Wall clock time and date at job start Sat Apr 11 2020 06:05:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35560 * 125.82556 * 2 1 4 4 N 1.35405 * 107.16078 * 180.13830 * 3 2 1 5 5 H 0.97001 * 126.44288 * 179.85167 * 4 3 2 6 6 C 1.36670 * 107.11782 * 359.58162 * 4 3 2 7 7 C 1.47410 * 125.85890 * 180.28297 * 6 4 3 8 8 O 1.21599 * 120.00383 * 0.02562 * 7 6 4 9 9 N 1.34780 * 119.99797 * 180.02562 * 7 6 4 10 10 C 1.46499 * 119.99996 * 180.02562 * 9 7 6 11 11 H 1.09004 * 110.64122 * 36.69241 * 10 9 7 12 12 C 1.54322 * 110.72262 * 273.54333 * 10 9 7 13 13 N 1.47016 * 107.27256 * 219.44655 * 12 10 9 14 14 C 1.36942 * 125.64456 * 178.90684 * 13 12 10 15 15 H 1.08000 * 119.99414 * 180.02562 * 14 13 12 16 16 C 1.38807 * 120.00395 * 0.02562 * 14 13 12 17 17 N 1.31623 * 119.99531 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00127 * 179.97438 * 16 14 13 19 19 H 1.48508 * 109.46972 * 90.00215 * 18 16 14 20 20 H 1.48503 * 109.47197 * 209.99708 * 18 16 14 21 21 H 1.48498 * 109.47285 * 330.00327 * 18 16 14 22 22 C 1.47421 * 108.70483 * 358.94164 * 13 12 10 23 23 C 1.54902 * 104.83416 * 24.12874 * 22 13 12 24 24 H 1.09004 * 111.00373 * 81.06301 * 23 22 13 25 25 C 1.50699 * 111.00834 * 204.91863 * 23 22 13 26 26 C 1.38236 * 119.99845 * 51.91869 * 25 23 22 27 27 C 1.38241 * 119.99797 * 179.79231 * 26 25 23 28 28 C 1.38237 * 119.99762 * 0.46029 * 27 26 25 29 29 C 1.38235 * 120.00100 * 359.77424 * 28 27 26 30 30 C 1.38232 * 120.00162 * 0.02562 * 29 28 27 31 31 N 1.31611 * 108.27663 * 0.26607 * 6 4 3 32 32 H 1.08998 * 109.46952 * 270.30847 * 1 2 3 33 33 H 1.09004 * 109.46935 * 30.31163 * 1 2 3 34 34 H 1.09003 * 109.47218 * 150.30719 * 1 2 3 35 35 H 1.08000 * 126.42128 * 0.02562 * 3 2 1 36 36 H 0.96999 * 119.99982 * 0.02562 * 9 7 6 37 37 H 1.09003 * 109.87874 * 338.86447 * 12 10 9 38 38 H 1.09001 * 109.88122 * 100.02586 * 12 10 9 39 39 H 0.97006 * 119.99600 * 180.02562 * 17 16 14 40 40 H 1.09000 * 110.36568 * 142.97191 * 22 13 12 41 41 H 1.09002 * 110.36328 * 265.29146 * 22 13 12 42 42 H 1.08001 * 120.00182 * 0.02562 * 26 25 23 43 43 H 1.07996 * 119.99994 * 180.25772 * 27 26 25 44 44 H 1.07997 * 119.99874 * 179.79134 * 28 27 26 45 45 H 1.07998 * 119.99881 * 179.97438 * 29 28 27 46 46 H 1.07996 * 120.00049 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3005 1.0991 0.0000 4 7 3.5833 0.6658 -0.0031 5 1 4.3790 1.2207 -0.0059 6 6 3.5465 -0.7004 0.0046 7 6 4.7174 -1.5958 0.0104 8 8 5.8401 -1.1287 0.0089 9 7 4.5437 -2.9323 0.0173 10 6 5.7074 -3.8222 0.0236 11 1 6.5087 -3.4027 0.6320 12 6 6.1973 -4.0908 -1.4149 13 7 6.5857 -5.5069 -1.4866 14 6 7.0552 -6.1503 -2.6006 15 1 7.3140 -7.1976 -2.5504 16 6 7.1985 -5.4564 -3.7942 17 7 6.8826 -4.1801 -3.8554 18 14 7.8397 -6.3338 -5.3135 19 1 6.6991 -6.9077 -6.0720 20 1 8.5690 -5.3669 -6.1728 21 1 8.7604 -7.4244 -4.9037 22 6 6.3851 -6.1198 -0.1609 23 6 5.3142 -5.2365 0.5264 24 1 4.3123 -5.5056 0.1918 25 6 5.4223 -5.3257 2.0269 26 6 6.6386 -5.1074 2.6464 27 6 6.7369 -5.1850 4.0231 28 6 5.6208 -5.4902 4.7795 29 6 4.4055 -5.7132 4.1596 30 6 4.3064 -5.6316 2.7833 31 7 2.2861 -1.0793 0.0063 32 1 -0.3633 0.0055 1.0276 33 1 -0.3633 0.8872 -0.5187 34 1 -0.3634 -0.8927 -0.5091 35 1 1.9712 2.1277 0.0004 36 1 3.6481 -3.3050 0.0180 37 1 5.3937 -3.8904 -2.1236 38 1 7.0570 -3.4588 -1.6378 39 1 6.9824 -3.6952 -4.6897 40 1 6.0227 -7.1423 -0.2667 41 1 7.3139 -6.1027 0.4093 42 1 7.5114 -4.8726 2.0551 43 1 7.6862 -5.0103 4.5074 44 1 5.6982 -5.5541 5.8548 45 1 3.5337 -5.9520 4.7506 46 1 3.3570 -5.8062 2.2990 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086613670.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:23 Heat of formation + Delta-G solvation = 74.744798 kcal Electronic energy + Delta-G solvation = -29302.839189 eV Core-core repulsion = 25386.886684 eV Total energy + Delta-G solvation = -3915.952505 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.27156 -39.78697 -38.76643 -37.06859 -34.07640 -33.25656 -32.73036 -31.26322 -30.93270 -30.68976 -28.40549 -27.26540 -26.75238 -24.69984 -23.45623 -22.61909 -21.83559 -20.69773 -20.38291 -19.85961 -19.71939 -18.43251 -17.04360 -16.70891 -16.26965 -15.80184 -15.63305 -15.14508 -14.71084 -14.56142 -14.18736 -14.10993 -13.89674 -13.71834 -13.21373 -13.14150 -12.90568 -12.87811 -12.72282 -12.40598 -12.35351 -12.09010 -12.05824 -11.27003 -11.13090 -11.04605 -10.89724 -10.75204 -10.40556 -10.32194 -10.16318 -10.13674 -9.98473 -9.90686 -9.75103 -8.79511 -8.74204 -8.61438 -8.48941 -8.27570 -6.84965 -5.69517 -3.05097 1.42022 1.53166 1.57651 2.54868 2.66644 3.41592 3.46342 3.48769 3.55906 3.65855 3.94826 4.30326 4.50143 4.85489 4.91504 5.00646 5.02204 5.09496 5.12951 5.27137 5.29188 5.48695 5.56862 5.60718 5.60952 5.65509 5.71807 5.76815 5.80906 5.83976 5.88241 6.13235 6.17643 6.22061 6.31541 6.51566 6.56496 6.62128 6.67359 6.68633 6.75033 6.96729 7.07769 7.18222 7.48086 7.56724 7.69621 7.83518 7.93529 8.23928 8.42381 9.20539 9.81194 10.44946 11.41093 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.006865 B = 0.004479 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4077.918152 B = 6250.528604 C = 9358.399121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.004 4.004 3 C -0.032 4.032 4 N -0.525 5.525 5 H 0.430 0.570 6 C 0.161 3.839 7 C 0.604 3.396 8 O -0.539 6.539 9 N -0.683 5.683 10 C 0.129 3.871 11 H 0.091 0.909 12 C 0.173 3.827 13 N -0.603 5.603 14 C -0.231 4.231 15 H 0.080 0.920 16 C -0.006 4.006 17 N -0.918 5.918 18 Si 0.912 3.088 19 H -0.289 1.289 20 H -0.291 1.291 21 H -0.281 1.281 22 C 0.147 3.853 23 C -0.074 4.074 24 H 0.089 0.911 25 C -0.058 4.058 26 C -0.111 4.111 27 C -0.120 4.120 28 C -0.132 4.132 29 C -0.122 4.122 30 C -0.116 4.116 31 N -0.442 5.442 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.184 0.816 36 H 0.408 0.592 37 H 0.054 0.946 38 H 0.052 0.948 39 H 0.253 0.747 40 H 0.046 0.954 41 H 0.027 0.973 42 H 0.125 0.875 43 H 0.118 0.882 44 H 0.115 0.885 45 H 0.117 0.883 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.513 7.008 14.544 19.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.138 4.138 3 C -0.171 4.171 4 N -0.126 5.126 5 H 0.269 0.731 6 C -0.101 4.101 7 C 0.387 3.613 8 O -0.415 6.415 9 N -0.333 5.333 10 C 0.024 3.976 11 H 0.109 0.891 12 C 0.047 3.953 13 N -0.330 5.330 14 C -0.359 4.359 15 H 0.098 0.902 16 C -0.202 4.202 17 N -0.565 5.565 18 Si 0.743 3.257 19 H -0.216 1.216 20 H -0.217 1.217 21 H -0.206 1.206 22 C 0.020 3.980 23 C -0.094 4.094 24 H 0.108 0.892 25 C -0.059 4.059 26 C -0.129 4.129 27 C -0.138 4.138 28 C -0.151 4.151 29 C -0.140 4.140 30 C -0.134 4.134 31 N -0.166 5.166 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.201 0.799 36 H 0.244 0.756 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.063 0.937 40 H 0.065 0.935 41 H 0.045 0.955 42 H 0.143 0.857 43 H 0.136 0.864 44 H 0.133 0.867 45 H 0.135 0.865 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -9.857 6.523 14.297 18.550 hybrid contribution 0.487 0.697 -0.881 1.225 sum -9.369 7.220 13.416 17.886 Atomic orbital electron populations 1.20041 0.87205 1.02926 1.02255 1.20889 0.96941 0.88070 1.07875 1.22663 0.83129 1.00899 1.10363 1.42895 1.09120 1.07670 1.52926 0.73057 1.22803 0.93853 0.82310 1.11166 1.16402 0.85347 0.82240 0.77305 1.90847 1.23602 1.75953 1.51099 1.45551 1.10870 1.04416 1.72445 1.22621 0.86964 0.87176 1.00816 0.89058 1.21533 0.99472 0.85709 0.88607 1.44395 1.76924 1.06228 1.05461 1.19046 1.36452 0.93818 0.86619 0.90197 1.24820 1.01511 0.96021 0.97896 1.69967 1.53501 1.07398 1.25669 0.86118 0.78374 0.78297 0.82950 1.21593 1.21702 1.20641 1.21611 0.93984 0.95224 0.87139 1.21684 1.01612 0.96182 0.89957 0.89230 1.19804 0.93369 0.97718 0.94983 1.21123 0.97704 0.99572 0.94516 1.21106 0.98432 1.00227 0.93994 1.21058 0.93231 1.01340 0.99424 1.21057 0.97497 1.00783 0.94675 1.21055 0.98166 1.00435 0.93774 1.70117 0.99226 1.30855 1.16369 0.91358 0.91261 0.90890 0.79927 0.75627 0.92784 0.92979 0.93695 0.93548 0.95506 0.85704 0.86401 0.86674 0.86520 0.86201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.56 10.42 36.01 0.38 -0.19 16 2 C 0.00 -0.05 7.07 -82.99 -0.59 -0.63 16 3 C -0.03 -0.32 11.91 -16.93 -0.20 -0.52 16 4 N -0.52 -6.41 6.14 -10.78 -0.07 -6.47 16 5 H 0.43 4.37 8.96 -40.82 -0.37 4.00 16 6 C 0.16 2.53 7.95 -154.52 -1.23 1.30 16 7 C 0.60 11.04 7.81 -12.52 -0.10 10.95 16 8 O -0.54 -11.25 16.82 5.28 0.09 -11.17 16 9 N -0.68 -12.04 5.13 -53.10 -0.27 -12.31 16 10 C 0.13 2.49 2.65 -66.09 -0.18 2.32 16 11 H 0.09 1.84 6.79 -51.93 -0.35 1.49 16 12 C 0.17 4.25 5.12 -3.07 -0.02 4.24 16 13 N -0.60 -15.23 3.39 -170.08 -0.58 -15.81 16 14 C -0.23 -6.41 10.28 -15.06 -0.15 -6.56 16 15 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 16 C -0.01 -0.17 5.49 -17.43 -0.10 -0.26 16 17 N -0.92 -27.40 10.31 55.49 0.57 -26.83 16 18 Si 0.91 22.24 29.55 -169.99 -5.02 17.22 16 19 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 20 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 C 0.15 2.96 6.63 -2.53 -0.02 2.95 16 23 C -0.07 -1.27 2.87 -89.62 -0.26 -1.53 16 24 H 0.09 1.48 7.83 -51.93 -0.41 1.07 16 25 C -0.06 -0.88 5.00 -104.62 -0.52 -1.40 16 26 C -0.11 -1.64 8.31 -39.58 -0.33 -1.97 16 27 C -0.12 -1.53 10.05 -39.58 -0.40 -1.93 16 28 C -0.13 -1.56 10.05 -39.58 -0.40 -1.96 16 29 C -0.12 -1.46 10.05 -39.58 -0.40 -1.86 16 30 C -0.12 -1.54 9.69 -39.58 -0.38 -1.93 16 31 N -0.44 -6.70 10.90 -7.50 -0.08 -6.78 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.18 1.05 8.06 -52.49 -0.42 0.63 16 36 H 0.41 6.55 8.20 -40.82 -0.33 6.21 16 37 H 0.05 1.49 7.27 -51.93 -0.38 1.11 16 38 H 0.05 1.48 7.51 -51.93 -0.39 1.09 16 39 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 40 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.03 0.54 6.63 -51.93 -0.34 0.19 16 42 H 0.13 1.90 7.01 -52.49 -0.37 1.53 16 43 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 44 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 45 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 46 H 0.12 1.41 7.99 -52.49 -0.42 0.99 16 LS Contribution 384.02 15.07 5.79 5.79 Total: -1.00 -34.17 384.02 -10.74 -44.91 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: -6.29 Total: 10.44 kcal Atomic # 6 Polarization: 5.89 SS G_CDS: -4.88 Total: 1.00 kcal Atomic # 7 Polarization: -67.77 SS G_CDS: -0.43 Total: -68.20 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: 0.09 Total: -11.17 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.17 -10.74 -44.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086613670.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.659 kcal (2) G-P(sol) polarization free energy of solvation -34.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds