Wall clock time and date at job start Sat Apr 11 2020 06:05:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.40174 * 120.19616 * 2 1 4 4 C 1.35259 * 120.12369 * 180.02562 * 3 2 1 5 5 N 1.35950 * 120.64182 * 359.97157 * 4 3 2 6 6 C 1.36585 * 120.66921 * 0.02562 * 5 4 3 7 7 C 1.36282 * 120.19298 * 179.97438 * 2 1 3 8 8 N 1.33200 * 108.61008 * 179.97438 * 6 5 4 9 9 C 1.32329 * 109.81443 * 359.97438 * 8 6 5 10 10 C 1.38295 * 132.39714 * 179.97438 * 5 4 3 11 11 C 1.41812 * 126.79084 * 0.02562 * 10 5 4 12 12 O 1.21778 * 119.99669 * 354.35581 * 11 10 5 13 13 N 1.34769 * 120.00310 * 174.35410 * 11 10 5 14 14 C 1.46503 * 119.99925 * 185.14558 * 13 11 10 15 15 H 1.08995 * 110.55770 * 37.92543 * 14 13 11 16 16 C 1.54855 * 110.62433 * 161.00036 * 14 13 11 17 17 C 1.55845 * 103.44769 * 118.49182 * 16 14 13 18 18 H 1.08993 * 115.56266 * 158.81156 * 17 16 14 19 19 C 1.55849 * 105.05867 * 288.17447 * 17 16 14 20 20 C 1.54853 * 103.44768 * 71.82713 * 19 17 16 21 21 C 1.55841 * 110.62488 * 275.02261 * 14 13 11 22 22 H 1.09003 * 115.55932 * 82.70462 * 21 14 13 23 23 N 1.50241 * 101.04891 * 32.93471 * 17 16 14 24 24 C 1.36932 * 130.84120 * 126.01741 * 23 17 16 25 25 H 1.07994 * 120.00397 * 180.02562 * 24 23 17 26 26 C 1.38819 * 119.99702 * 0.02562 * 24 23 17 27 27 N 1.31617 * 119.99937 * 359.97438 * 26 24 23 28 28 Si 1.86798 * 120.00114 * 180.02562 * 26 24 23 29 29 H 1.48505 * 109.47146 * 359.97438 * 28 26 24 30 30 H 1.48502 * 109.47343 * 119.99646 * 28 26 24 31 31 H 1.48501 * 109.47013 * 239.99966 * 28 26 24 32 32 H 1.09001 * 109.46797 * 90.00373 * 1 2 3 33 33 H 1.09002 * 109.47238 * 210.00132 * 1 2 3 34 34 H 1.08996 * 109.47035 * 330.00700 * 1 2 3 35 35 H 1.07995 * 119.93460 * 359.97351 * 3 2 1 36 36 H 1.08005 * 119.67693 * 179.97438 * 4 3 2 37 37 H 1.07997 * 120.30923 * 0.04479 * 7 2 1 38 38 H 1.08002 * 125.89031 * 179.97438 * 9 8 6 39 39 H 0.96998 * 120.00433 * 5.14778 * 13 11 10 40 40 H 1.09004 * 110.62295 * 236.97658 * 16 14 13 41 41 H 1.08995 * 110.62869 * 359.97438 * 16 14 13 42 42 H 1.09000 * 110.62548 * 190.31009 * 19 17 16 43 43 H 1.08996 * 110.62654 * 313.16939 * 19 17 16 44 44 H 1.09001 * 110.62497 * 241.50737 * 20 19 17 45 45 H 1.08994 * 110.63359 * 118.48907 * 20 19 17 46 46 H 0.97000 * 120.00009 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2120 1.2115 0.0000 4 6 3.5646 1.2098 -0.0005 5 7 4.2560 0.0393 -0.0005 6 6 3.5988 -1.1581 -0.0004 7 6 2.1924 -1.1779 0.0005 8 7 4.5009 -2.1381 -0.0009 9 6 5.7207 -1.6250 -0.0019 10 6 5.6096 -0.2442 -0.0014 11 6 6.6737 0.6933 -0.0022 12 8 6.4366 1.8833 -0.1058 13 7 7.9472 0.2673 0.1118 14 6 9.0374 1.2395 0.2245 15 1 8.7314 2.0886 0.8356 16 6 10.3060 0.5710 0.8092 17 6 11.3588 0.7344 -0.3282 18 1 12.4012 0.6655 -0.0177 19 6 10.9077 -0.2570 -1.4429 20 6 9.6392 0.4114 -2.0277 21 6 9.4964 1.7156 -1.1866 22 1 8.8987 2.5110 -1.6320 23 7 10.9378 2.0480 -0.9237 24 6 11.6488 3.1952 -1.1551 25 1 11.1629 4.0513 -1.5993 26 6 12.9941 3.2576 -0.8187 27 7 13.5861 2.2144 -0.2769 28 14 13.9640 4.8227 -1.1338 29 1 13.0740 5.8419 -1.7459 30 1 14.4996 5.3402 0.1510 31 1 15.0894 4.5302 -2.0574 32 1 -0.3633 -0.0001 -1.0277 33 1 -0.3634 -0.8900 0.5139 34 1 -0.3633 0.8900 0.5137 35 1 1.6742 2.1480 -0.0004 36 1 4.1005 2.1475 -0.0009 37 1 1.6606 -2.1179 0.0002 38 1 6.6436 -2.1860 -0.0021 39 1 8.1420 -0.6828 0.1192 40 1 10.6318 1.0890 1.7112 41 1 10.1239 -0.4836 1.0157 42 1 11.6788 -0.3518 -2.2074 43 1 10.6696 -1.2315 -1.0166 44 1 8.7691 -0.2308 -1.8910 45 1 9.7811 0.6481 -3.0821 46 1 14.5263 2.2579 -0.0423 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001095455988.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:35 Heat of formation + Delta-G solvation = 103.405662 kcal Electronic energy + Delta-G solvation = -29406.588771 eV Core-core repulsion = 25491.879095 eV Total energy + Delta-G solvation = -3914.709676 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.11794 -39.98927 -38.41691 -37.87750 -34.60978 -33.88431 -32.40074 -31.18404 -30.28966 -29.33592 -29.05072 -28.12995 -26.76989 -24.32249 -23.95686 -23.43413 -21.73894 -21.32965 -20.71612 -19.55349 -18.71527 -18.15471 -17.17217 -16.93211 -16.63205 -16.35850 -15.41291 -15.31903 -15.05691 -14.79073 -14.75664 -14.18354 -14.12123 -13.90518 -13.71501 -13.65665 -12.94638 -12.50731 -12.33711 -12.27462 -12.11306 -12.01445 -11.77856 -11.51152 -11.05576 -10.92774 -10.89584 -10.87807 -10.84554 -10.56053 -10.21803 -10.07266 -9.88393 -9.75778 -9.40566 -9.25943 -9.17534 -8.94075 -8.59836 -8.03285 -6.91596 -5.73275 -3.11025 0.43388 0.58470 2.13048 2.17703 3.17784 3.38756 3.44438 3.44833 3.46950 3.55141 3.81385 4.23465 4.33774 4.44511 4.48939 4.73853 4.85254 4.91842 5.11846 5.12610 5.20362 5.25202 5.35587 5.37971 5.52156 5.56597 5.67441 5.79460 5.83943 5.89126 5.97502 6.06228 6.11992 6.17371 6.21066 6.29634 6.34012 6.53386 6.61079 6.65805 6.70253 6.81375 6.96293 6.99838 7.26533 7.46054 7.52557 7.70827 7.81249 8.16517 8.38698 9.10302 9.72692 10.53062 11.36456 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.025551 B = 0.002497 C = 0.002347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.565248 B =11212.905026 C =11926.074187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.055 4.055 3 C -0.147 4.147 4 C 0.083 3.917 5 N -0.325 5.325 6 C 0.244 3.756 7 C -0.098 4.098 8 N -0.497 5.497 9 C 0.104 3.896 10 C -0.136 4.136 11 C 0.591 3.409 12 O -0.556 6.556 13 N -0.699 5.699 14 C 0.132 3.868 15 H 0.082 0.918 16 C -0.141 4.141 17 C 0.154 3.846 18 H 0.155 0.845 19 C -0.137 4.137 20 C -0.130 4.130 21 C 0.129 3.871 22 H 0.086 0.914 23 N -0.590 5.590 24 C -0.208 4.208 25 H 0.079 0.921 26 C -0.013 4.013 27 N -0.923 5.923 28 Si 0.916 3.084 29 H -0.280 1.280 30 H -0.291 1.291 31 H -0.291 1.291 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.155 0.845 36 H 0.179 0.821 37 H 0.153 0.847 38 H 0.191 0.809 39 H 0.396 0.604 40 H 0.067 0.933 41 H 0.056 0.944 42 H 0.055 0.945 43 H 0.046 0.954 44 H 0.051 0.949 45 H 0.050 0.950 46 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.968 -8.257 1.944 24.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.062 4.062 3 C -0.168 4.168 4 C -0.041 4.041 5 N 0.005 4.995 6 C 0.004 3.996 7 C -0.118 4.118 8 N -0.216 5.216 9 C -0.056 4.056 10 C -0.250 4.250 11 C 0.379 3.621 12 O -0.436 6.436 13 N -0.349 5.349 14 C 0.026 3.974 15 H 0.100 0.900 16 C -0.181 4.181 17 C 0.047 3.953 18 H 0.172 0.828 19 C -0.176 4.176 20 C -0.170 4.170 21 C 0.020 3.980 22 H 0.104 0.896 23 N -0.311 5.311 24 C -0.336 4.336 25 H 0.097 0.903 26 C -0.208 4.208 27 N -0.572 5.572 28 Si 0.747 3.253 29 H -0.206 1.206 30 H -0.218 1.218 31 H -0.218 1.218 32 H 0.097 0.903 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.172 0.828 36 H 0.196 0.804 37 H 0.171 0.829 38 H 0.207 0.793 39 H 0.231 0.769 40 H 0.085 0.915 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.064 0.936 44 H 0.069 0.931 45 H 0.069 0.931 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -22.958 -7.961 1.895 24.372 hybrid contribution 0.811 1.145 -0.202 1.417 sum -22.146 -6.816 1.693 23.233 Atomic orbital electron populations 1.20800 0.89397 1.03588 1.03102 1.19873 0.97232 0.92023 0.97033 1.20857 0.91916 0.99518 1.04470 1.22099 0.93002 0.89810 0.99229 1.42417 1.06514 1.07606 1.42916 1.21052 0.94502 0.80328 1.03745 1.20122 0.88008 0.99770 1.03865 1.70498 0.99015 1.28739 1.23390 1.23185 0.96596 0.89445 0.96421 1.20027 0.82739 0.96328 1.25940 1.15414 0.82236 0.86954 0.77466 1.90806 1.84456 1.16911 1.51450 1.45921 1.05321 1.10415 1.73275 1.22672 0.84641 0.90490 0.99558 0.90035 1.23315 0.95879 0.98118 1.00793 1.23773 0.99617 0.83183 0.88697 0.82808 1.23042 0.96922 0.97365 1.00281 1.22896 0.97065 0.97789 0.99209 1.23193 0.87579 0.94380 0.92833 0.89608 1.46500 1.03389 1.11030 1.70135 1.19109 0.91341 0.89636 1.33556 0.90273 1.24701 0.96512 0.97956 1.01666 1.69440 1.10880 1.28511 1.48339 0.85957 0.79836 0.82116 0.77357 1.20568 1.21787 1.21821 0.90309 0.90795 0.90770 0.82751 0.80387 0.82893 0.79261 0.76921 0.91470 0.92568 0.92644 0.93555 0.93084 0.93077 0.93610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.46 10.02 36.01 0.36 -0.10 16 2 C -0.06 -0.41 5.88 -104.60 -0.62 -1.03 16 3 C -0.15 -1.18 9.68 -39.92 -0.39 -1.56 16 4 C 0.08 0.93 10.51 -16.79 -0.18 0.76 16 5 N -0.33 -4.32 2.96 -60.14 -0.18 -4.50 16 6 C 0.24 3.08 7.77 -156.06 -1.21 1.86 16 7 C -0.10 -0.90 9.75 -39.37 -0.38 -1.29 16 8 N -0.50 -6.70 11.25 -12.27 -0.14 -6.84 16 9 C 0.10 1.28 11.32 -17.23 -0.20 1.09 16 10 C -0.14 -1.93 6.83 -83.48 -0.57 -2.50 16 11 C 0.59 9.48 7.58 -14.90 -0.11 9.37 16 12 O -0.56 -10.61 15.16 5.12 0.08 -10.53 16 13 N -0.70 -10.42 3.60 -54.22 -0.19 -10.62 16 14 C 0.13 2.44 3.02 -65.43 -0.20 2.24 16 15 H 0.08 1.68 7.80 -51.93 -0.41 1.28 16 16 C -0.14 -2.62 6.20 -24.23 -0.15 -2.77 16 17 C 0.15 3.42 4.72 -62.80 -0.30 3.12 16 18 H 0.16 3.92 5.52 -51.93 -0.29 3.63 16 19 C -0.14 -2.61 6.44 -24.23 -0.16 -2.76 16 20 C -0.13 -2.41 6.33 -24.24 -0.15 -2.57 16 21 C 0.13 2.71 5.34 -62.80 -0.34 2.38 16 22 H 0.09 1.90 8.14 -51.93 -0.42 1.47 16 23 N -0.59 -14.61 2.99 -145.81 -0.44 -15.04 16 24 C -0.21 -5.73 10.59 -15.06 -0.16 -5.89 16 25 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 26 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 27 N -0.92 -26.04 10.46 55.49 0.58 -25.46 16 28 Si 0.92 22.00 29.55 -169.99 -5.02 16.98 16 29 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 30 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 31 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 32 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 33 H 0.07 0.24 8.08 -51.93 -0.42 -0.18 16 34 H 0.07 0.23 8.09 -51.93 -0.42 -0.19 16 35 H 0.15 0.76 8.06 -52.49 -0.42 0.34 16 36 H 0.18 2.09 6.82 -52.48 -0.36 1.73 16 37 H 0.15 1.08 8.06 -52.49 -0.42 0.65 16 38 H 0.19 1.68 7.38 -52.49 -0.39 1.29 16 39 H 0.40 4.78 6.83 -40.82 -0.28 4.51 16 40 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 41 H 0.06 0.86 7.33 -51.93 -0.38 0.48 16 42 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 43 H 0.05 0.74 7.82 -51.93 -0.41 0.33 16 44 H 0.05 0.82 6.50 -51.93 -0.34 0.48 16 45 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 46 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 369.92 15.07 5.57 5.57 Total: -1.00 -33.06 369.92 -10.76 -43.82 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -6.19 Total: 6.73 kcal Atomic # 6 Polarization: 4.73 SS G_CDS: -4.84 Total: -0.11 kcal Atomic # 7 Polarization: -62.10 SS G_CDS: -0.37 Total: -62.46 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: 0.08 Total: -10.53 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.06 -10.76 -43.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095455988.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.224 kcal (2) G-P(sol) polarization free energy of solvation -33.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds