Wall clock time and date at job start Sat Apr 11 2020 06:05:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.40398 * 120.22076 * 2 1 4 4 C 1.35019 * 120.44197 * 180.02562 * 3 2 1 5 5 N 1.36531 * 120.59406 * 0.02562 * 4 3 2 6 6 C 1.36257 * 132.77541 * 179.97438 * 5 4 3 7 7 N 1.30180 * 109.81918 * 180.02562 * 6 5 4 8 8 C 1.34891 * 109.73430 * 0.02562 * 7 6 5 9 9 C 1.46289 * 126.49488 * 180.02562 * 8 7 6 10 10 O 1.21773 * 119.99775 * 180.02562 * 9 8 7 11 11 N 1.34780 * 120.00044 * 0.02562 * 9 8 7 12 12 C 1.46502 * 119.99673 * 180.02562 * 11 9 8 13 13 H 1.08996 * 110.68519 * 32.65762 * 12 11 9 14 14 C 1.54847 * 110.62550 * 155.64760 * 12 11 9 15 15 C 1.55846 * 103.45061 * 118.48518 * 14 12 11 16 16 H 1.08998 * 115.56310 * 158.81062 * 15 14 12 17 17 C 1.55841 * 105.06481 * 288.17884 * 15 14 12 18 18 C 1.54857 * 103.44702 * 71.81805 * 17 15 14 19 19 C 1.55839 * 103.44305 * 0.02562 * 18 17 15 20 20 H 1.09003 * 116.12461 * 159.14884 * 19 18 17 21 21 N 1.50235 * 101.05376 * 32.93656 * 19 18 17 22 22 C 1.36939 * 130.84150 * 125.99942 * 21 19 18 23 23 H 1.07992 * 120.00327 * 190.21377 * 22 21 19 24 24 C 1.38819 * 119.99747 * 10.20464 * 22 21 19 25 25 N 1.31616 * 120.00045 * 9.00734 * 24 22 21 26 26 Si 1.86796 * 119.99886 * 189.00341 * 24 22 21 27 27 H 1.48500 * 109.46951 * 84.99049 * 26 24 22 28 28 H 1.48495 * 109.47253 * 204.99110 * 26 24 22 29 29 H 1.48505 * 109.47265 * 324.99527 * 26 24 22 30 30 C 1.37267 * 120.04048 * 0.27040 * 5 4 3 31 31 C 1.36330 * 120.22199 * 180.02562 * 2 1 3 32 32 H 1.09008 * 109.47440 * 89.99783 * 1 2 3 33 33 H 1.08996 * 109.47738 * 209.99890 * 1 2 3 34 34 H 1.09000 * 109.47523 * 330.00274 * 1 2 3 35 35 H 1.08003 * 119.77922 * 359.97438 * 3 2 1 36 36 H 1.07998 * 119.70078 * 180.02562 * 4 3 2 37 37 H 1.07997 * 125.09033 * 0.03591 * 6 5 4 38 38 H 0.96996 * 119.99887 * 0.02562 * 11 9 8 39 39 H 1.08997 * 110.63086 * 236.98010 * 14 12 11 40 40 H 1.09004 * 110.62925 * 359.83689 * 14 12 11 41 41 H 1.08997 * 110.63062 * 190.30944 * 17 15 14 42 42 H 1.09006 * 110.62741 * 313.32922 * 17 15 14 43 43 H 1.09001 * 110.62654 * 241.50863 * 18 17 15 44 44 H 1.09001 * 110.76052 * 118.55496 * 18 17 15 45 45 H 0.97000 * 120.00048 * 179.97438 * 25 24 22 46 46 H 1.07998 * 120.39641 * 359.97438 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2136 1.2132 0.0000 4 6 3.5638 1.2184 -0.0005 5 7 4.2632 0.0458 -0.0016 6 6 5.5962 -0.2365 -0.0027 7 7 5.7742 -1.5261 -0.0040 8 6 4.5787 -2.1509 -0.0043 9 6 4.3524 -3.5962 -0.0051 10 8 3.2163 -4.0345 -0.0058 11 7 5.4013 -4.4426 -0.0050 12 6 5.1745 -5.8900 -0.0064 13 1 4.2671 -6.1370 -0.5575 14 6 6.3948 -6.6327 -0.6037 15 6 6.8884 -7.5252 0.5747 16 1 7.4975 -8.3836 0.2914 17 6 7.5298 -6.5343 1.5922 18 6 6.3094 -5.7915 2.1896 19 6 5.0968 -6.4352 1.4521 20 1 4.1281 -6.3332 1.9414 21 7 5.5895 -7.8416 1.2609 22 6 5.0280 -9.0419 1.6062 23 1 5.6080 -9.9500 1.5341 24 6 3.7133 -9.0913 2.0491 25 7 2.9517 -8.0207 1.9705 26 14 3.0250 -10.6773 2.7563 27 1 3.3648 -10.7643 4.1993 28 1 1.5490 -10.6923 2.5935 29 1 3.6140 -11.8361 2.0384 30 6 3.5947 -1.1531 -0.0077 31 6 2.1932 -1.1780 -0.0005 32 1 -0.3634 0.0000 -1.0277 33 1 -0.3634 -0.8899 0.5138 34 1 -0.3634 0.8900 0.5138 35 1 1.6736 2.1485 -0.0004 36 1 4.0953 2.1585 -0.0001 37 1 6.3867 0.4993 -0.0025 38 1 6.3062 -4.0934 -0.0041 39 1 6.0928 -7.2481 -1.4511 40 1 7.1676 -5.9241 -0.9017 41 1 8.0674 -7.0768 2.3698 42 1 8.1926 -5.8354 1.0819 43 1 6.3670 -4.7243 1.9756 44 1 6.2403 -5.9633 3.2637 45 1 2.0330 -8.0553 2.2796 46 1 1.6633 -2.1191 -0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001095652480.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:42 Heat of formation + Delta-G solvation = 101.700225 kcal Electronic energy + Delta-G solvation = -29670.035075 eV Core-core repulsion = 25755.251445 eV Total energy + Delta-G solvation = -3914.783630 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.92140 -39.63087 -38.19095 -37.66552 -34.13650 -33.55518 -32.28399 -31.31728 -29.92885 -29.25102 -28.56517 -27.83537 -26.67773 -24.26962 -23.82625 -22.88817 -22.12246 -21.07470 -20.06477 -19.39388 -18.45530 -18.15925 -16.80254 -16.74226 -16.32138 -16.12224 -15.63781 -14.99953 -14.88311 -14.52043 -14.45528 -14.30697 -14.01610 -13.76171 -13.53249 -13.28480 -12.75121 -12.29239 -12.24855 -11.95974 -11.82093 -11.76895 -11.65734 -11.46535 -10.94164 -10.82025 -10.73543 -10.69079 -10.53853 -10.49977 -10.19293 -9.98486 -9.76171 -9.53732 -9.46547 -9.24722 -9.15944 -8.81727 -8.12621 -7.56013 -6.76395 -5.61942 -2.99576 0.49519 0.94093 2.34054 2.44808 3.09392 3.46576 3.50892 3.53460 3.77899 3.97342 4.13989 4.35381 4.46103 4.48367 4.55016 4.70081 4.87443 5.20604 5.28134 5.35492 5.37261 5.42206 5.47207 5.53757 5.71145 5.76578 5.82090 5.88883 5.93921 6.10902 6.16662 6.17975 6.25165 6.29808 6.38373 6.41472 6.43942 6.65912 6.73036 6.87104 6.92902 6.97427 7.08434 7.16674 7.41200 7.57495 7.65568 7.90187 8.22177 8.30267 8.89615 9.18562 9.83230 10.66696 11.48780 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014800 B = 0.003163 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.479853 B = 8851.522936 C =10301.313731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.089 4.089 3 C -0.128 4.128 4 C 0.048 3.952 5 N -0.369 5.369 6 C 0.138 3.862 7 N -0.419 5.419 8 C -0.051 4.051 9 C 0.595 3.405 10 O -0.536 6.536 11 N -0.698 5.698 12 C 0.127 3.873 13 H 0.089 0.911 14 C -0.138 4.138 15 C 0.130 3.870 16 H 0.086 0.914 17 C -0.129 4.129 18 C -0.141 4.141 19 C 0.160 3.840 20 H 0.141 0.859 21 N -0.590 5.590 22 C -0.221 4.221 23 H 0.077 0.923 24 C -0.008 4.008 25 N -0.908 5.908 26 Si 0.911 3.089 27 H -0.290 1.290 28 H -0.291 1.291 29 H -0.282 1.282 30 C 0.076 3.924 31 C -0.066 4.066 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.149 0.851 36 H 0.168 0.832 37 H 0.215 0.785 38 H 0.398 0.602 39 H 0.062 0.938 40 H 0.056 0.944 41 H 0.052 0.948 42 H 0.049 0.951 43 H 0.052 0.948 44 H 0.050 0.950 45 H 0.254 0.746 46 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.038 22.604 -5.218 23.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.092 4.092 3 C -0.149 4.149 4 C -0.073 4.073 5 N -0.040 5.040 6 C -0.138 4.138 7 N -0.134 5.134 8 C -0.185 4.185 9 C 0.380 3.620 10 O -0.412 6.412 11 N -0.348 5.348 12 C 0.022 3.978 13 H 0.108 0.892 14 C -0.178 4.178 15 C 0.022 3.978 16 H 0.104 0.896 17 C -0.168 4.168 18 C -0.181 4.181 19 C 0.052 3.948 20 H 0.158 0.842 21 N -0.310 5.310 22 C -0.349 4.349 23 H 0.095 0.905 24 C -0.205 4.205 25 N -0.554 5.554 26 Si 0.742 3.258 27 H -0.217 1.217 28 H -0.217 1.217 29 H -0.208 1.208 30 C -0.036 4.036 31 C -0.086 4.086 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.088 0.912 35 H 0.167 0.833 36 H 0.185 0.815 37 H 0.231 0.769 38 H 0.233 0.767 39 H 0.081 0.919 40 H 0.075 0.925 41 H 0.071 0.929 42 H 0.068 0.932 43 H 0.071 0.929 44 H 0.069 0.931 45 H 0.065 0.935 46 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 1.878 21.688 -5.121 22.363 hybrid contribution -0.434 0.069 0.349 0.561 sum 1.443 21.756 -4.772 22.320 Atomic orbital electron populations 1.20768 0.89740 1.03463 1.02832 1.19936 0.97221 0.92114 0.99975 1.20798 0.92319 0.99296 1.02438 1.21603 0.93033 0.88539 1.04143 1.42991 1.08558 1.06330 1.46126 1.24976 0.82403 0.94180 1.12254 1.70053 1.25897 1.04088 1.13352 1.20767 0.87285 0.94105 1.16379 1.16483 0.85367 0.82922 0.77192 1.90859 1.22068 1.77426 1.50895 1.45943 1.08446 1.07034 1.73365 1.22734 0.98063 0.76162 1.00889 0.89244 1.23186 0.97073 0.98708 0.98857 1.22990 0.89692 0.94072 0.91035 0.89604 1.22946 0.96932 0.98034 0.98929 1.23024 0.97487 0.97863 0.99715 1.23628 0.97590 0.82310 0.91319 0.84171 1.46473 1.17326 1.01611 1.65635 1.18955 0.94273 0.84284 1.37372 0.90488 1.24802 0.95764 0.97473 1.02479 1.69708 1.07173 1.27450 1.51100 0.86152 0.78056 0.82604 0.79011 1.21713 1.21747 1.20827 1.19284 0.93259 0.85062 1.05982 1.20745 0.89816 1.00148 0.97875 0.90660 0.90624 0.91239 0.83339 0.81492 0.76857 0.76673 0.91917 0.92505 0.92946 0.93240 0.92895 0.93122 0.93517 0.82111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.81 10.03 36.00 0.36 -0.45 16 2 C -0.09 -0.87 5.89 -104.50 -0.62 -1.49 16 3 C -0.13 -0.93 9.67 -39.91 -0.39 -1.32 16 4 C 0.05 0.36 10.95 -16.60 -0.18 0.18 16 5 N -0.37 -4.14 2.94 -62.19 -0.18 -4.32 16 6 C 0.14 1.51 12.73 -89.52 -1.14 0.37 16 7 N -0.42 -6.18 10.90 -10.53 -0.11 -6.29 16 8 C -0.05 -0.86 7.05 -82.57 -0.58 -1.44 16 9 C 0.60 11.93 7.77 -13.02 -0.10 11.83 16 10 O -0.54 -12.48 15.41 5.12 0.08 -12.40 16 11 N -0.70 -13.25 3.71 -52.78 -0.20 -13.45 16 12 C 0.13 2.78 3.15 -65.41 -0.21 2.57 16 13 H 0.09 2.28 7.57 -51.93 -0.39 1.88 16 14 C -0.14 -2.65 6.20 -24.24 -0.15 -2.81 16 15 C 0.13 2.69 5.48 -62.78 -0.34 2.35 16 16 H 0.09 1.67 8.14 -51.93 -0.42 1.25 16 17 C -0.13 -2.43 6.44 -24.24 -0.16 -2.58 16 18 C -0.14 -2.98 6.32 -24.24 -0.15 -3.13 16 19 C 0.16 3.94 4.51 -62.77 -0.28 3.65 16 20 H 0.14 4.09 5.89 -51.93 -0.31 3.79 16 21 N -0.59 -15.20 2.98 -145.76 -0.43 -15.64 16 22 C -0.22 -6.24 10.55 -15.06 -0.16 -6.40 16 23 H 0.08 2.10 7.84 -52.49 -0.41 1.69 16 24 C -0.01 -0.23 5.46 -17.43 -0.10 -0.33 16 25 N -0.91 -27.48 10.75 55.49 0.60 -26.88 16 26 Si 0.91 22.62 29.56 -169.99 -5.03 17.60 16 27 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 28 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 29 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 30 C 0.08 1.13 6.72 -83.99 -0.56 0.57 16 31 C -0.07 -0.89 9.38 -39.54 -0.37 -1.26 16 32 H 0.07 0.49 8.14 -51.92 -0.42 0.06 16 33 H 0.07 0.60 8.08 -51.93 -0.42 0.18 16 34 H 0.07 0.37 8.10 -51.93 -0.42 -0.05 16 35 H 0.15 0.58 8.06 -52.48 -0.42 0.15 16 36 H 0.17 0.55 8.06 -52.49 -0.42 0.12 16 37 H 0.22 1.30 8.06 -52.49 -0.42 0.88 16 38 H 0.40 6.75 7.61 -40.82 -0.31 6.44 16 39 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.06 0.93 7.40 -51.93 -0.38 0.54 16 41 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.05 0.80 7.82 -51.93 -0.41 0.39 16 43 H 0.05 1.03 6.38 -51.93 -0.33 0.70 16 44 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 45 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 46 H 0.16 2.40 7.17 -52.49 -0.38 2.02 16 LS Contribution 372.93 15.07 5.62 5.62 Total: -1.00 -35.22 372.93 -11.06 -46.28 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: -6.28 Total: 9.17 kcal Atomic # 6 Polarization: 5.44 SS G_CDS: -5.13 Total: 0.31 kcal Atomic # 7 Polarization: -66.25 SS G_CDS: -0.33 Total: -66.58 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: 0.08 Total: -12.40 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.03 Total: 17.60 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -35.22 -11.06 -46.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095652480.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.980 kcal (2) G-P(sol) polarization free energy of solvation -35.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds