Wall clock time and date at job start Sat Apr 11 2020 06:05:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30176 * 125.09279 * 2 1 4 4 C 1.34892 * 109.73723 * 180.17639 * 3 2 1 5 5 C 1.46279 * 126.50143 * 179.81740 * 4 3 2 6 6 O 1.21769 * 120.00450 * 179.68754 * 5 4 3 7 7 N 1.34783 * 119.99862 * 359.69076 * 5 4 3 8 8 C 1.46493 * 120.00115 * 179.97438 * 7 5 4 9 9 H 1.09000 * 110.55701 * 36.97753 * 8 7 5 10 10 C 1.54851 * 110.76618 * 159.97220 * 8 7 5 11 11 C 1.55839 * 103.44964 * 118.55285 * 10 8 7 12 12 H 1.09005 * 115.56127 * 158.80954 * 11 10 8 13 13 C 1.55846 * 105.06756 * 287.42647 * 11 10 8 14 14 C 1.56687 * 102.59842 * 72.29854 * 13 11 10 15 15 C 1.55848 * 103.60118 * 359.66599 * 14 13 11 16 16 H 1.08994 * 115.56258 * 159.79528 * 15 14 13 17 17 N 1.50241 * 101.05026 * 32.94099 * 11 10 8 18 18 C 1.36936 * 130.83931 * 126.04815 * 17 11 10 19 19 H 1.08003 * 119.99774 * 179.97438 * 18 17 11 20 20 C 1.38806 * 119.99928 * 359.97438 * 18 17 11 21 21 N 1.31620 * 120.00545 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 120.00076 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.46751 * 90.00104 * 22 20 18 24 24 H 1.48497 * 109.47714 * 210.00173 * 22 20 18 25 25 H 1.48505 * 109.47072 * 330.00654 * 22 20 18 26 26 C 1.40146 * 106.99901 * 359.56102 * 4 3 2 27 27 C 1.40185 * 133.57316 * 180.28574 * 26 4 3 28 28 C 1.36332 * 119.19565 * 179.97438 * 27 26 4 29 29 C 1.40392 * 119.56178 * 359.97438 * 28 27 26 30 30 C 1.35017 * 120.44295 * 0.02562 * 29 28 27 31 31 N 1.36249 * 125.08580 * 179.68327 * 2 1 3 32 32 H 1.09003 * 109.47027 * 270.31971 * 1 2 3 33 33 H 1.09004 * 109.46877 * 30.31277 * 1 2 3 34 34 H 1.08998 * 109.47197 * 150.31879 * 1 2 3 35 35 H 0.97006 * 119.99617 * 0.02562 * 7 5 4 36 36 H 1.08998 * 110.63000 * 237.04980 * 10 8 7 37 37 H 1.09007 * 110.62057 * 359.90398 * 10 8 7 38 38 H 1.08999 * 110.62784 * 190.30957 * 13 11 10 39 39 H 1.09000 * 110.62215 * 313.17446 * 13 11 10 40 40 H 1.08990 * 110.35684 * 241.22163 * 14 13 11 41 41 H 1.09001 * 110.74970 * 118.30077 * 14 13 11 42 42 H 0.96993 * 120.00574 * 179.97438 * 21 20 18 43 43 H 1.07996 * 120.40307 * 359.97438 * 27 26 4 44 44 H 1.08003 * 120.21606 * 180.02562 * 28 27 26 45 45 H 1.08003 * 119.77725 * 180.02562 * 29 28 27 46 46 H 1.07997 * 119.70603 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2554 1.0651 0.0000 4 6 3.5562 0.7079 -0.0039 5 6 4.7066 1.6114 -0.0090 6 8 5.8368 1.1582 -0.0064 7 7 4.5156 2.9456 -0.0164 8 6 5.6677 3.8504 -0.0208 9 1 6.4726 3.4423 -0.6322 10 6 5.2594 5.2566 -0.5246 11 6 5.5635 6.1803 0.6932 12 1 5.6937 7.2373 0.4608 13 6 4.4534 5.8531 1.7370 14 6 4.8734 4.4328 2.2485 15 6 6.1629 4.1160 1.4328 16 1 6.8108 3.3486 1.8565 17 7 6.7569 5.4885 1.2885 18 6 8.0023 5.9629 1.6031 19 1 8.7400 5.3006 2.0317 20 6 8.3166 7.2948 1.3711 21 7 7.4178 8.1018 0.8483 22 14 10.0154 7.9422 1.8009 23 1 10.9160 7.7838 0.6308 24 1 9.9208 9.3796 2.1618 25 1 10.5599 7.1777 2.9517 26 6 3.5964 -0.6929 0.0038 27 6 4.6393 -1.6296 0.0094 28 6 4.3389 -2.9594 0.0170 29 6 2.9951 -3.3659 0.0198 30 6 2.0033 -2.4498 0.0143 31 7 2.2902 -1.1149 0.0062 32 1 -0.3633 0.0057 1.0277 33 1 -0.3633 0.8872 -0.5187 34 1 -0.3633 -0.8928 -0.5089 35 1 3.6153 3.3066 -0.0180 36 1 5.8617 5.5459 -1.3858 37 1 4.1985 5.2822 -0.7736 38 1 4.4691 6.5751 2.5533 39 1 3.4728 5.8340 1.2614 40 1 4.0923 3.7048 2.0299 41 1 5.0904 4.4556 3.3165 42 1 7.6373 9.0326 0.6866 43 1 5.6684 -1.3019 0.0076 44 1 5.1294 -3.6953 0.0218 45 1 2.7531 -4.4184 0.0263 46 1 0.9736 -2.7757 0.0161 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001095757883.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:51 Heat of formation + Delta-G solvation = 101.690680 kcal Electronic energy + Delta-G solvation = -29539.654777 eV Core-core repulsion = 25624.870733 eV Total energy + Delta-G solvation = -3914.784044 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -43.08405 -39.72800 -38.13850 -37.63385 -33.79425 -33.74298 -32.21298 -31.84066 -30.39914 -29.11447 -28.94206 -27.84583 -26.72124 -24.35454 -24.11905 -23.42938 -21.41860 -21.21304 -20.35099 -19.39642 -18.45886 -17.97929 -17.15787 -16.86227 -16.44182 -16.27334 -15.82720 -15.31181 -14.91346 -14.69900 -14.62825 -14.01977 -13.98639 -13.64468 -13.50141 -13.41778 -12.94091 -12.53178 -12.23974 -12.17395 -11.97399 -11.90523 -11.63211 -11.37519 -10.97646 -10.86396 -10.82399 -10.79176 -10.74002 -10.64626 -10.12801 -10.01580 -9.76828 -9.63219 -9.62796 -9.27031 -9.15125 -8.85099 -8.38198 -7.66513 -6.82395 -5.65031 -3.02759 0.38962 0.82248 2.18508 2.25813 3.00829 3.44679 3.49382 3.51098 3.58988 3.76970 4.00857 4.11149 4.31865 4.48130 4.51993 4.63860 4.75696 5.02099 5.11199 5.15482 5.31256 5.35431 5.47159 5.48461 5.51119 5.67927 5.76221 5.91136 5.94888 5.96116 6.05168 6.16933 6.22654 6.25362 6.25853 6.44654 6.46185 6.66285 6.74364 6.81345 6.82983 6.91988 7.08863 7.11930 7.37556 7.47812 7.60718 7.85375 8.06676 8.25495 8.66317 9.18267 9.80615 10.62323 11.44522 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.022348 B = 0.002678 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.632368 B =10451.545285 C =11298.725529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.164 3.836 3 N -0.414 5.414 4 C -0.049 4.049 5 C 0.599 3.401 6 O -0.548 6.548 7 N -0.695 5.695 8 C 0.128 3.872 9 H 0.082 0.918 10 C -0.141 4.141 11 C 0.154 3.846 12 H 0.153 0.847 13 C -0.137 4.137 14 C -0.131 4.131 15 C 0.129 3.871 16 H 0.085 0.915 17 N -0.589 5.589 18 C -0.207 4.207 19 H 0.079 0.921 20 C -0.014 4.014 21 N -0.924 5.924 22 Si 0.916 3.084 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.282 1.282 26 C 0.070 3.930 27 C -0.062 4.062 28 C -0.122 4.122 29 C -0.130 4.130 30 C 0.045 3.955 31 N -0.363 5.363 32 H 0.081 0.919 33 H 0.095 0.905 34 H 0.072 0.928 35 H 0.402 0.598 36 H 0.065 0.935 37 H 0.055 0.945 38 H 0.054 0.946 39 H 0.048 0.952 40 H 0.052 0.948 41 H 0.049 0.951 42 H 0.253 0.747 43 H 0.161 0.839 44 H 0.141 0.859 45 H 0.150 0.850 46 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.444 -22.092 -2.982 27.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.093 4.093 3 N -0.130 5.130 4 C -0.184 4.184 5 C 0.385 3.615 6 O -0.427 6.427 7 N -0.344 5.344 8 C 0.022 3.978 9 H 0.100 0.900 10 C -0.181 4.181 11 C 0.048 3.952 12 H 0.170 0.830 13 C -0.177 4.177 14 C -0.171 4.171 15 C 0.020 3.980 16 H 0.103 0.897 17 N -0.310 5.310 18 C -0.335 4.335 19 H 0.097 0.903 20 C -0.209 4.209 21 N -0.573 5.573 22 Si 0.747 3.253 23 H -0.217 1.217 24 H -0.218 1.218 25 H -0.208 1.208 26 C -0.042 4.042 27 C -0.081 4.081 28 C -0.143 4.143 29 C -0.151 4.151 30 C -0.076 4.076 31 N -0.034 5.034 32 H 0.100 0.900 33 H 0.113 0.887 34 H 0.091 0.909 35 H 0.238 0.762 36 H 0.084 0.916 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.066 0.934 40 H 0.071 0.929 41 H 0.068 0.932 42 H 0.064 0.936 43 H 0.179 0.821 44 H 0.159 0.841 45 H 0.168 0.832 46 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -15.804 -21.254 -2.948 26.650 hybrid contribution 0.574 -0.511 0.251 0.808 sum -15.230 -21.765 -2.698 26.701 Atomic orbital electron populations 1.20181 0.83950 1.04216 1.03722 1.23325 0.95653 0.78906 1.11381 1.70031 1.01528 1.27430 1.14005 1.20689 0.91597 0.89722 1.16352 1.16472 0.86199 0.82006 0.76812 1.90796 1.23100 1.76838 1.51940 1.46000 1.10676 1.04991 1.72775 1.22645 0.86784 0.88852 0.99472 0.89977 1.23295 0.99004 0.94828 1.00929 1.23711 0.83745 0.99605 0.88185 0.82984 1.23345 0.97964 0.96072 1.00286 1.23217 0.97928 0.96835 0.99093 1.23178 0.92692 0.89224 0.92885 0.89651 1.46456 1.09890 1.03349 1.71303 1.19070 0.87263 0.93408 1.33750 0.90326 1.24689 0.98239 0.95989 1.01965 1.69445 1.32789 1.04967 1.50064 0.86035 0.83395 0.77937 0.77927 1.21706 1.21751 1.20806 1.19291 0.83941 0.94391 1.06561 1.20875 0.99335 0.91178 0.96760 1.21217 0.96561 0.95952 1.00553 1.20901 0.92365 0.99909 1.01924 1.21622 1.01438 0.80346 1.04201 1.42838 1.07934 1.06441 1.46154 0.90035 0.88656 0.90897 0.76218 0.91628 0.92652 0.92762 0.93379 0.92908 0.93197 0.93639 0.82144 0.84102 0.83234 0.81663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.40 10.32 36.01 0.37 -0.02 16 2 C 0.16 1.84 7.94 -154.57 -1.23 0.61 16 3 N -0.41 -5.96 10.90 -6.74 -0.07 -6.03 16 4 C -0.05 -0.77 7.05 -82.58 -0.58 -1.36 16 5 C 0.60 10.91 7.77 -13.03 -0.10 10.81 16 6 O -0.55 -11.25 15.48 5.13 0.08 -11.17 16 7 N -0.69 -12.26 3.64 -52.82 -0.19 -12.45 16 8 C 0.13 2.60 3.07 -65.44 -0.20 2.40 16 9 H 0.08 1.82 7.70 -51.93 -0.40 1.42 16 10 C -0.14 -2.86 6.20 -24.24 -0.15 -3.01 16 11 C 0.15 3.63 4.67 -62.80 -0.29 3.34 16 12 H 0.15 4.05 5.52 -51.93 -0.29 3.76 16 13 C -0.14 -2.83 6.58 -23.22 -0.15 -2.98 16 14 C -0.13 -2.65 6.38 -23.22 -0.15 -2.80 16 15 C 0.13 2.89 5.35 -62.79 -0.34 2.55 16 16 H 0.09 1.97 8.14 -51.93 -0.42 1.54 16 17 N -0.59 -15.26 2.99 -145.81 -0.44 -15.70 16 18 C -0.21 -5.86 10.59 -15.06 -0.16 -6.02 16 19 H 0.08 2.18 7.83 -52.48 -0.41 1.77 16 20 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 21 N -0.92 -26.79 10.46 55.49 0.58 -26.21 16 22 Si 0.92 22.48 29.55 -169.99 -5.02 17.46 16 23 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 24 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 25 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 26 C 0.07 0.96 6.72 -83.98 -0.56 0.40 16 27 C -0.06 -0.72 9.73 -39.54 -0.38 -1.11 16 28 C -0.12 -0.97 10.08 -39.46 -0.40 -1.37 16 29 C -0.13 -0.80 9.98 -39.92 -0.40 -1.20 16 30 C 0.05 0.32 10.77 -16.60 -0.18 0.14 16 31 N -0.36 -3.93 2.94 -57.93 -0.17 -4.10 16 32 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.28 7.99 -51.93 -0.41 -0.13 16 35 H 0.40 6.54 7.73 -40.82 -0.32 6.22 16 36 H 0.06 1.40 8.14 -51.93 -0.42 0.97 16 37 H 0.05 0.98 7.34 -51.93 -0.38 0.59 16 38 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.05 0.86 7.81 -51.93 -0.41 0.45 16 40 H 0.05 0.97 6.48 -51.93 -0.34 0.64 16 41 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 42 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 43 H 0.16 2.01 7.17 -52.49 -0.38 1.63 16 44 H 0.14 0.76 8.06 -52.48 -0.42 0.34 16 45 H 0.15 0.40 8.06 -52.48 -0.42 -0.03 16 46 H 0.17 0.51 7.94 -52.49 -0.42 0.10 16 LS Contribution 372.77 15.07 5.62 5.62 Total: -1.00 -34.09 372.77 -10.88 -44.97 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: -6.26 Total: 7.71 kcal Atomic # 6 Polarization: 4.90 SS G_CDS: -5.00 Total: -0.10 kcal Atomic # 7 Polarization: -64.20 SS G_CDS: -0.29 Total: -64.49 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: 0.08 Total: -11.17 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.09 -10.88 -44.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095757883.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.665 kcal (2) G-P(sol) polarization free energy of solvation -34.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.974 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds