Wall clock time and date at job start Sat Apr 11 2020 06:05:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.40398 * 120.22076 * 2 1 4 4 C 1.35019 * 120.44197 * 180.02562 * 3 2 1 5 5 N 1.36531 * 120.59406 * 0.02562 * 4 3 2 6 6 C 1.36257 * 132.77541 * 179.97438 * 5 4 3 7 7 N 1.30180 * 109.81918 * 180.02562 * 6 5 4 8 8 C 1.34891 * 109.73430 * 0.02562 * 7 6 5 9 9 C 1.46289 * 126.49488 * 180.02562 * 8 7 6 10 10 O 1.21773 * 119.99775 * 180.02562 * 9 8 7 11 11 N 1.34780 * 120.00044 * 0.02562 * 9 8 7 12 12 C 1.46502 * 119.99673 * 180.02562 * 11 9 8 13 13 H 1.08996 * 110.68519 * 32.65762 * 12 11 9 14 14 C 1.54847 * 110.62550 * 155.64760 * 12 11 9 15 15 C 1.55846 * 103.45061 * 118.48518 * 14 12 11 16 16 H 1.08998 * 115.56310 * 158.81062 * 15 14 12 17 17 C 1.55841 * 105.06481 * 288.17884 * 15 14 12 18 18 C 1.54857 * 103.44702 * 71.81805 * 17 15 14 19 19 C 1.55839 * 103.44305 * 0.02562 * 18 17 15 20 20 H 1.09003 * 116.12461 * 159.14884 * 19 18 17 21 21 N 1.50235 * 101.05376 * 32.93656 * 19 18 17 22 22 C 1.36939 * 130.84150 * 125.99942 * 21 19 18 23 23 H 1.07992 * 120.00327 * 190.21377 * 22 21 19 24 24 C 1.38819 * 119.99747 * 10.20464 * 22 21 19 25 25 N 1.31616 * 120.00045 * 9.00734 * 24 22 21 26 26 Si 1.86796 * 119.99886 * 189.00341 * 24 22 21 27 27 H 1.48500 * 109.46951 * 84.99049 * 26 24 22 28 28 H 1.48495 * 109.47253 * 204.99110 * 26 24 22 29 29 H 1.48505 * 109.47265 * 324.99527 * 26 24 22 30 30 C 1.37267 * 120.04048 * 0.27040 * 5 4 3 31 31 C 1.36330 * 120.22199 * 180.02562 * 2 1 3 32 32 H 1.09008 * 109.47440 * 89.99783 * 1 2 3 33 33 H 1.08996 * 109.47738 * 209.99890 * 1 2 3 34 34 H 1.09000 * 109.47523 * 330.00274 * 1 2 3 35 35 H 1.08003 * 119.77922 * 359.97438 * 3 2 1 36 36 H 1.07998 * 119.70078 * 180.02562 * 4 3 2 37 37 H 1.07997 * 125.09033 * 0.03591 * 6 5 4 38 38 H 0.96996 * 119.99887 * 0.02562 * 11 9 8 39 39 H 1.08997 * 110.63086 * 236.98010 * 14 12 11 40 40 H 1.09004 * 110.62925 * 359.83689 * 14 12 11 41 41 H 1.08997 * 110.63062 * 190.30944 * 17 15 14 42 42 H 1.09006 * 110.62741 * 313.32922 * 17 15 14 43 43 H 1.09001 * 110.62654 * 241.50863 * 18 17 15 44 44 H 1.09001 * 110.76052 * 118.55496 * 18 17 15 45 45 H 0.97000 * 120.00048 * 179.97438 * 25 24 22 46 46 H 1.07998 * 120.39641 * 359.97438 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2136 1.2132 0.0000 4 6 3.5638 1.2184 -0.0005 5 7 4.2632 0.0458 -0.0016 6 6 5.5962 -0.2365 -0.0027 7 7 5.7742 -1.5261 -0.0040 8 6 4.5787 -2.1509 -0.0043 9 6 4.3524 -3.5962 -0.0051 10 8 3.2163 -4.0345 -0.0058 11 7 5.4013 -4.4426 -0.0050 12 6 5.1745 -5.8900 -0.0064 13 1 4.2671 -6.1370 -0.5575 14 6 6.3948 -6.6327 -0.6037 15 6 6.8884 -7.5252 0.5747 16 1 7.4975 -8.3836 0.2914 17 6 7.5298 -6.5343 1.5922 18 6 6.3094 -5.7915 2.1896 19 6 5.0968 -6.4352 1.4521 20 1 4.1281 -6.3332 1.9414 21 7 5.5895 -7.8416 1.2609 22 6 5.0280 -9.0419 1.6062 23 1 5.6080 -9.9500 1.5341 24 6 3.7133 -9.0913 2.0491 25 7 2.9517 -8.0207 1.9705 26 14 3.0250 -10.6773 2.7563 27 1 3.3648 -10.7643 4.1993 28 1 1.5490 -10.6923 2.5935 29 1 3.6140 -11.8361 2.0384 30 6 3.5947 -1.1531 -0.0077 31 6 2.1932 -1.1780 -0.0005 32 1 -0.3634 0.0000 -1.0277 33 1 -0.3634 -0.8899 0.5138 34 1 -0.3634 0.8900 0.5138 35 1 1.6736 2.1485 -0.0004 36 1 4.0953 2.1585 -0.0001 37 1 6.3867 0.4993 -0.0025 38 1 6.3062 -4.0934 -0.0041 39 1 6.0928 -7.2481 -1.4511 40 1 7.1676 -5.9241 -0.9017 41 1 8.0674 -7.0768 2.3698 42 1 8.1926 -5.8354 1.0819 43 1 6.3670 -4.7243 1.9756 44 1 6.2403 -5.9633 3.2637 45 1 2.0330 -8.0553 2.2796 46 1 1.6633 -2.1191 -0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001095652480.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:41 Heat of formation + Delta-G solvation = 79.785237 kcal Electronic energy + Delta-G solvation = -29670.985380 eV Core-core repulsion = 25755.251445 eV Total energy + Delta-G solvation = -3915.733935 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -43.82965 -41.32012 -39.60044 -38.72239 -35.33648 -35.00183 -34.27040 -32.19665 -31.08506 -30.87526 -30.29150 -29.40196 -27.76099 -26.13577 -24.83238 -24.01109 -22.99486 -22.64781 -21.63291 -21.02840 -20.15158 -19.25255 -18.78281 -17.58348 -17.53137 -17.08804 -16.91489 -16.74260 -16.26349 -16.04616 -15.85772 -15.46455 -15.21366 -15.14435 -14.72295 -14.37054 -14.04753 -13.84804 -13.53987 -13.43691 -13.19140 -12.96123 -12.88030 -12.78886 -12.67013 -12.59793 -12.48617 -12.32207 -11.98501 -11.88274 -11.67630 -11.58537 -11.43368 -11.22204 -11.01207 -10.93293 -10.76530 -10.33949 -9.87296 -8.84714 -8.49371 -7.79486 -5.18961 -0.37692 0.11060 1.33547 1.43734 1.47188 1.50988 1.55097 2.28575 2.34589 2.52176 2.62797 3.34553 3.38886 3.43916 3.55514 3.70896 3.82997 3.84409 3.99146 4.12844 4.14006 4.16508 4.29664 4.43389 4.47165 4.53247 4.65701 4.69710 4.74292 4.76247 4.76992 4.83946 5.00240 5.03291 5.09545 5.11941 5.14089 5.24926 5.32075 5.39487 5.41740 5.45869 5.54540 5.55641 5.76906 5.86718 6.16960 6.20132 6.52043 6.84441 6.99317 7.40973 7.70197 8.58647 9.29763 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014800 B = 0.003163 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.479853 B = 8851.522936 C =10301.313731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.051 4.051 3 C -0.138 4.138 4 C 0.070 3.930 5 N -0.371 5.371 6 C 0.159 3.841 7 N -0.442 5.442 8 C -0.115 4.115 9 C 0.589 3.411 10 O -0.590 6.590 11 N -0.687 5.687 12 C 0.141 3.859 13 H 0.036 0.964 14 C -0.124 4.124 15 C 0.126 3.874 16 H 0.106 0.894 17 C -0.113 4.113 18 C -0.130 4.130 19 C 0.145 3.855 20 H 0.085 0.915 21 N -0.617 5.617 22 C -0.225 4.225 23 H 0.086 0.914 24 C -0.073 4.073 25 N -0.945 5.945 26 Si 0.978 3.022 27 H -0.287 1.287 28 H -0.300 1.300 29 H -0.265 1.265 30 C 0.079 3.921 31 C -0.135 4.135 32 H 0.089 0.911 33 H 0.059 0.941 34 H 0.102 0.898 35 H 0.198 0.802 36 H 0.227 0.773 37 H 0.270 0.730 38 H 0.412 0.588 39 H 0.058 0.942 40 H 0.098 0.902 41 H 0.058 0.942 42 H 0.092 0.908 43 H 0.068 0.932 44 H 0.032 0.968 45 H 0.243 0.757 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.674 26.990 -5.780 27.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.055 4.055 3 C -0.158 4.158 4 C -0.050 4.050 5 N -0.042 5.042 6 C -0.118 4.118 7 N -0.156 5.156 8 C -0.246 4.246 9 C 0.378 3.622 10 O -0.471 6.471 11 N -0.338 5.338 12 C 0.034 3.966 13 H 0.054 0.946 14 C -0.164 4.164 15 C 0.020 3.980 16 H 0.124 0.876 17 C -0.152 4.152 18 C -0.170 4.170 19 C 0.037 3.963 20 H 0.102 0.898 21 N -0.339 5.339 22 C -0.354 4.354 23 H 0.104 0.896 24 C -0.266 4.266 25 N -0.593 5.593 26 Si 0.806 3.194 27 H -0.214 1.214 28 H -0.227 1.227 29 H -0.190 1.190 30 C -0.036 4.036 31 C -0.155 4.155 32 H 0.107 0.893 33 H 0.078 0.922 34 H 0.121 0.879 35 H 0.215 0.785 36 H 0.244 0.756 37 H 0.286 0.714 38 H 0.249 0.751 39 H 0.077 0.923 40 H 0.117 0.883 41 H 0.076 0.924 42 H 0.110 0.890 43 H 0.086 0.914 44 H 0.051 0.949 45 H 0.052 0.948 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 4.598 26.060 -5.700 27.069 hybrid contribution -1.369 -0.970 0.493 1.749 sum 3.229 25.090 -5.207 25.827 Atomic orbital electron populations 1.20917 0.88149 1.04307 1.03888 1.20425 0.98542 0.91960 0.94569 1.21373 0.92672 0.99650 1.02119 1.22742 0.93546 0.88863 0.99897 1.43261 1.08699 1.06251 1.45977 1.26043 0.83132 0.93830 1.08804 1.69898 1.25137 1.06031 1.14530 1.20133 0.89349 0.92480 1.22665 1.17055 0.84594 0.84790 0.75809 1.90815 1.24080 1.78803 1.53388 1.45682 1.09006 1.05591 1.73473 1.22207 0.97501 0.78251 0.98636 0.94559 1.23109 0.96425 0.98819 0.98001 1.23315 0.87873 0.95345 0.91419 0.87640 1.22871 0.95928 0.97902 0.98546 1.22880 0.97021 0.98828 0.98249 1.23356 0.96686 0.83161 0.93122 0.89764 1.46760 1.19332 1.01162 1.66686 1.19390 0.94399 0.85671 1.35944 0.89581 1.25677 0.96461 1.00580 1.03887 1.70023 1.06768 1.29652 1.52887 0.85096 0.76612 0.79416 0.78242 1.21428 1.22718 1.19011 1.19294 0.93531 0.86300 1.04441 1.20545 0.90023 1.00436 1.04501 0.89302 0.92233 0.87931 0.78456 0.75648 0.71446 0.75097 0.92322 0.88331 0.92361 0.89006 0.91355 0.94931 0.94800 0.85988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.54 10.03 71.23 0.71 -0.83 16 2 C -0.05 -0.93 5.89 -19.78 -0.12 -1.05 16 3 C -0.14 -1.35 9.67 22.05 0.21 -1.14 16 4 C 0.07 0.66 10.95 83.22 0.91 1.58 16 5 N -0.37 -7.26 2.94 -350.67 -1.03 -8.29 16 6 C 0.16 2.95 12.73 179.96 2.29 5.24 16 7 N -0.44 -12.68 10.90 -187.24 -2.04 -14.72 16 8 C -0.12 -4.17 7.05 41.23 0.29 -3.88 16 9 C 0.59 26.14 7.77 86.34 0.67 26.81 16 10 O -0.59 -31.55 15.41 -4.58 -0.07 -31.62 16 11 N -0.69 -27.76 3.71 -439.09 -1.63 -29.39 16 12 C 0.14 6.60 3.15 46.63 0.15 6.75 16 13 H 0.04 2.06 7.57 -2.39 -0.02 2.04 16 14 C -0.12 -4.72 6.20 32.21 0.20 -4.52 16 15 C 0.13 5.12 5.48 46.22 0.25 5.37 16 16 H 0.11 3.86 8.14 -2.39 -0.02 3.84 16 17 C -0.11 -4.03 6.44 32.21 0.21 -3.82 16 18 C -0.13 -5.61 6.32 32.21 0.20 -5.41 16 19 C 0.14 7.67 4.51 46.25 0.21 7.88 16 20 H 0.08 5.47 5.89 -2.39 -0.01 5.46 16 21 N -0.62 -33.04 2.98 -615.07 -1.83 -34.87 16 22 C -0.23 -13.17 10.55 84.03 0.89 -12.29 16 23 H 0.09 4.74 7.84 -2.91 -0.02 4.72 16 24 C -0.07 -4.43 5.46 84.86 0.46 -3.97 16 25 N -0.94 -62.08 10.75 21.65 0.23 -61.85 16 26 Si 0.98 48.75 29.56 68.60 2.03 50.78 16 27 H -0.29 -14.04 7.11 99.48 0.71 -13.34 16 28 H -0.30 -15.25 7.11 99.48 0.71 -14.54 16 29 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 30 C 0.08 2.42 6.72 39.23 0.26 2.68 16 31 C -0.14 -3.97 9.38 22.30 0.21 -3.76 16 32 H 0.09 1.01 8.14 -2.38 -0.02 0.99 16 33 H 0.06 1.01 8.08 -2.39 -0.02 0.99 16 34 H 0.10 0.72 8.10 -2.39 -0.02 0.70 16 35 H 0.20 0.08 8.06 -2.91 -0.02 0.06 16 36 H 0.23 -0.48 8.06 -2.91 -0.02 -0.50 16 37 H 0.27 1.57 8.06 -2.91 -0.02 1.55 16 38 H 0.41 14.06 7.61 -92.71 -0.71 13.36 16 39 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 40 H 0.10 2.94 7.40 -2.39 -0.02 2.93 16 41 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 42 H 0.09 2.54 7.82 -2.38 -0.02 2.52 16 43 H 0.07 2.69 6.38 -2.39 -0.02 2.67 16 44 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 45 H 0.24 15.73 8.31 -92.71 -0.77 14.96 16 46 H 0.12 4.41 7.17 -2.91 -0.02 4.39 16 Total: -1.00 -91.40 372.93 3.99 -87.42 By element: Atomic # 1 Polarization: 26.59 SS G_CDS: 0.31 Total: 26.90 kcal Atomic # 6 Polarization: 7.63 SS G_CDS: 8.02 Total: 15.65 kcal Atomic # 7 Polarization: -142.83 SS G_CDS: -6.30 Total: -149.13 kcal Atomic # 8 Polarization: -31.55 SS G_CDS: -0.07 Total: -31.62 kcal Atomic # 14 Polarization: 48.75 SS G_CDS: 2.03 Total: 50.78 kcal Total: -91.40 3.99 -87.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095652480.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.201 kcal (2) G-P(sol) polarization free energy of solvation -91.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.416 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds