 C -0.08 -2.14 5.00 -19.87 -0.10 -2.24 16 24 C -0.13 -3.65 8.31 22.27 0.19 -3.46 16 25 C -0.13 -2.83 10.05 22.27 0.22 -2.61 16 26 C -0.13 -2.36 10.05 22.27 0.22 -2.14 16 27 C -0.12 -2.25 10.05 22.27 0.22 -2.02 16 28 C -0.12 -2.59 9.69 22.27 0.22 -2.38 16 29 N -0.27 -6.24 11.92 -48.17 -0.57 -6.81 16 30 N -0.36 -5.37 6.83 -47.93 -0.33 -5.70 16 31 H 0.46 2.77 8.96 -219.98 -1.97 0.80 16 32 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 33 H 0.10 0.05 8.14 -2.38 -0.02 0.03 16 34 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 35 H 0.16 3.74 8.06 -2.91 -0.02 3.72 16 36 H 0.42 11.64 8.24 -92.71 -0.76 10.87 16 37 H 0.02 0.89 3.87 -2.39 -0.01 0.88 16 38 H 0.04 1.83 6.61 -2.38 -0.02 1.82 16 39 H 0.25 16.60 8.73 -92.71 -0.81 15.79 16 40 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 41 H 0.04 1.44 6.63 -2.39 -0.02 1.42 16 42 H 0.11 3.30 7.01 -2.91 -0.02 3.28 16 43 H 0.14 2.52 8.06 -2.91 -0.02 2.50 16 44 H 0.15 1.89 8.06 -2.91 -0.02 1.86 16 45 H 0.15 1.87 8.06 -2.91 -0.02 1.84 16 46 H 0.14 2.50 7.99 -2.91 -0.02 2.48 16 Total: -1.00 -84.79 375.98 0.15 -84.64 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: -1.94 Total: 15.74 kcal Atomic # 6 Polarization: -8.19 SS G_CDS: 5.64 Total: -2.55 kcal Atomic # 7 Polarization: -130.71 SS G_CDS: -5.17 Total: -135.87 kcal Atomic # 8 Polarization: -24.41 SS G_CDS: -0.07 Total: -24.48 kcal Atomic # 14 Polarization: 60.84 SS G_CDS: 1.68 Total: 62.53 kcal Total: -84.79 0.15 -84.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086576844.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.785 kcal (2) G-P(sol) polarization free energy of solvation -84.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds