Wall clock time and date at job start Sat Apr 11 2020 06:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35366 * 127.24682 * 2 1 4 4 N 1.35039 * 107.22699 * 180.02562 * 3 2 1 5 5 H 0.96994 * 124.88428 * 180.02562 * 4 3 2 6 6 N 1.28473 * 110.22903 * 359.72628 * 4 3 2 7 7 C 1.31810 * 110.07215 * 0.45693 * 6 4 3 8 8 C 1.47708 * 126.51459 * 179.82031 * 7 6 4 9 9 O 1.21576 * 119.99834 * 179.68217 * 8 7 6 10 10 N 1.34774 * 120.00291 * 359.68662 * 8 7 6 11 11 C 1.46502 * 120.00036 * 179.97438 * 10 8 7 12 12 H 1.08999 * 110.77960 * 31.76129 * 11 10 8 13 13 C 1.54327 * 110.71945 * 268.52262 * 11 10 8 14 14 N 1.47022 * 107.26862 * 219.44592 * 13 11 10 15 15 C 1.36934 * 125.64819 * 178.98032 * 14 13 11 16 16 H 1.07998 * 120.00491 * 179.97438 * 15 14 13 17 17 C 1.38819 * 120.00014 * 359.95413 * 15 14 13 18 18 N 1.31621 * 119.99887 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00136 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47361 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47216 * 119.99809 * 19 17 15 22 22 H 1.48502 * 109.46995 * 239.99859 * 19 17 15 23 23 C 1.47420 * 108.70684 * 358.93723 * 14 13 11 24 24 C 1.54913 * 104.83111 * 24.13218 * 23 14 13 25 25 H 1.08996 * 111.00138 * 81.09919 * 24 23 14 26 26 C 1.50700 * 111.00516 * 204.91408 * 24 23 14 27 27 C 1.38231 * 119.99825 * 58.41265 * 26 24 23 28 28 C 1.38243 * 120.00070 * 180.02562 * 27 26 24 29 29 C 1.38235 * 119.99602 * 0.07188 * 28 27 26 30 30 C 1.38230 * 120.00326 * 359.97438 * 29 28 27 31 31 C 1.38234 * 120.00292 * 238.54403 * 26 24 23 32 32 H 1.09008 * 109.46691 * 270.00185 * 1 2 3 33 33 H 1.09001 * 109.47211 * 29.99303 * 1 2 3 34 34 H 1.08996 * 109.47609 * 150.00384 * 1 2 3 35 35 H 1.07995 * 126.38834 * 359.97438 * 3 2 1 36 36 H 0.97003 * 120.00293 * 0.02562 * 10 8 7 37 37 H 1.09000 * 109.88558 * 100.02860 * 13 11 10 38 38 H 1.09000 * 109.88282 * 338.86059 * 13 11 10 39 39 H 0.96992 * 119.99708 * 180.02562 * 18 17 15 40 40 H 1.08999 * 110.37051 * 265.29414 * 23 14 13 41 41 H 1.09000 * 110.46384 * 143.01319 * 23 14 13 42 42 H 1.08001 * 120.00367 * 0.10906 * 27 26 24 43 43 H 1.08000 * 119.99728 * 180.34119 * 28 27 26 44 44 H 1.08000 * 119.99297 * 179.97438 * 29 28 27 45 45 H 1.08001 * 120.00350 * 179.97438 * 30 29 28 46 46 H 1.08007 * 119.99474 * 359.97438 * 31 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3263 1.0776 0.0000 4 7 3.5951 0.6153 -0.0006 5 1 4.3887 1.1729 -0.0004 6 7 3.5998 -0.6694 0.0048 7 6 2.3634 -1.1264 -0.0007 8 6 1.9505 -2.5446 -0.0009 9 8 0.7697 -2.8339 -0.0005 10 7 2.8828 -3.5179 -0.0015 11 6 2.4732 -4.9245 -0.0012 12 1 1.5328 -5.0535 -0.5370 13 6 2.3573 -5.4591 1.4419 14 7 2.8874 -6.8304 1.4432 15 6 2.9810 -7.6488 2.5371 16 1 3.3866 -8.6443 2.4336 17 6 2.5548 -7.1987 3.7792 18 7 2.0603 -5.9854 3.9053 19 14 2.6831 -8.3148 5.2716 20 1 3.2684 -9.6180 4.8662 21 1 3.5525 -7.6775 6.2930 22 1 1.3300 -8.5363 5.8418 23 6 3.3005 -7.1789 0.0717 24 6 3.5821 -5.8193 -0.6152 25 1 4.5733 -5.4480 -0.3549 26 6 3.4239 -5.9262 -2.1101 27 6 2.2186 -6.3340 -2.6501 28 6 2.0736 -6.4327 -4.0213 29 6 3.1345 -6.1249 -4.8524 30 6 4.3401 -5.7180 -4.3124 31 6 4.4850 -5.6191 -2.9412 32 1 -0.3633 0.0000 1.0278 33 1 -0.3634 0.8900 -0.5137 34 1 -0.3634 -0.8900 -0.5137 35 1 2.0220 2.1138 -0.0004 36 1 3.8249 -3.2871 -0.0014 37 1 1.3124 -5.4653 1.7521 38 1 2.9428 -4.8347 2.1167 39 1 1.7629 -5.6708 4.7733 40 1 2.4975 -7.7054 -0.4442 41 1 4.2034 -7.7893 0.0891 42 1 1.3897 -6.5743 -2.0008 43 1 1.1301 -6.7460 -4.4434 44 1 3.0212 -6.2023 -5.9236 45 1 5.1691 -5.4779 -4.9616 46 1 5.4273 -5.3021 -2.5191 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086587221.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:17 Heat of formation + Delta-G solvation = 92.120013 kcal Electronic energy + Delta-G solvation = -29491.510760 eV Core-core repulsion = 25576.311701 eV Total energy + Delta-G solvation = -3915.199059 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.64632 -39.72703 -38.67728 -37.00741 -33.89110 -32.98458 -32.70356 -31.22977 -30.89401 -30.67097 -28.18396 -27.14140 -26.92368 -24.75757 -23.67955 -22.60593 -21.82430 -20.77058 -20.24708 -19.73331 -19.41911 -18.21905 -17.13191 -16.75128 -16.48371 -15.78440 -15.63694 -15.09968 -14.67784 -14.49735 -14.01272 -13.94543 -13.66316 -13.52174 -13.16646 -13.09712 -12.84901 -12.78731 -12.65512 -12.37495 -12.07167 -12.05003 -11.97937 -11.20536 -11.06387 -11.02566 -10.89525 -10.79866 -10.74762 -10.34402 -10.04571 -9.90476 -9.73130 -9.60137 -9.40664 -8.86067 -8.73125 -8.62222 -8.58839 -8.21518 -6.81755 -5.66786 -3.02303 1.56199 1.60178 1.69204 2.12031 2.82224 3.42661 3.47805 3.50754 3.57392 3.74895 3.97920 4.50861 4.55944 4.75020 4.94777 5.04477 5.15372 5.21054 5.27733 5.31131 5.40211 5.52519 5.53846 5.65376 5.68852 5.77102 5.80910 5.84800 5.87604 5.99797 6.19557 6.20600 6.22024 6.26130 6.37052 6.55353 6.59216 6.64480 6.70574 6.77842 6.83463 6.92198 7.02457 7.21020 7.58368 7.61317 7.76788 7.87912 8.06141 8.27352 8.64997 9.23605 9.84029 10.48313 11.43767 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.006955 B = 0.004640 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4024.671012 B = 6032.516753 C = 9072.591740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.145 4.145 3 C -0.026 4.026 4 N -0.385 5.385 5 H 0.445 0.555 6 N -0.259 5.259 7 C -0.003 4.003 8 C 0.602 3.398 9 O -0.529 6.529 10 N -0.698 5.698 11 C 0.127 3.873 12 H 0.094 0.906 13 C 0.172 3.828 14 N -0.604 5.604 15 C -0.230 4.230 16 H 0.080 0.920 17 C -0.006 4.006 18 N -0.918 5.918 19 Si 0.911 3.089 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.290 1.290 23 C 0.148 3.852 24 C -0.076 4.076 25 H 0.087 0.913 26 C -0.056 4.056 27 C -0.110 4.110 28 C -0.119 4.119 29 C -0.133 4.133 30 C -0.123 4.123 31 C -0.118 4.118 32 H 0.068 0.932 33 H 0.059 0.941 34 H 0.084 0.916 35 H 0.182 0.818 36 H 0.402 0.598 37 H 0.051 0.949 38 H 0.053 0.947 39 H 0.252 0.748 40 H 0.026 0.974 41 H 0.045 0.955 42 H 0.125 0.875 43 H 0.118 0.882 44 H 0.115 0.885 45 H 0.116 0.884 46 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.533 12.775 -14.718 19.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.155 4.155 3 C -0.170 4.170 4 N -0.099 5.099 5 H 0.288 0.712 6 N -0.096 5.096 7 C -0.165 4.165 8 C 0.386 3.614 9 O -0.403 6.403 10 N -0.347 5.347 11 C 0.022 3.978 12 H 0.112 0.888 13 C 0.046 3.954 14 N -0.330 5.330 15 C -0.358 4.358 16 H 0.098 0.902 17 C -0.203 4.203 18 N -0.565 5.565 19 Si 0.742 3.258 20 H -0.205 1.205 21 H -0.218 1.218 22 H -0.217 1.217 23 C 0.021 3.979 24 C -0.096 4.096 25 H 0.105 0.895 26 C -0.056 4.056 27 C -0.128 4.128 28 C -0.137 4.137 29 C -0.151 4.151 30 C -0.141 4.141 31 C -0.136 4.136 32 H 0.087 0.913 33 H 0.078 0.922 34 H 0.103 0.897 35 H 0.199 0.801 36 H 0.236 0.764 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.063 0.937 40 H 0.044 0.956 41 H 0.063 0.937 42 H 0.143 0.857 43 H 0.136 0.864 44 H 0.133 0.867 45 H 0.134 0.866 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 3.687 12.159 -14.465 19.252 hybrid contribution 0.278 0.359 0.899 1.007 sum 3.965 12.518 -13.566 18.880 Atomic orbital electron populations 1.20186 0.88081 1.02920 1.02584 1.20420 0.97669 0.90460 1.06970 1.22651 0.84264 1.00423 1.09685 1.43185 1.08441 1.04480 1.53787 0.71151 1.73539 1.23325 0.93687 1.19003 1.22039 0.89284 0.95494 1.09675 1.16799 0.85649 0.82378 0.76620 1.90770 1.16780 1.82474 1.50283 1.45726 1.09447 1.05925 1.73635 1.22566 0.96935 0.78210 1.00040 0.88844 1.21532 0.99607 0.85419 0.88804 1.44412 1.73224 1.12739 1.02674 1.19090 1.35979 0.95424 0.85348 0.90206 1.24823 1.01008 0.96835 0.97632 1.69978 1.47159 1.16342 1.22988 0.86056 0.77261 0.79538 0.82968 1.20482 1.21824 1.21733 1.21580 0.97572 0.92222 0.86478 1.21694 0.99472 0.98724 0.89675 0.89519 1.19809 0.93576 0.97267 0.94994 1.21114 0.97549 0.99108 0.95023 1.21107 0.98663 1.00274 0.93622 1.21046 0.93692 1.01070 0.99313 1.21042 0.97451 1.00550 0.95039 1.21036 0.98479 1.00776 0.93329 0.91300 0.92240 0.89740 0.80105 0.76398 0.93042 0.92902 0.93741 0.95624 0.93710 0.85738 0.86378 0.86694 0.86609 0.86349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.98 9.93 36.00 0.36 -0.63 16 2 C -0.15 -1.94 6.25 -104.41 -0.65 -2.60 16 3 C -0.03 -0.25 11.97 -17.17 -0.21 -0.46 16 4 N -0.39 -3.70 6.83 30.47 0.21 -3.49 16 5 H 0.44 2.37 8.96 -190.44 -1.71 0.66 16 6 N -0.26 -3.57 11.92 33.42 0.40 -3.17 16 7 C 0.00 -0.05 7.13 -82.77 -0.59 -0.64 16 8 C 0.60 11.33 7.82 -12.39 -0.10 11.23 16 9 O -0.53 -11.33 14.76 5.30 0.08 -11.25 16 10 N -0.70 -12.55 5.10 -53.01 -0.27 -12.82 16 11 C 0.13 2.51 2.72 -66.09 -0.18 2.34 16 12 H 0.09 1.93 6.18 -51.93 -0.32 1.61 16 13 C 0.17 4.30 5.12 -3.06 -0.02 4.28 16 14 N -0.60 -15.43 3.39 -170.07 -0.58 -16.00 16 15 C -0.23 -6.44 10.28 -15.06 -0.15 -6.59 16 16 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 17 C -0.01 -0.18 5.49 -17.43 -0.10 -0.28 16 18 N -0.92 -27.56 10.31 55.49 0.57 -26.99 16 19 Si 0.91 22.37 29.55 -169.99 -5.02 17.34 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 22 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 23 C 0.15 3.04 6.65 -2.53 -0.02 3.03 16 24 C -0.08 -1.32 2.89 -89.62 -0.26 -1.58 16 25 H 0.09 1.46 7.83 -51.93 -0.41 1.05 16 26 C -0.06 -0.86 5.00 -104.63 -0.52 -1.39 16 27 C -0.11 -1.67 8.28 -39.58 -0.33 -2.00 16 28 C -0.12 -1.56 10.05 -39.58 -0.40 -1.96 16 29 C -0.13 -1.61 10.05 -39.59 -0.40 -2.00 16 30 C -0.12 -1.50 10.05 -39.59 -0.40 -1.89 16 31 C -0.12 -1.60 9.69 -39.58 -0.38 -1.99 16 32 H 0.07 0.85 8.14 -51.92 -0.42 0.42 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.08 1.23 6.72 -51.93 -0.35 0.88 16 35 H 0.18 0.95 8.06 -52.49 -0.42 0.53 16 36 H 0.40 6.51 8.29 -40.82 -0.34 6.17 16 37 H 0.05 1.48 7.51 -51.93 -0.39 1.09 16 38 H 0.05 1.46 7.27 -51.93 -0.38 1.09 16 39 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 40 H 0.03 0.53 7.06 -51.93 -0.37 0.16 16 41 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.12 1.97 7.01 -52.49 -0.37 1.60 16 43 H 0.12 1.31 8.06 -52.49 -0.42 0.88 16 44 H 0.11 1.10 8.06 -52.49 -0.42 0.68 16 45 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 46 H 0.12 1.42 7.99 -52.48 -0.42 1.00 16 LS Contribution 380.16 15.07 5.73 5.73 Total: -1.00 -34.91 380.16 -10.77 -45.68 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: -7.55 Total: 8.11 kcal Atomic # 6 Polarization: 1.21 SS G_CDS: -4.34 Total: -3.13 kcal Atomic # 7 Polarization: -62.81 SS G_CDS: 0.33 Total: -62.48 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: 0.08 Total: -11.25 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.91 -10.77 -45.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086587221.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.795 kcal (2) G-P(sol) polarization free energy of solvation -34.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds