Wall clock time and date at job start Sat Apr 11 2020 06:05:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.40174 * 120.19616 * 2 1 4 4 C 1.35259 * 120.12369 * 180.02562 * 3 2 1 5 5 N 1.35950 * 120.64182 * 359.97157 * 4 3 2 6 6 C 1.36585 * 120.66921 * 0.02562 * 5 4 3 7 7 C 1.36282 * 120.19298 * 179.97438 * 2 1 3 8 8 N 1.33200 * 108.61008 * 179.97438 * 6 5 4 9 9 C 1.32329 * 109.81443 * 359.97438 * 8 6 5 10 10 C 1.38295 * 132.39714 * 179.97438 * 5 4 3 11 11 C 1.41812 * 126.79084 * 0.02562 * 10 5 4 12 12 O 1.21778 * 119.99669 * 354.35581 * 11 10 5 13 13 N 1.34769 * 120.00310 * 174.35410 * 11 10 5 14 14 C 1.46503 * 119.99925 * 185.14558 * 13 11 10 15 15 H 1.08995 * 110.55770 * 37.92543 * 14 13 11 16 16 C 1.54855 * 110.62433 * 161.00036 * 14 13 11 17 17 C 1.55845 * 103.44769 * 118.49182 * 16 14 13 18 18 H 1.08993 * 115.56266 * 158.81156 * 17 16 14 19 19 C 1.55849 * 105.05867 * 288.17447 * 17 16 14 20 20 C 1.54853 * 103.44768 * 71.82713 * 19 17 16 21 21 C 1.55841 * 110.62488 * 275.02261 * 14 13 11 22 22 H 1.09003 * 115.55932 * 82.70462 * 21 14 13 23 23 N 1.50241 * 101.04891 * 32.93471 * 17 16 14 24 24 C 1.36932 * 130.84120 * 126.01741 * 23 17 16 25 25 H 1.07994 * 120.00397 * 180.02562 * 24 23 17 26 26 C 1.38819 * 119.99702 * 0.02562 * 24 23 17 27 27 N 1.31617 * 119.99937 * 359.97438 * 26 24 23 28 28 Si 1.86798 * 120.00114 * 180.02562 * 26 24 23 29 29 H 1.48505 * 109.47146 * 359.97438 * 28 26 24 30 30 H 1.48502 * 109.47343 * 119.99646 * 28 26 24 31 31 H 1.48501 * 109.47013 * 239.99966 * 28 26 24 32 32 H 1.09001 * 109.46797 * 90.00373 * 1 2 3 33 33 H 1.09002 * 109.47238 * 210.00132 * 1 2 3 34 34 H 1.08996 * 109.47035 * 330.00700 * 1 2 3 35 35 H 1.07995 * 119.93460 * 359.97351 * 3 2 1 36 36 H 1.08005 * 119.67693 * 179.97438 * 4 3 2 37 37 H 1.07997 * 120.30923 * 0.04479 * 7 2 1 38 38 H 1.08002 * 125.89031 * 179.97438 * 9 8 6 39 39 H 0.96998 * 120.00433 * 5.14778 * 13 11 10 40 40 H 1.09004 * 110.62295 * 236.97658 * 16 14 13 41 41 H 1.08995 * 110.62869 * 359.97438 * 16 14 13 42 42 H 1.09000 * 110.62548 * 190.31009 * 19 17 16 43 43 H 1.08996 * 110.62654 * 313.16939 * 19 17 16 44 44 H 1.09001 * 110.62497 * 241.50737 * 20 19 17 45 45 H 1.08994 * 110.63359 * 118.48907 * 20 19 17 46 46 H 0.97000 * 120.00009 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2120 1.2115 0.0000 4 6 3.5646 1.2098 -0.0005 5 7 4.2560 0.0393 -0.0005 6 6 3.5988 -1.1581 -0.0004 7 6 2.1924 -1.1779 0.0005 8 7 4.5009 -2.1381 -0.0009 9 6 5.7207 -1.6250 -0.0019 10 6 5.6096 -0.2442 -0.0014 11 6 6.6737 0.6933 -0.0022 12 8 6.4366 1.8833 -0.1058 13 7 7.9472 0.2673 0.1118 14 6 9.0374 1.2395 0.2245 15 1 8.7314 2.0886 0.8356 16 6 10.3060 0.5710 0.8092 17 6 11.3588 0.7344 -0.3282 18 1 12.4012 0.6655 -0.0177 19 6 10.9077 -0.2570 -1.4429 20 6 9.6392 0.4114 -2.0277 21 6 9.4964 1.7156 -1.1866 22 1 8.8987 2.5110 -1.6320 23 7 10.9378 2.0480 -0.9237 24 6 11.6488 3.1952 -1.1551 25 1 11.1629 4.0513 -1.5993 26 6 12.9941 3.2576 -0.8187 27 7 13.5861 2.2144 -0.2769 28 14 13.9640 4.8227 -1.1338 29 1 13.0740 5.8419 -1.7459 30 1 14.4996 5.3402 0.1510 31 1 15.0894 4.5302 -2.0574 32 1 -0.3633 -0.0001 -1.0277 33 1 -0.3634 -0.8900 0.5139 34 1 -0.3633 0.8900 0.5137 35 1 1.6742 2.1480 -0.0004 36 1 4.1005 2.1475 -0.0009 37 1 1.6606 -2.1179 0.0002 38 1 6.6436 -2.1860 -0.0021 39 1 8.1420 -0.6828 0.1192 40 1 10.6318 1.0890 1.7112 41 1 10.1239 -0.4836 1.0157 42 1 11.6788 -0.3518 -2.2074 43 1 10.6696 -1.2315 -1.0166 44 1 8.7691 -0.2308 -1.8910 45 1 9.7811 0.6481 -3.0821 46 1 14.5263 2.2579 -0.0423 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001095455988.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:34 Heat of formation + Delta-G solvation = 84.304965 kcal Electronic energy + Delta-G solvation = -29407.417039 eV Core-core repulsion = 25491.879095 eV Total energy + Delta-G solvation = -3915.537945 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.99741 -41.45150 -39.74844 -38.75002 -35.68137 -35.10020 -34.26613 -32.10075 -31.10171 -31.00115 -30.65483 -29.42645 -27.83929 -26.12291 -24.73218 -24.54213 -22.92650 -22.37208 -21.99556 -21.23094 -20.20483 -19.41137 -18.71701 -17.91205 -17.72865 -17.32312 -16.84819 -16.63152 -16.42028 -16.06646 -15.84797 -15.61547 -15.26908 -15.19657 -14.68795 -14.26502 -14.08462 -13.94030 -13.48941 -13.47975 -13.22584 -13.01523 -12.88711 -12.85610 -12.80659 -12.68591 -12.59978 -12.37647 -11.98862 -11.90164 -11.62160 -11.57431 -11.50914 -11.19578 -11.07086 -10.93376 -10.79585 -10.10842 -9.96684 -8.96232 -8.82345 -7.80101 -5.19201 -0.35381 -0.24709 1.22145 1.27765 1.45906 1.46067 1.55938 2.29425 2.31112 2.40911 2.51427 3.05802 3.33268 3.43640 3.52464 3.68444 3.73749 3.84604 3.96246 4.06412 4.10107 4.14403 4.29464 4.38341 4.41802 4.46199 4.61264 4.67940 4.72557 4.76306 4.80246 4.86722 4.93681 4.97180 5.07429 5.15738 5.18946 5.21482 5.25765 5.32253 5.38833 5.46033 5.51548 5.54402 5.73618 5.86408 5.89211 6.27682 6.48373 6.62863 7.05453 7.19315 7.68543 8.54794 9.26923 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.025551 B = 0.002497 C = 0.002347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.565248 B =11212.905026 C =11926.074187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.040 4.040 3 C -0.124 4.124 4 C 0.047 3.953 5 N -0.333 5.333 6 C 0.233 3.767 7 C -0.110 4.110 8 N -0.522 5.522 9 C 0.119 3.881 10 C -0.176 4.176 11 C 0.595 3.405 12 O -0.596 6.596 13 N -0.686 5.686 14 C 0.153 3.847 15 H 0.054 0.946 16 C -0.126 4.126 17 C 0.139 3.861 18 H 0.123 0.877 19 C -0.125 4.125 20 C -0.116 4.116 21 C 0.119 3.881 22 H 0.064 0.936 23 N -0.618 5.618 24 C -0.223 4.223 25 H 0.070 0.930 26 C -0.063 4.063 27 N -0.943 5.943 28 Si 0.976 3.024 29 H -0.275 1.275 30 H -0.291 1.291 31 H -0.291 1.291 32 H 0.092 0.908 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.189 0.811 36 H 0.163 0.837 37 H 0.176 0.824 38 H 0.222 0.778 39 H 0.414 0.586 40 H 0.049 0.951 41 H 0.100 0.900 42 H 0.035 0.965 43 H 0.090 0.910 44 H 0.084 0.916 45 H 0.039 0.961 46 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.074 -10.116 2.074 28.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.046 4.046 3 C -0.144 4.144 4 C -0.078 4.078 5 N -0.002 5.002 6 C -0.006 4.006 7 C -0.129 4.129 8 N -0.241 5.241 9 C -0.042 4.042 10 C -0.289 4.289 11 C 0.386 3.614 12 O -0.480 6.480 13 N -0.337 5.337 14 C 0.046 3.954 15 H 0.072 0.928 16 C -0.165 4.165 17 C 0.033 3.967 18 H 0.140 0.860 19 C -0.164 4.164 20 C -0.156 4.156 21 C 0.011 3.989 22 H 0.082 0.918 23 N -0.340 5.340 24 C -0.352 4.352 25 H 0.087 0.913 26 C -0.256 4.256 27 N -0.592 5.592 28 Si 0.805 3.195 29 H -0.200 1.200 30 H -0.218 1.218 31 H -0.218 1.218 32 H 0.111 0.889 33 H 0.105 0.895 34 H 0.108 0.892 35 H 0.206 0.794 36 H 0.181 0.819 37 H 0.193 0.807 38 H 0.239 0.761 39 H 0.253 0.747 40 H 0.068 0.932 41 H 0.118 0.882 42 H 0.054 0.946 43 H 0.109 0.891 44 H 0.102 0.898 45 H 0.058 0.942 46 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -26.103 -9.863 2.025 27.977 hybrid contribution 1.515 1.749 -0.247 2.327 sum -24.588 -8.114 1.777 25.953 Atomic orbital electron populations 1.20926 0.86333 1.05111 1.04358 1.20341 0.99171 0.90949 0.94164 1.21360 0.90667 1.01426 1.00941 1.22253 0.94289 0.89120 1.02127 1.42538 1.06411 1.08290 1.42948 1.21653 0.95730 0.80002 1.03200 1.20554 0.86753 1.01578 1.04065 1.70524 0.99535 1.29216 1.24869 1.23711 0.97514 0.88756 0.94228 1.19787 0.82836 0.96569 1.29713 1.15641 0.82749 0.86698 0.76343 1.90785 1.85004 1.18781 1.53399 1.45569 1.04214 1.10639 1.73319 1.22093 0.85560 0.90546 0.97197 0.92822 1.23145 0.94273 1.00525 0.98602 1.23703 0.99084 0.83036 0.90882 0.86028 1.22943 0.96218 0.98566 0.98670 1.22795 0.98155 0.96692 0.97914 1.23305 0.85781 0.95042 0.94754 0.91822 1.46747 1.05006 1.11287 1.70933 1.19317 0.92019 0.90662 1.33246 0.91253 1.25406 0.97310 1.00697 1.02209 1.69663 1.10662 1.29738 1.49176 0.85041 0.78344 0.79201 0.76924 1.20000 1.21826 1.21814 0.88928 0.89483 0.89159 0.79420 0.81917 0.80707 0.76116 0.74744 0.93186 0.88179 0.94625 0.89131 0.89802 0.94213 0.94096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.40 10.02 71.24 0.71 0.31 16 2 C -0.04 -0.46 5.88 -19.85 -0.12 -0.57 16 3 C -0.12 -1.68 9.68 22.05 0.21 -1.47 16 4 C 0.05 1.04 10.51 83.37 0.88 1.91 16 5 N -0.33 -8.70 2.96 -344.19 -1.02 -9.72 16 6 C 0.23 5.55 7.77 134.00 1.04 6.59 16 7 C -0.11 -1.74 9.75 22.40 0.22 -1.52 16 8 N -0.52 -13.20 11.25 -192.72 -2.17 -15.37 16 9 C 0.12 2.73 11.32 84.69 0.96 3.69 16 10 C -0.18 -4.88 6.83 39.08 0.27 -4.61 16 11 C 0.60 19.12 7.58 85.13 0.65 19.76 16 12 O -0.60 -23.70 15.16 -4.60 -0.07 -23.77 16 13 N -0.69 -19.61 3.60 -443.64 -1.60 -21.20 16 14 C 0.15 5.67 3.02 46.61 0.14 5.81 16 15 H 0.05 2.30 7.80 -2.39 -0.02 2.29 16 16 C -0.13 -4.58 6.20 32.21 0.20 -4.38 16 17 C 0.14 6.21 4.72 46.23 0.22 6.42 16 18 H 0.12 6.36 5.52 -2.39 -0.01 6.34 16 19 C -0.12 -4.58 6.44 32.21 0.21 -4.37 16 20 C -0.12 -4.20 6.33 32.21 0.20 -3.99 16 21 C 0.12 5.12 5.34 46.22 0.25 5.37 16 22 H 0.06 2.97 8.14 -2.39 -0.02 2.95 16 23 N -0.62 -31.61 2.99 -615.24 -1.84 -33.45 16 24 C -0.22 -12.78 10.59 84.04 0.89 -11.89 16 25 H 0.07 3.96 7.83 -2.91 -0.02 3.93 16 26 C -0.06 -3.60 5.50 84.86 0.47 -3.14 16 27 N -0.94 -54.85 10.46 21.65 0.23 -54.62 16 28 Si 0.98 46.53 29.55 68.60 2.03 48.56 16 29 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 30 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 31 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 32 H 0.09 0.19 8.14 -2.39 -0.02 0.17 16 33 H 0.09 0.16 8.08 -2.39 -0.02 0.15 16 34 H 0.09 0.11 8.09 -2.39 -0.02 0.09 16 35 H 0.19 1.18 8.06 -2.91 -0.02 1.16 16 36 H 0.16 4.04 6.82 -2.91 -0.02 4.02 16 37 H 0.18 1.90 8.06 -2.91 -0.02 1.88 16 38 H 0.22 3.17 7.38 -2.91 -0.02 3.15 16 39 H 0.41 8.70 6.83 -92.71 -0.63 8.07 16 40 H 0.05 1.99 8.14 -2.38 -0.02 1.97 16 41 H 0.10 2.73 7.33 -2.39 -0.02 2.71 16 42 H 0.03 1.43 8.14 -2.39 -0.02 1.42 16 43 H 0.09 2.52 7.82 -2.39 -0.02 2.51 16 44 H 0.08 2.47 6.50 -2.39 -0.02 2.45 16 45 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 46 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 Total: -1.00 -77.11 369.92 3.35 -73.76 By element: Atomic # 1 Polarization: 21.48 SS G_CDS: 0.39 Total: 21.87 kcal Atomic # 6 Polarization: 6.54 SS G_CDS: 7.39 Total: 13.93 kcal Atomic # 7 Polarization: -127.97 SS G_CDS: -6.39 Total: -134.36 kcal Atomic # 8 Polarization: -23.70 SS G_CDS: -0.07 Total: -23.77 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 2.03 Total: 48.56 kcal Total: -77.11 3.35 -73.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095455988.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.070 kcal (2) G-P(sol) polarization free energy of solvation -77.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds