Wall clock time and date at job start Sat Apr 11 2020 06:05:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35366 * 127.24682 * 2 1 4 4 N 1.35039 * 107.22699 * 180.02562 * 3 2 1 5 5 H 0.96994 * 124.88428 * 180.02562 * 4 3 2 6 6 N 1.28473 * 110.22903 * 359.72628 * 4 3 2 7 7 C 1.31810 * 110.07215 * 0.45693 * 6 4 3 8 8 C 1.47708 * 126.51459 * 179.82031 * 7 6 4 9 9 O 1.21576 * 119.99834 * 179.68217 * 8 7 6 10 10 N 1.34774 * 120.00291 * 359.68662 * 8 7 6 11 11 C 1.46502 * 120.00036 * 179.97438 * 10 8 7 12 12 H 1.08999 * 110.77960 * 31.76129 * 11 10 8 13 13 C 1.54327 * 110.71945 * 268.52262 * 11 10 8 14 14 N 1.47022 * 107.26862 * 219.44592 * 13 11 10 15 15 C 1.36934 * 125.64819 * 178.98032 * 14 13 11 16 16 H 1.07998 * 120.00491 * 179.97438 * 15 14 13 17 17 C 1.38819 * 120.00014 * 359.95413 * 15 14 13 18 18 N 1.31621 * 119.99887 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00136 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47361 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47216 * 119.99809 * 19 17 15 22 22 H 1.48502 * 109.46995 * 239.99859 * 19 17 15 23 23 C 1.47420 * 108.70684 * 358.93723 * 14 13 11 24 24 C 1.54913 * 104.83111 * 24.13218 * 23 14 13 25 25 H 1.08996 * 111.00138 * 81.09919 * 24 23 14 26 26 C 1.50700 * 111.00516 * 204.91408 * 24 23 14 27 27 C 1.38231 * 119.99825 * 58.41265 * 26 24 23 28 28 C 1.38243 * 120.00070 * 180.02562 * 27 26 24 29 29 C 1.38235 * 119.99602 * 0.07188 * 28 27 26 30 30 C 1.38230 * 120.00326 * 359.97438 * 29 28 27 31 31 C 1.38234 * 120.00292 * 238.54403 * 26 24 23 32 32 H 1.09008 * 109.46691 * 270.00185 * 1 2 3 33 33 H 1.09001 * 109.47211 * 29.99303 * 1 2 3 34 34 H 1.08996 * 109.47609 * 150.00384 * 1 2 3 35 35 H 1.07995 * 126.38834 * 359.97438 * 3 2 1 36 36 H 0.97003 * 120.00293 * 0.02562 * 10 8 7 37 37 H 1.09000 * 109.88558 * 100.02860 * 13 11 10 38 38 H 1.09000 * 109.88282 * 338.86059 * 13 11 10 39 39 H 0.96992 * 119.99708 * 180.02562 * 18 17 15 40 40 H 1.08999 * 110.37051 * 265.29414 * 23 14 13 41 41 H 1.09000 * 110.46384 * 143.01319 * 23 14 13 42 42 H 1.08001 * 120.00367 * 0.10906 * 27 26 24 43 43 H 1.08000 * 119.99728 * 180.34119 * 28 27 26 44 44 H 1.08000 * 119.99297 * 179.97438 * 29 28 27 45 45 H 1.08001 * 120.00350 * 179.97438 * 30 29 28 46 46 H 1.08007 * 119.99474 * 359.97438 * 31 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3263 1.0776 0.0000 4 7 3.5951 0.6153 -0.0006 5 1 4.3887 1.1729 -0.0004 6 7 3.5998 -0.6694 0.0048 7 6 2.3634 -1.1264 -0.0007 8 6 1.9505 -2.5446 -0.0009 9 8 0.7697 -2.8339 -0.0005 10 7 2.8828 -3.5179 -0.0015 11 6 2.4732 -4.9245 -0.0012 12 1 1.5328 -5.0535 -0.5370 13 6 2.3573 -5.4591 1.4419 14 7 2.8874 -6.8304 1.4432 15 6 2.9810 -7.6488 2.5371 16 1 3.3866 -8.6443 2.4336 17 6 2.5548 -7.1987 3.7792 18 7 2.0603 -5.9854 3.9053 19 14 2.6831 -8.3148 5.2716 20 1 3.2684 -9.6180 4.8662 21 1 3.5525 -7.6775 6.2930 22 1 1.3300 -8.5363 5.8418 23 6 3.3005 -7.1789 0.0717 24 6 3.5821 -5.8193 -0.6152 25 1 4.5733 -5.4480 -0.3549 26 6 3.4239 -5.9262 -2.1101 27 6 2.2186 -6.3340 -2.6501 28 6 2.0736 -6.4327 -4.0213 29 6 3.1345 -6.1249 -4.8524 30 6 4.3401 -5.7180 -4.3124 31 6 4.4850 -5.6191 -2.9412 32 1 -0.3633 0.0000 1.0278 33 1 -0.3634 0.8900 -0.5137 34 1 -0.3634 -0.8900 -0.5137 35 1 2.0220 2.1138 -0.0004 36 1 3.8249 -3.2871 -0.0014 37 1 1.3124 -5.4653 1.7521 38 1 2.9428 -4.8347 2.1167 39 1 1.7629 -5.6708 4.7733 40 1 2.4975 -7.7054 -0.4442 41 1 4.2034 -7.7893 0.0891 42 1 1.3897 -6.5743 -2.0008 43 1 1.1301 -6.7460 -4.4434 44 1 3.0212 -6.2023 -5.9236 45 1 5.1691 -5.4779 -4.9616 46 1 5.4273 -5.3021 -2.5191 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086587221.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:16 Heat of formation + Delta-G solvation = 68.255233 kcal Electronic energy + Delta-G solvation = -29492.545614 eV Core-core repulsion = 25576.311701 eV Total energy + Delta-G solvation = -3916.233913 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.61076 -41.15510 -39.97952 -38.60268 -35.64111 -34.34557 -33.96833 -32.58281 -32.27611 -31.73591 -29.87697 -28.67086 -28.01243 -26.60559 -25.03064 -23.80322 -23.04537 -22.23172 -21.49233 -21.31047 -20.74850 -19.11657 -18.94557 -18.21621 -17.68949 -17.19249 -16.89920 -16.71997 -16.06154 -15.79047 -15.51952 -15.39676 -15.18055 -14.81232 -14.34653 -14.21463 -14.08698 -14.00078 -13.87384 -13.81235 -13.76318 -13.63143 -13.04628 -13.02759 -12.79184 -12.67891 -12.52507 -12.06887 -12.03264 -11.89708 -11.82929 -11.64082 -11.53682 -11.10303 -10.77827 -10.45850 -10.09037 -9.77396 -9.75236 -9.49849 -8.95404 -7.85541 -5.24534 0.48455 0.53571 0.56593 1.20144 1.44286 1.46309 1.56807 1.91874 2.28511 2.38387 2.48810 2.89888 3.32557 3.39892 3.54756 3.73044 3.90520 3.97259 3.99253 4.15859 4.20847 4.23602 4.29877 4.34643 4.49943 4.54464 4.55991 4.59992 4.71432 4.80178 4.90630 4.91120 5.03908 5.12980 5.16347 5.20265 5.22130 5.28263 5.42778 5.55950 5.57620 5.63687 5.67313 5.70845 5.82672 6.13108 6.18331 6.18778 6.49851 6.90235 7.04056 7.20661 7.72103 8.36229 9.23872 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.006955 B = 0.004640 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4024.671012 B = 6032.516753 C = 9072.591740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.178 4.178 3 C 0.011 3.989 4 N -0.361 5.361 5 H 0.466 0.534 6 N -0.272 5.272 7 C -0.042 4.042 8 C 0.595 3.405 9 O -0.568 6.568 10 N -0.691 5.691 11 C 0.145 3.855 12 H 0.079 0.921 13 C 0.191 3.809 14 N -0.623 5.623 15 C -0.242 4.242 16 H 0.090 0.910 17 C -0.067 4.067 18 N -0.953 5.953 19 Si 0.981 3.019 20 H -0.260 1.260 21 H -0.291 1.291 22 H -0.295 1.295 23 C 0.144 3.856 24 C -0.052 4.052 25 H 0.097 0.903 26 C -0.075 4.075 27 C -0.131 4.131 28 C -0.125 4.125 29 C -0.127 4.127 30 C -0.120 4.120 31 C -0.120 4.120 32 H 0.060 0.940 33 H 0.096 0.904 34 H 0.051 0.949 35 H 0.236 0.764 36 H 0.411 0.589 37 H -0.003 1.003 38 H 0.018 0.982 39 H 0.245 0.755 40 H 0.027 0.973 41 H 0.056 0.944 42 H 0.104 0.896 43 H 0.135 0.865 44 H 0.147 0.853 45 H 0.149 0.851 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.794 14.425 -17.189 23.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.188 4.188 3 C -0.134 4.134 4 N -0.078 5.078 5 H 0.315 0.685 6 N -0.110 5.110 7 C -0.201 4.201 8 C 0.381 3.619 9 O -0.445 6.445 10 N -0.341 5.341 11 C 0.039 3.961 12 H 0.097 0.903 13 C 0.064 3.936 14 N -0.350 5.350 15 C -0.370 4.370 16 H 0.108 0.892 17 C -0.260 4.260 18 N -0.602 5.602 19 Si 0.809 3.191 20 H -0.184 1.184 21 H -0.218 1.218 22 H -0.222 1.222 23 C 0.019 3.981 24 C -0.071 4.071 25 H 0.115 0.885 26 C -0.075 4.075 27 C -0.149 4.149 28 C -0.143 4.143 29 C -0.144 4.144 30 C -0.137 4.137 31 C -0.138 4.138 32 H 0.079 0.921 33 H 0.114 0.886 34 H 0.070 0.930 35 H 0.252 0.748 36 H 0.247 0.753 37 H 0.015 0.985 38 H 0.037 0.963 39 H 0.054 0.946 40 H 0.045 0.955 41 H 0.074 0.926 42 H 0.122 0.878 43 H 0.153 0.847 44 H 0.165 0.835 45 H 0.167 0.833 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 6.009 13.798 -16.979 22.689 hybrid contribution -0.413 -0.079 1.566 1.621 sum 5.596 13.719 -15.413 21.380 Atomic orbital electron populations 1.20126 0.88025 1.03080 1.02122 1.20726 0.98322 0.90891 1.08889 1.23301 0.82929 1.01581 1.05602 1.43342 1.09829 1.03439 1.51172 0.68543 1.73446 1.22288 0.95722 1.19520 1.21710 0.91054 0.94256 1.13079 1.17362 0.85156 0.83936 0.75483 1.90735 1.18333 1.83458 1.51963 1.45601 1.09969 1.05036 1.73534 1.22089 0.97776 0.79765 0.96430 0.90304 1.21103 0.95553 0.85447 0.91460 1.44685 1.73320 1.12697 1.04254 1.19557 1.35097 0.96122 0.86268 0.89210 1.25733 1.01228 0.98318 1.00737 1.70245 1.48593 1.18361 1.23012 0.84966 0.76787 0.78357 0.78955 1.18425 1.21827 1.22201 1.21750 0.97778 0.94308 0.84261 1.21446 0.98630 0.95718 0.91343 0.88461 1.19598 0.94764 0.99751 0.93391 1.21105 0.97124 1.00506 0.96143 1.21354 1.00148 1.00070 0.92723 1.21468 0.92981 0.99142 1.00843 1.21441 0.98474 0.99148 0.94669 1.21255 0.98339 1.00162 0.94038 0.92111 0.88563 0.93025 0.74787 0.75275 0.98496 0.96347 0.94585 0.95479 0.92566 0.87829 0.84671 0.83484 0.83339 0.84672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.88 9.93 71.24 0.71 -1.17 16 2 C -0.18 -4.62 6.25 -19.72 -0.12 -4.74 16 3 C 0.01 0.17 11.97 83.54 1.00 1.17 16 4 N -0.36 -5.81 6.83 -57.51 -0.39 -6.21 16 5 H 0.47 3.11 8.96 -220.00 -1.97 1.14 16 6 N -0.27 -7.20 11.92 -48.18 -0.57 -7.77 16 7 C -0.04 -1.36 7.13 42.45 0.30 -1.06 16 8 C 0.59 24.00 7.82 86.75 0.68 24.67 16 9 O -0.57 -26.64 14.76 -3.95 -0.06 -26.70 16 10 N -0.69 -26.52 5.10 -439.89 -2.24 -28.76 16 11 C 0.15 6.19 2.72 46.18 0.13 6.31 16 12 H 0.08 3.60 6.18 -2.39 -0.01 3.58 16 13 C 0.19 10.38 5.12 86.73 0.44 10.82 16 14 N -0.62 -33.58 3.39 -691.99 -2.35 -35.93 16 15 C -0.24 -14.00 10.28 84.04 0.86 -13.14 16 16 H 0.09 4.89 7.83 -2.91 -0.02 4.87 16 17 C -0.07 -4.00 5.49 84.86 0.47 -3.53 16 18 N -0.95 -60.90 10.31 21.65 0.22 -60.68 16 19 Si 0.98 47.40 29.55 68.60 2.03 49.43 16 20 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 21 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 22 H -0.29 -14.35 7.11 99.48 0.71 -13.64 16 23 C 0.14 6.13 6.65 86.86 0.58 6.71 16 24 C -0.05 -1.86 2.89 -10.15 -0.03 -1.89 16 25 H 0.10 3.27 7.83 -2.39 -0.02 3.25 16 26 C -0.07 -2.29 5.00 -19.87 -0.10 -2.39 16 27 C -0.13 -4.04 8.28 22.27 0.18 -3.86 16 28 C -0.13 -3.12 10.05 22.27 0.22 -2.90 16 29 C -0.13 -2.63 10.05 22.27 0.22 -2.41 16 30 C -0.12 -2.47 10.05 22.27 0.22 -2.25 16 31 C -0.12 -2.99 9.69 22.27 0.22 -2.77 16 32 H 0.06 1.55 8.14 -2.38 -0.02 1.53 16 33 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.05 1.61 6.72 -2.39 -0.02 1.59 16 35 H 0.24 0.99 8.06 -2.91 -0.02 0.96 16 36 H 0.41 13.89 8.29 -92.71 -0.77 13.13 16 37 H 0.00 -0.20 7.51 -2.39 -0.02 -0.22 16 38 H 0.02 1.11 7.27 -2.39 -0.02 1.09 16 39 H 0.24 15.25 8.31 -92.71 -0.77 14.48 16 40 H 0.03 1.16 7.06 -2.39 -0.02 1.14 16 41 H 0.06 2.25 8.14 -2.39 -0.02 2.24 16 42 H 0.10 3.55 7.01 -2.91 -0.02 3.53 16 43 H 0.14 2.81 8.06 -2.91 -0.02 2.78 16 44 H 0.15 2.12 8.06 -2.91 -0.02 2.10 16 45 H 0.15 2.12 8.06 -2.91 -0.02 2.10 16 46 H 0.14 2.86 7.99 -2.91 -0.02 2.83 16 Total: -1.00 -84.09 380.16 0.91 -83.18 By element: Atomic # 1 Polarization: 27.57 SS G_CDS: -1.71 Total: 25.86 kcal Atomic # 6 Polarization: 1.59 SS G_CDS: 5.99 Total: 7.57 kcal Atomic # 7 Polarization: -134.02 SS G_CDS: -5.34 Total: -139.35 kcal Atomic # 8 Polarization: -26.64 SS G_CDS: -0.06 Total: -26.70 kcal Atomic # 14 Polarization: 47.40 SS G_CDS: 2.03 Total: 49.43 kcal Total: -84.09 0.91 -83.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086587221.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.435 kcal (2) G-P(sol) polarization free energy of solvation -84.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds