Wall clock time and date at job start Sat Apr 11 2020 06:05:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30444 * 125.98951 * 2 1 4 4 N 1.39933 * 108.89587 * 180.02562 * 3 2 1 5 5 H 0.97002 * 125.75217 * 180.02562 * 4 3 2 6 6 C 1.34257 * 108.49360 * 359.75102 * 4 3 2 7 7 C 1.38040 * 107.41465 * 0.39321 * 6 4 3 8 8 C 1.47433 * 126.41137 * 179.87496 * 7 6 4 9 9 O 1.21604 * 119.99524 * 179.69068 * 8 7 6 10 10 N 1.34767 * 120.00388 * 359.68270 * 8 7 6 11 11 C 1.46498 * 120.00450 * 180.02562 * 10 8 7 12 12 H 1.09003 * 110.77861 * 31.76684 * 11 10 8 13 13 C 1.54329 * 110.72249 * 268.52893 * 11 10 8 14 14 N 1.47020 * 107.26889 * 219.44120 * 13 11 10 15 15 C 1.36939 * 125.64822 * 178.97142 * 14 13 11 16 16 H 1.07996 * 120.00431 * 179.97438 * 15 14 13 17 17 C 1.38814 * 119.99583 * 359.96460 * 15 14 13 18 18 N 1.31620 * 120.00296 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99613 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47259 * 60.00304 * 19 17 15 21 21 H 1.48508 * 109.46782 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.47144 * 299.99521 * 19 17 15 23 23 C 1.47423 * 108.70668 * 358.94216 * 14 13 11 24 24 C 1.54905 * 104.83170 * 24.12635 * 23 14 13 25 25 H 1.09001 * 111.00382 * 81.10637 * 24 23 14 26 26 C 1.50706 * 111.00593 * 204.91872 * 24 23 14 27 27 C 1.38234 * 120.00196 * 238.54963 * 26 24 23 28 28 C 1.38235 * 119.99814 * 179.97438 * 27 26 24 29 29 C 1.38230 * 120.00326 * 359.97438 * 28 27 26 30 30 C 1.38235 * 119.99899 * 359.95697 * 29 28 27 31 31 C 1.38234 * 120.00205 * 0.02562 * 30 29 28 32 32 H 1.09004 * 109.46951 * 269.99833 * 1 2 3 33 33 H 1.08990 * 109.47315 * 29.99798 * 1 2 3 34 34 H 1.09001 * 109.47097 * 150.00375 * 1 2 3 35 35 H 1.07999 * 126.29004 * 180.24884 * 6 4 3 36 36 H 0.97006 * 120.00211 * 0.02562 * 10 8 7 37 37 H 1.09000 * 109.88185 * 100.02398 * 13 11 10 38 38 H 1.08999 * 109.88064 * 338.85634 * 13 11 10 39 39 H 0.97002 * 120.00035 * 180.02562 * 18 17 15 40 40 H 1.09005 * 110.36415 * 265.28805 * 23 14 13 41 41 H 1.08996 * 110.36969 * 142.97055 * 23 14 13 42 42 H 1.08000 * 119.99516 * 0.24808 * 27 26 24 43 43 H 1.08000 * 119.99297 * 179.97438 * 28 27 26 44 44 H 1.08001 * 120.00371 * 179.97438 * 29 28 27 45 45 H 1.07999 * 120.00043 * 179.97438 * 30 29 28 46 46 H 1.07997 * 120.00455 * 179.97438 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2736 1.0555 0.0000 4 7 3.6111 0.6441 -0.0006 5 1 4.3842 1.2300 -0.0004 6 6 3.6439 -0.6980 0.0046 7 6 2.3373 -1.1432 -0.0006 8 6 1.8916 -2.5486 -0.0003 9 8 0.7039 -2.8097 0.0005 10 7 2.8003 -3.5438 -0.0010 11 6 2.3575 -4.9402 -0.0012 12 1 1.4144 -5.0467 -0.5374 13 6 2.2284 -5.4724 1.4416 14 7 2.7256 -6.8560 1.4426 15 6 2.7995 -7.6767 2.5363 16 1 3.1813 -8.6816 2.4326 17 6 2.3837 -7.2169 3.7784 18 7 1.9190 -5.9920 3.9049 19 14 2.4838 -8.3367 5.2702 20 1 3.8954 -8.7414 5.4916 21 1 1.9834 -7.6132 6.4667 22 1 1.6528 -9.5453 5.0385 23 6 3.1309 -7.2137 0.0711 24 6 3.4450 -5.8610 -0.6152 25 1 4.4447 -5.5134 -0.3544 26 6 3.2848 -5.9636 -2.1102 27 6 4.3532 -5.6816 -2.9408 28 6 4.2063 -5.7762 -4.3121 29 6 2.9913 -6.1533 -4.8527 30 6 1.9233 -6.4367 -4.0220 31 6 2.0702 -6.3424 -2.6507 32 1 -0.3633 0.0000 1.0277 33 1 -0.3633 0.8899 -0.5137 34 1 -0.3633 -0.8900 -0.5138 35 1 4.5298 -1.3158 0.0093 36 1 3.7478 -3.3355 -0.0013 37 1 1.1835 -5.4538 1.7515 38 1 2.8284 -4.8624 2.1168 39 1 1.6288 -5.6706 4.7729 40 1 2.3158 -7.7208 -0.4452 41 1 4.0195 -7.8447 0.0905 42 1 5.3038 -5.3916 -2.5182 43 1 5.0409 -5.5555 -4.9610 44 1 2.8764 -6.2269 -5.9240 45 1 0.9739 -6.7310 -4.4444 46 1 1.2358 -6.5634 -2.0017 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086602195.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:20 Heat of formation + Delta-G solvation = 89.508733 kcal Electronic energy + Delta-G solvation = -29489.385856 eV Core-core repulsion = 25574.073563 eV Total energy + Delta-G solvation = -3915.312292 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.39974 -39.71309 -38.58807 -36.99595 -33.92811 -32.97608 -32.66299 -30.97818 -30.71594 -30.43059 -28.19518 -27.75440 -26.95356 -24.60985 -23.15764 -22.64315 -21.87041 -20.74643 -20.05801 -19.72841 -19.44404 -18.30298 -17.03339 -16.70260 -16.15817 -15.61833 -15.25838 -15.11261 -14.70797 -14.47627 -14.34251 -13.90842 -13.66728 -13.63732 -13.21177 -12.96268 -12.84905 -12.74138 -12.71785 -12.41111 -12.12040 -12.00410 -11.96602 -11.23245 -11.10210 -11.05361 -10.95438 -10.90865 -10.75159 -10.40836 -10.08229 -9.95144 -9.74851 -9.56778 -9.42936 -8.86566 -8.77307 -8.63252 -8.60891 -8.23504 -6.84907 -5.69422 -3.05173 1.49142 1.52152 1.55700 2.21412 2.62032 3.41141 3.45573 3.47261 3.61319 3.77800 3.93583 4.48453 4.50773 4.58448 4.90058 4.99969 5.11285 5.13249 5.23793 5.27422 5.43723 5.43986 5.50758 5.60545 5.64370 5.73201 5.77084 5.78979 5.81346 5.90059 6.06713 6.16501 6.18287 6.24654 6.33868 6.52257 6.55177 6.60028 6.66969 6.73832 6.81959 6.97270 7.00604 7.16663 7.46333 7.57123 7.60238 7.84972 7.99389 8.24790 8.71229 9.20944 9.81249 10.45346 11.40789 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.006943 B = 0.004631 C = 0.003083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4031.920663 B = 6045.038769 C = 9081.007587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.135 3.865 3 N -0.305 5.305 4 N -0.465 5.465 5 H 0.442 0.558 6 C 0.102 3.898 7 C -0.277 4.277 8 C 0.593 3.407 9 O -0.538 6.538 10 N -0.710 5.710 11 C 0.130 3.870 12 H 0.093 0.907 13 C 0.172 3.828 14 N -0.604 5.604 15 C -0.233 4.233 16 H 0.079 0.921 17 C -0.005 4.005 18 N -0.918 5.918 19 Si 0.911 3.089 20 H -0.285 1.285 21 H -0.290 1.290 22 H -0.285 1.285 23 C 0.148 3.852 24 C -0.075 4.075 25 H 0.085 0.915 26 C -0.056 4.056 27 C -0.120 4.120 28 C -0.123 4.123 29 C -0.133 4.133 30 C -0.118 4.118 31 C -0.109 4.109 32 H 0.081 0.919 33 H 0.068 0.932 34 H 0.097 0.903 35 H 0.185 0.815 36 H 0.391 0.609 37 H 0.051 0.949 38 H 0.052 0.948 39 H 0.253 0.747 40 H 0.026 0.974 41 H 0.044 0.956 42 H 0.118 0.882 43 H 0.116 0.884 44 H 0.115 0.885 45 H 0.118 0.882 46 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.030 9.146 -14.644 18.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.033 4.033 3 N -0.129 5.129 4 N -0.169 5.169 5 H 0.286 0.714 6 C -0.051 4.051 7 C -0.292 4.292 8 C 0.379 3.621 9 O -0.416 6.416 10 N -0.360 5.360 11 C 0.025 3.975 12 H 0.111 0.889 13 C 0.047 3.953 14 N -0.331 5.331 15 C -0.361 4.361 16 H 0.096 0.904 17 C -0.202 4.202 18 N -0.565 5.565 19 Si 0.742 3.258 20 H -0.212 1.212 21 H -0.216 1.216 22 H -0.211 1.211 23 C 0.021 3.979 24 C -0.096 4.096 25 H 0.103 0.897 26 C -0.056 4.056 27 C -0.138 4.138 28 C -0.141 4.141 29 C -0.151 4.151 30 C -0.136 4.136 31 C -0.127 4.127 32 H 0.100 0.900 33 H 0.087 0.913 34 H 0.116 0.884 35 H 0.201 0.799 36 H 0.224 0.776 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.064 0.936 40 H 0.043 0.957 41 H 0.062 0.938 42 H 0.136 0.864 43 H 0.134 0.866 44 H 0.133 0.867 45 H 0.136 0.864 46 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 5.117 10.222 -14.387 18.376 hybrid contribution 1.214 -1.024 0.895 1.823 sum 6.331 9.199 -13.492 17.514 Atomic orbital electron populations 1.20365 0.85634 1.03945 1.03799 1.22498 0.97427 0.88699 0.94627 1.77131 0.86241 1.22511 1.27005 1.46042 1.07778 1.05417 1.57702 0.71407 1.23140 0.99119 0.85598 0.97240 1.20428 0.92013 0.94989 1.21809 1.17138 0.85805 0.83248 0.75870 1.90741 1.16236 1.84079 1.50511 1.45688 1.08815 1.06073 1.75396 1.22506 0.96695 0.78459 0.99854 0.88907 1.21529 0.99834 0.85078 0.88905 1.44404 1.74548 1.11480 1.02630 1.18990 1.37063 0.94643 0.85382 0.90357 1.24813 1.01021 0.96722 0.97612 1.69955 1.47815 1.15458 1.23222 0.86218 0.77659 0.79595 0.82369 1.21207 1.21616 1.21108 1.21581 0.97478 0.92314 0.86529 1.21688 0.99485 0.98736 0.89642 0.89669 1.19813 0.93502 0.97327 0.95001 1.21012 0.98347 1.01099 0.93317 1.21041 0.97383 1.00616 0.95050 1.21052 0.93561 1.01145 0.99345 1.21115 0.98667 1.00171 0.93642 1.21117 0.97538 0.99073 0.95009 0.90017 0.91285 0.88390 0.79853 0.77568 0.93125 0.92982 0.93619 0.95666 0.93774 0.86418 0.86624 0.86685 0.86371 0.85740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.03 9.92 36.01 0.36 -0.67 16 2 C 0.14 1.95 7.26 -82.02 -0.60 1.36 16 3 N -0.31 -4.07 12.63 33.90 0.43 -3.64 16 4 N -0.46 -4.52 7.29 30.85 0.22 -4.30 16 5 H 0.44 2.53 8.96 -182.72 -1.64 0.90 16 6 C 0.10 1.03 11.52 -16.56 -0.19 0.84 16 7 C -0.28 -3.97 6.13 -105.07 -0.64 -4.62 16 8 C 0.59 10.18 7.81 -12.52 -0.10 10.08 16 9 O -0.54 -11.10 14.56 5.27 0.08 -11.02 16 10 N -0.71 -11.18 5.09 -53.10 -0.27 -11.45 16 11 C 0.13 2.40 2.72 -66.09 -0.18 2.22 16 12 H 0.09 1.85 6.18 -51.93 -0.32 1.53 16 13 C 0.17 4.13 5.12 -3.06 -0.02 4.12 16 14 N -0.60 -14.96 3.39 -170.07 -0.58 -15.54 16 15 C -0.23 -6.36 10.28 -15.06 -0.15 -6.52 16 16 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 17 C 0.00 -0.14 5.49 -17.43 -0.10 -0.23 16 18 N -0.92 -26.99 10.31 55.49 0.57 -26.42 16 19 Si 0.91 21.98 29.55 -169.99 -5.02 16.95 16 20 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 23 C 0.15 2.92 6.65 -2.53 -0.02 2.90 16 24 C -0.08 -1.23 2.89 -89.62 -0.26 -1.48 16 25 H 0.09 1.29 7.83 -51.93 -0.41 0.88 16 26 C -0.06 -0.80 5.00 -104.62 -0.52 -1.33 16 27 C -0.12 -1.48 9.69 -39.58 -0.38 -1.87 16 28 C -0.12 -1.39 10.05 -39.59 -0.40 -1.79 16 29 C -0.13 -1.52 10.05 -39.59 -0.40 -1.92 16 30 C -0.12 -1.49 10.05 -39.58 -0.40 -1.88 16 31 C -0.11 -1.59 8.28 -39.58 -0.33 -1.92 16 32 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.10 1.41 6.55 -51.93 -0.34 1.07 16 35 H 0.18 1.12 7.46 -52.49 -0.39 0.73 16 36 H 0.39 4.87 7.49 -40.82 -0.31 4.56 16 37 H 0.05 1.43 7.51 -51.93 -0.39 1.04 16 38 H 0.05 1.38 7.27 -51.93 -0.38 1.00 16 39 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 40 H 0.03 0.51 7.06 -51.93 -0.37 0.14 16 41 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.12 1.24 7.99 -52.49 -0.42 0.82 16 43 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 44 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 45 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 46 H 0.12 1.90 7.01 -52.49 -0.37 1.53 16 LS Contribution 379.10 15.07 5.71 5.71 Total: -1.00 -35.00 379.10 -10.58 -45.58 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -7.41 Total: 6.84 kcal Atomic # 6 Polarization: 1.61 SS G_CDS: -4.32 Total: -2.71 kcal Atomic # 7 Polarization: -61.73 SS G_CDS: 0.38 Total: -61.35 kcal Atomic # 8 Polarization: -11.10 SS G_CDS: 0.08 Total: -11.02 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.00 -10.58 -45.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086602195.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.089 kcal (2) G-P(sol) polarization free energy of solvation -34.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.580 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds