Wall clock time and date at job start Sat Apr 11 2020 06:05:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30444 * 125.98951 * 2 1 4 4 N 1.39933 * 108.89587 * 180.02562 * 3 2 1 5 5 H 0.97002 * 125.75217 * 180.02562 * 4 3 2 6 6 C 1.34257 * 108.49360 * 359.75102 * 4 3 2 7 7 C 1.38040 * 107.41465 * 0.39321 * 6 4 3 8 8 C 1.47433 * 126.41137 * 179.87496 * 7 6 4 9 9 O 1.21604 * 119.99524 * 179.69068 * 8 7 6 10 10 N 1.34767 * 120.00388 * 359.68270 * 8 7 6 11 11 C 1.46498 * 120.00450 * 180.02562 * 10 8 7 12 12 H 1.09003 * 110.77861 * 31.76684 * 11 10 8 13 13 C 1.54329 * 110.72249 * 268.52893 * 11 10 8 14 14 N 1.47020 * 107.26889 * 219.44120 * 13 11 10 15 15 C 1.36939 * 125.64822 * 178.97142 * 14 13 11 16 16 H 1.07996 * 120.00431 * 179.97438 * 15 14 13 17 17 C 1.38814 * 119.99583 * 359.96460 * 15 14 13 18 18 N 1.31620 * 120.00296 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99613 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47259 * 60.00304 * 19 17 15 21 21 H 1.48508 * 109.46782 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.47144 * 299.99521 * 19 17 15 23 23 C 1.47423 * 108.70668 * 358.94216 * 14 13 11 24 24 C 1.54905 * 104.83170 * 24.12635 * 23 14 13 25 25 H 1.09001 * 111.00382 * 81.10637 * 24 23 14 26 26 C 1.50706 * 111.00593 * 204.91872 * 24 23 14 27 27 C 1.38234 * 120.00196 * 238.54963 * 26 24 23 28 28 C 1.38235 * 119.99814 * 179.97438 * 27 26 24 29 29 C 1.38230 * 120.00326 * 359.97438 * 28 27 26 30 30 C 1.38235 * 119.99899 * 359.95697 * 29 28 27 31 31 C 1.38234 * 120.00205 * 0.02562 * 30 29 28 32 32 H 1.09004 * 109.46951 * 269.99833 * 1 2 3 33 33 H 1.08990 * 109.47315 * 29.99798 * 1 2 3 34 34 H 1.09001 * 109.47097 * 150.00375 * 1 2 3 35 35 H 1.07999 * 126.29004 * 180.24884 * 6 4 3 36 36 H 0.97006 * 120.00211 * 0.02562 * 10 8 7 37 37 H 1.09000 * 109.88185 * 100.02398 * 13 11 10 38 38 H 1.08999 * 109.88064 * 338.85634 * 13 11 10 39 39 H 0.97002 * 120.00035 * 180.02562 * 18 17 15 40 40 H 1.09005 * 110.36415 * 265.28805 * 23 14 13 41 41 H 1.08996 * 110.36969 * 142.97055 * 23 14 13 42 42 H 1.08000 * 119.99516 * 0.24808 * 27 26 24 43 43 H 1.08000 * 119.99297 * 179.97438 * 28 27 26 44 44 H 1.08001 * 120.00371 * 179.97438 * 29 28 27 45 45 H 1.07999 * 120.00043 * 179.97438 * 30 29 28 46 46 H 1.07997 * 120.00455 * 179.97438 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2736 1.0555 0.0000 4 7 3.6111 0.6441 -0.0006 5 1 4.3842 1.2300 -0.0004 6 6 3.6439 -0.6980 0.0046 7 6 2.3373 -1.1432 -0.0006 8 6 1.8916 -2.5486 -0.0003 9 8 0.7039 -2.8097 0.0005 10 7 2.8003 -3.5438 -0.0010 11 6 2.3575 -4.9402 -0.0012 12 1 1.4144 -5.0467 -0.5374 13 6 2.2284 -5.4724 1.4416 14 7 2.7256 -6.8560 1.4426 15 6 2.7995 -7.6767 2.5363 16 1 3.1813 -8.6816 2.4326 17 6 2.3837 -7.2169 3.7784 18 7 1.9190 -5.9920 3.9049 19 14 2.4838 -8.3367 5.2702 20 1 3.8954 -8.7414 5.4916 21 1 1.9834 -7.6132 6.4667 22 1 1.6528 -9.5453 5.0385 23 6 3.1309 -7.2137 0.0711 24 6 3.4450 -5.8610 -0.6152 25 1 4.4447 -5.5134 -0.3544 26 6 3.2848 -5.9636 -2.1102 27 6 4.3532 -5.6816 -2.9408 28 6 4.2063 -5.7762 -4.3121 29 6 2.9913 -6.1533 -4.8527 30 6 1.9233 -6.4367 -4.0220 31 6 2.0702 -6.3424 -2.6507 32 1 -0.3633 0.0000 1.0277 33 1 -0.3633 0.8899 -0.5137 34 1 -0.3633 -0.8900 -0.5138 35 1 4.5298 -1.3158 0.0093 36 1 3.7478 -3.3355 -0.0013 37 1 1.1835 -5.4538 1.7515 38 1 2.8284 -4.8624 2.1168 39 1 1.6288 -5.6706 4.7729 40 1 2.3158 -7.7208 -0.4452 41 1 4.0195 -7.8447 0.0905 42 1 5.3038 -5.3916 -2.5182 43 1 5.0409 -5.5555 -4.9610 44 1 2.8764 -6.2269 -5.9240 45 1 0.9739 -6.7310 -4.4444 46 1 1.2358 -6.5634 -2.0017 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086602195.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:19 Heat of formation + Delta-G solvation = 65.623057 kcal Electronic energy + Delta-G solvation = -29490.421617 eV Core-core repulsion = 25574.073563 eV Total energy + Delta-G solvation = -3916.348053 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.39382 -40.99807 -39.78964 -38.50562 -35.56967 -34.32046 -33.88147 -32.54049 -31.70834 -31.57830 -29.63869 -28.91597 -28.51080 -26.42824 -24.33207 -23.75182 -22.99996 -22.23473 -21.30850 -21.18094 -20.57411 -19.33254 -18.88376 -17.94329 -17.29942 -17.02084 -16.77893 -16.30130 -16.02639 -15.64535 -15.42742 -15.37509 -15.10108 -14.97380 -14.47527 -14.22468 -14.04753 -13.95417 -13.79015 -13.73783 -13.72651 -13.58508 -13.00505 -12.96202 -12.70014 -12.60949 -12.48325 -12.14294 -12.00694 -11.95576 -11.84316 -11.59444 -11.48047 -10.84723 -10.71263 -10.50613 -10.11755 -9.75144 -9.71082 -9.44093 -8.90970 -7.82359 -5.20728 0.52544 0.56692 0.60538 1.09433 1.46236 1.49941 1.56175 1.81874 2.28642 2.51387 2.51805 2.94016 3.35491 3.47792 3.59039 3.78090 3.81102 3.98205 4.03762 4.21289 4.24488 4.26039 4.31370 4.35802 4.42080 4.50589 4.61888 4.62789 4.75438 4.75693 4.84669 4.89597 4.95898 4.99285 5.18768 5.23648 5.27576 5.35589 5.46220 5.48436 5.66114 5.67453 5.71502 5.77531 5.88634 6.17379 6.22420 6.28223 6.49663 6.75331 7.08329 7.42234 7.76577 8.40030 9.26025 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.006943 B = 0.004631 C = 0.003083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4031.920663 B = 6045.038769 C = 9081.007587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.118 3.882 3 N -0.322 5.322 4 N -0.444 5.444 5 H 0.462 0.538 6 C 0.139 3.861 7 C -0.318 4.318 8 C 0.589 3.411 9 O -0.586 6.586 10 N -0.697 5.697 11 C 0.149 3.851 12 H 0.072 0.928 13 C 0.190 3.810 14 N -0.623 5.623 15 C -0.243 4.243 16 H 0.088 0.912 17 C -0.065 4.065 18 N -0.951 5.951 19 Si 0.978 3.022 20 H -0.271 1.271 21 H -0.298 1.298 22 H -0.279 1.279 23 C 0.142 3.858 24 C -0.049 4.049 25 H 0.107 0.893 26 C -0.073 4.073 27 C -0.116 4.116 28 C -0.120 4.120 29 C -0.129 4.129 30 C -0.128 4.128 31 C -0.132 4.132 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.077 0.923 35 H 0.233 0.767 36 H 0.411 0.589 37 H -0.009 1.009 38 H 0.024 0.976 39 H 0.244 0.756 40 H 0.021 0.979 41 H 0.056 0.944 42 H 0.143 0.857 43 H 0.149 0.851 44 H 0.144 0.856 45 H 0.130 0.870 46 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.718 9.596 -16.975 21.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.049 4.049 3 N -0.146 5.146 4 N -0.150 5.150 5 H 0.311 0.689 6 C -0.016 4.016 7 C -0.333 4.333 8 C 0.378 3.622 9 O -0.467 6.467 10 N -0.348 5.348 11 C 0.042 3.958 12 H 0.090 0.910 13 C 0.063 3.937 14 N -0.350 5.350 15 C -0.372 4.372 16 H 0.105 0.895 17 C -0.258 4.258 18 N -0.599 5.599 19 Si 0.806 3.194 20 H -0.197 1.197 21 H -0.224 1.224 22 H -0.205 1.205 23 C 0.017 3.983 24 C -0.069 4.069 25 H 0.125 0.875 26 C -0.073 4.073 27 C -0.134 4.134 28 C -0.138 4.138 29 C -0.147 4.147 30 C -0.146 4.146 31 C -0.150 4.150 32 H 0.095 0.905 33 H 0.107 0.893 34 H 0.096 0.904 35 H 0.249 0.751 36 H 0.247 0.753 37 H 0.009 0.991 38 H 0.042 0.958 39 H 0.054 0.946 40 H 0.039 0.961 41 H 0.074 0.926 42 H 0.161 0.839 43 H 0.167 0.833 44 H 0.161 0.839 45 H 0.148 0.852 46 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 8.873 10.694 -16.762 21.773 hybrid contribution 0.087 -1.162 1.514 1.911 sum 8.960 9.532 -15.248 20.091 Atomic orbital electron populations 1.20300 0.85868 1.03878 1.03506 1.22645 0.97923 0.89219 0.95158 1.77077 0.87668 1.22306 1.27576 1.46083 1.07431 1.05793 1.55704 0.68913 1.23700 0.98874 0.85815 0.93197 1.20273 0.94143 0.93120 1.25811 1.17633 0.85261 0.84600 0.74692 1.90716 1.18341 1.84946 1.52667 1.45446 1.09807 1.04578 1.74983 1.21962 0.97391 0.80442 0.95959 0.90970 1.21135 0.95576 0.85113 0.91869 1.44674 1.74612 1.11554 1.04134 1.19449 1.36007 0.95376 0.86344 0.89467 1.25669 1.01365 0.98140 1.00579 1.70219 1.49313 1.17358 1.23055 0.85164 0.78180 0.77651 0.78409 1.19674 1.22443 1.20486 1.21760 0.97529 0.94729 0.84299 1.21444 0.99183 0.95313 0.90955 0.87515 1.19618 0.94459 0.99648 0.93611 1.21276 0.98384 0.99971 0.93729 1.21451 0.98217 0.99135 0.94959 1.21449 0.93074 0.99448 1.00695 1.21323 1.00060 1.00301 0.92915 1.21095 0.97292 1.00639 0.95948 0.90458 0.89311 0.90387 0.75111 0.75251 0.99082 0.95830 0.94629 0.96076 0.92614 0.83892 0.83315 0.83864 0.85169 0.88195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.12 9.92 71.24 0.71 -1.42 16 2 C 0.12 3.40 7.26 43.52 0.32 3.72 16 3 N -0.32 -8.12 12.63 -46.67 -0.59 -8.71 16 4 N -0.44 -7.22 7.29 -56.32 -0.41 -7.63 16 5 H 0.46 3.45 8.96 -213.43 -1.91 1.54 16 6 C 0.14 2.37 11.52 84.28 0.97 3.34 16 7 C -0.32 -8.94 6.13 -20.15 -0.12 -9.06 16 8 C 0.59 20.91 7.81 86.67 0.68 21.59 16 9 O -0.59 -26.08 14.56 -4.04 -0.06 -26.14 16 10 N -0.70 -22.06 5.09 -440.17 -2.24 -24.30 16 11 C 0.15 5.74 2.72 46.18 0.13 5.87 16 12 H 0.07 3.12 6.18 -2.39 -0.01 3.10 16 13 C 0.19 9.71 5.12 86.73 0.44 10.15 16 14 N -0.62 -32.07 3.39 -691.99 -2.35 -34.42 16 15 C -0.24 -13.64 10.28 84.03 0.86 -12.77 16 16 H 0.09 4.61 7.83 -2.91 -0.02 4.59 16 17 C -0.06 -3.72 5.49 84.86 0.47 -3.25 16 18 N -0.95 -58.97 10.31 21.65 0.22 -58.74 16 19 Si 0.98 46.23 29.55 68.60 2.03 48.26 16 20 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 21 H -0.30 -14.34 7.11 99.48 0.71 -13.64 16 22 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 23 C 0.14 5.68 6.65 86.85 0.58 6.26 16 24 C -0.05 -1.57 2.89 -10.15 -0.03 -1.60 16 25 H 0.11 2.94 7.83 -2.39 -0.02 2.92 16 26 C -0.07 -1.99 5.00 -19.86 -0.10 -2.09 16 27 C -0.12 -2.43 9.69 22.27 0.22 -2.21 16 28 C -0.12 -2.16 10.05 22.27 0.22 -1.94 16 29 C -0.13 -2.49 10.05 22.27 0.22 -2.26 16 30 C -0.13 -3.05 10.05 22.27 0.22 -2.83 16 31 C -0.13 -3.84 8.28 22.27 0.18 -3.65 16 32 H 0.08 2.13 8.14 -2.38 -0.02 2.11 16 33 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.08 2.45 6.55 -2.39 -0.02 2.44 16 35 H 0.23 1.56 7.46 -2.91 -0.02 1.54 16 36 H 0.41 9.38 7.49 -92.70 -0.69 8.68 16 37 H -0.01 -0.56 7.51 -2.39 -0.02 -0.58 16 38 H 0.02 1.32 7.27 -2.39 -0.02 1.30 16 39 H 0.24 14.92 8.31 -92.71 -0.77 14.15 16 40 H 0.02 0.88 7.06 -2.38 -0.02 0.86 16 41 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 42 H 0.14 2.25 7.99 -2.91 -0.02 2.23 16 43 H 0.15 1.74 8.06 -2.91 -0.02 1.72 16 44 H 0.14 1.95 8.06 -2.91 -0.02 1.92 16 45 H 0.13 2.66 8.06 -2.91 -0.02 2.63 16 46 H 0.10 3.31 7.01 -2.91 -0.02 3.29 16 Total: -1.00 -83.43 379.10 0.99 -82.44 By element: Atomic # 1 Polarization: 22.97 SS G_CDS: -1.58 Total: 21.40 kcal Atomic # 6 Polarization: 1.87 SS G_CDS: 5.97 Total: 7.84 kcal Atomic # 7 Polarization: -128.43 SS G_CDS: -5.37 Total: -133.80 kcal Atomic # 8 Polarization: -26.08 SS G_CDS: -0.06 Total: -26.14 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.26 kcal Total: -83.43 0.99 -82.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086602195.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.061 kcal (2) G-P(sol) polarization free energy of solvation -83.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds