Wall clock time and date at job start Sat Apr 11 2020 06:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30176 * 125.09279 * 2 1 4 4 C 1.34892 * 109.73723 * 180.17639 * 3 2 1 5 5 C 1.46279 * 126.50143 * 179.81740 * 4 3 2 6 6 O 1.21769 * 120.00450 * 179.68754 * 5 4 3 7 7 N 1.34783 * 119.99862 * 359.69076 * 5 4 3 8 8 C 1.46493 * 120.00115 * 179.97438 * 7 5 4 9 9 H 1.09000 * 110.55701 * 36.97753 * 8 7 5 10 10 C 1.54851 * 110.76618 * 159.97220 * 8 7 5 11 11 C 1.55839 * 103.44964 * 118.55285 * 10 8 7 12 12 H 1.09005 * 115.56127 * 158.80954 * 11 10 8 13 13 C 1.55846 * 105.06756 * 287.42647 * 11 10 8 14 14 C 1.56687 * 102.59842 * 72.29854 * 13 11 10 15 15 C 1.55848 * 103.60118 * 359.66599 * 14 13 11 16 16 H 1.08994 * 115.56258 * 159.79528 * 15 14 13 17 17 N 1.50241 * 101.05026 * 32.94099 * 11 10 8 18 18 C 1.36936 * 130.83931 * 126.04815 * 17 11 10 19 19 H 1.08003 * 119.99774 * 179.97438 * 18 17 11 20 20 C 1.38806 * 119.99928 * 359.97438 * 18 17 11 21 21 N 1.31620 * 120.00545 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 120.00076 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.46751 * 90.00104 * 22 20 18 24 24 H 1.48497 * 109.47714 * 210.00173 * 22 20 18 25 25 H 1.48505 * 109.47072 * 330.00654 * 22 20 18 26 26 C 1.40146 * 106.99901 * 359.56102 * 4 3 2 27 27 C 1.40185 * 133.57316 * 180.28574 * 26 4 3 28 28 C 1.36332 * 119.19565 * 179.97438 * 27 26 4 29 29 C 1.40392 * 119.56178 * 359.97438 * 28 27 26 30 30 C 1.35017 * 120.44295 * 0.02562 * 29 28 27 31 31 N 1.36249 * 125.08580 * 179.68327 * 2 1 3 32 32 H 1.09003 * 109.47027 * 270.31971 * 1 2 3 33 33 H 1.09004 * 109.46877 * 30.31277 * 1 2 3 34 34 H 1.08998 * 109.47197 * 150.31879 * 1 2 3 35 35 H 0.97006 * 119.99617 * 0.02562 * 7 5 4 36 36 H 1.08998 * 110.63000 * 237.04980 * 10 8 7 37 37 H 1.09007 * 110.62057 * 359.90398 * 10 8 7 38 38 H 1.08999 * 110.62784 * 190.30957 * 13 11 10 39 39 H 1.09000 * 110.62215 * 313.17446 * 13 11 10 40 40 H 1.08990 * 110.35684 * 241.22163 * 14 13 11 41 41 H 1.09001 * 110.74970 * 118.30077 * 14 13 11 42 42 H 0.96993 * 120.00574 * 179.97438 * 21 20 18 43 43 H 1.07996 * 120.40307 * 359.97438 * 27 26 4 44 44 H 1.08003 * 120.21606 * 180.02562 * 28 27 26 45 45 H 1.08003 * 119.77725 * 180.02562 * 29 28 27 46 46 H 1.07997 * 119.70603 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2554 1.0651 0.0000 4 6 3.5562 0.7079 -0.0039 5 6 4.7066 1.6114 -0.0090 6 8 5.8368 1.1582 -0.0064 7 7 4.5156 2.9456 -0.0164 8 6 5.6677 3.8504 -0.0208 9 1 6.4726 3.4423 -0.6322 10 6 5.2594 5.2566 -0.5246 11 6 5.5635 6.1803 0.6932 12 1 5.6937 7.2373 0.4608 13 6 4.4534 5.8531 1.7370 14 6 4.8734 4.4328 2.2485 15 6 6.1629 4.1160 1.4328 16 1 6.8108 3.3486 1.8565 17 7 6.7569 5.4885 1.2885 18 6 8.0023 5.9629 1.6031 19 1 8.7400 5.3006 2.0317 20 6 8.3166 7.2948 1.3711 21 7 7.4178 8.1018 0.8483 22 14 10.0154 7.9422 1.8009 23 1 10.9160 7.7838 0.6308 24 1 9.9208 9.3796 2.1618 25 1 10.5599 7.1777 2.9517 26 6 3.5964 -0.6929 0.0038 27 6 4.6393 -1.6296 0.0094 28 6 4.3389 -2.9594 0.0170 29 6 2.9951 -3.3659 0.0198 30 6 2.0033 -2.4498 0.0143 31 7 2.2902 -1.1149 0.0062 32 1 -0.3633 0.0057 1.0277 33 1 -0.3633 0.8872 -0.5187 34 1 -0.3633 -0.8928 -0.5089 35 1 3.6153 3.3066 -0.0180 36 1 5.8617 5.5459 -1.3858 37 1 4.1985 5.2822 -0.7736 38 1 4.4691 6.5751 2.5533 39 1 3.4728 5.8340 1.2614 40 1 4.0923 3.7048 2.0299 41 1 5.0904 4.4556 3.3165 42 1 7.6373 9.0326 0.6866 43 1 5.6684 -1.3019 0.0076 44 1 5.1294 -3.6953 0.0218 45 1 2.7531 -4.4184 0.0263 46 1 0.9736 -2.7757 0.0161 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001095757883.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:49 Heat of formation + Delta-G solvation = 81.192587 kcal Electronic energy + Delta-G solvation = -29540.543641 eV Core-core repulsion = 25624.870733 eV Total energy + Delta-G solvation = -3915.672908 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -43.90477 -41.35380 -39.60112 -38.46952 -35.42581 -34.61907 -34.14161 -32.53572 -31.17248 -30.97664 -30.64421 -29.40717 -27.73756 -26.16766 -24.91602 -24.59139 -22.83182 -22.15935 -21.79379 -21.12101 -20.18179 -19.16693 -18.72773 -17.85420 -17.33894 -17.25192 -16.88370 -16.74057 -16.42094 -16.35883 -15.84955 -15.52002 -15.21364 -15.07831 -14.45456 -14.09604 -13.99371 -13.92657 -13.48911 -13.42455 -13.22030 -13.06576 -12.90240 -12.77986 -12.67010 -12.61735 -12.59641 -12.40478 -12.00753 -11.92779 -11.69431 -11.62946 -11.55129 -11.25222 -11.07399 -10.95094 -10.81234 -10.38204 -10.00363 -8.88096 -8.48766 -7.79171 -5.19343 -0.37011 0.08183 1.23946 1.43488 1.46187 1.48224 1.56357 2.23999 2.27796 2.51295 2.59206 3.22117 3.33859 3.43270 3.51632 3.70638 3.78783 3.88038 3.94970 4.07829 4.12348 4.17315 4.20766 4.35346 4.45178 4.56747 4.58477 4.67819 4.73580 4.76168 4.78720 4.84893 4.93883 5.02615 5.03301 5.11401 5.13444 5.20416 5.26160 5.30545 5.32080 5.42180 5.52303 5.55110 5.71684 5.86771 6.13226 6.25250 6.47908 6.78508 7.04907 7.29618 7.67983 8.55019 9.27996 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.022348 B = 0.002678 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.632368 B =10451.545285 C =11298.725529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.166 3.834 3 N -0.440 5.440 4 C -0.112 4.112 5 C 0.598 3.402 6 O -0.586 6.586 7 N -0.688 5.688 8 C 0.147 3.853 9 H 0.055 0.945 10 C -0.126 4.126 11 C 0.142 3.858 12 H 0.124 0.876 13 C -0.125 4.125 14 C -0.117 4.117 15 C 0.121 3.879 16 H 0.067 0.933 17 N -0.615 5.615 18 C -0.226 4.226 19 H 0.072 0.928 20 C -0.064 4.064 21 N -0.945 5.945 22 Si 0.979 3.021 23 H -0.288 1.288 24 H -0.290 1.290 25 H -0.276 1.276 26 C 0.072 3.928 27 C -0.121 4.121 28 C -0.081 4.081 29 C -0.132 4.132 30 C 0.053 3.947 31 N -0.364 5.364 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.106 0.894 35 H 0.411 0.589 36 H 0.050 0.950 37 H 0.089 0.911 38 H 0.039 0.961 39 H 0.084 0.916 40 H 0.074 0.926 41 H 0.043 0.957 42 H 0.250 0.750 43 H 0.135 0.865 44 H 0.170 0.830 45 H 0.199 0.801 46 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.861 -25.729 -3.007 32.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.092 4.092 3 N -0.155 5.155 4 C -0.243 4.243 5 C 0.387 3.613 6 O -0.468 6.468 7 N -0.338 5.338 8 C 0.040 3.960 9 H 0.073 0.927 10 C -0.166 4.166 11 C 0.036 3.964 12 H 0.141 0.859 13 C -0.164 4.164 14 C -0.156 4.156 15 C 0.013 3.987 16 H 0.086 0.914 17 N -0.337 5.337 18 C -0.355 4.355 19 H 0.090 0.910 20 C -0.256 4.256 21 N -0.594 5.594 22 Si 0.808 3.192 23 H -0.215 1.215 24 H -0.216 1.216 25 H -0.201 1.201 26 C -0.042 4.042 27 C -0.141 4.141 28 C -0.103 4.103 29 C -0.152 4.152 30 C -0.067 4.067 31 N -0.035 5.035 32 H 0.114 0.886 33 H 0.114 0.886 34 H 0.125 0.875 35 H 0.249 0.751 36 H 0.069 0.931 37 H 0.108 0.892 38 H 0.058 0.942 39 H 0.102 0.898 40 H 0.092 0.908 41 H 0.062 0.938 42 H 0.060 0.940 43 H 0.153 0.847 44 H 0.187 0.813 45 H 0.216 0.784 46 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -19.258 -24.894 -2.975 31.614 hybrid contribution 1.539 0.274 0.243 1.582 sum -17.720 -24.620 -2.732 30.456 Atomic orbital electron populations 1.20426 0.80313 1.05933 1.05139 1.24247 0.97277 0.78312 1.09324 1.69900 1.01072 1.29393 1.15178 1.20195 0.91468 0.90402 1.22256 1.16874 0.86750 0.82129 0.75574 1.90755 1.24892 1.77404 1.53726 1.45748 1.10016 1.04728 1.73293 1.22134 0.87185 0.89257 0.97433 0.92702 1.23132 1.00784 0.93665 0.99019 1.23632 0.84050 0.98566 0.90147 0.85875 1.23243 0.98605 0.95480 0.99057 1.23082 0.97139 0.97172 0.98202 1.23264 0.93270 0.87611 0.94551 0.91440 1.46690 1.09958 1.05032 1.71970 1.19325 0.88519 0.93827 1.33846 0.91017 1.25449 1.01690 0.96130 1.02344 1.69667 1.34129 1.04819 1.50786 0.85062 0.79362 0.77106 0.77682 1.21538 1.21597 1.20102 1.19420 0.85796 0.93970 1.05014 1.20794 0.98117 0.92884 1.02285 1.21737 0.98898 0.94633 0.95048 1.21512 0.90823 1.02228 1.00624 1.22680 1.04271 0.78493 1.01288 1.43094 1.06569 1.08019 1.45811 0.88578 0.88616 0.87537 0.75128 0.93117 0.89221 0.94187 0.89797 0.90750 0.93827 0.94043 0.84712 0.81273 0.78389 0.76749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.52 10.32 71.24 0.74 0.21 16 2 C 0.17 3.36 7.94 137.83 1.09 4.45 16 3 N -0.44 -12.51 10.90 -175.25 -1.91 -14.42 16 4 C -0.11 -3.69 7.05 41.23 0.29 -3.40 16 5 C 0.60 23.20 7.77 86.33 0.67 23.87 16 6 O -0.59 -26.24 15.48 -4.57 -0.07 -26.31 16 7 N -0.69 -25.17 3.64 -439.20 -1.60 -26.77 16 8 C 0.15 6.26 3.07 46.61 0.14 6.40 16 9 H 0.05 2.63 7.70 -2.39 -0.02 2.61 16 10 C -0.13 -5.26 6.20 32.21 0.20 -5.06 16 11 C 0.14 6.89 4.67 46.23 0.22 7.10 16 12 H 0.12 6.82 5.52 -2.38 -0.01 6.80 16 13 C -0.12 -5.12 6.58 32.87 0.22 -4.91 16 14 C -0.12 -4.77 6.38 32.87 0.21 -4.56 16 15 C 0.12 5.69 5.35 46.23 0.25 5.94 16 16 H 0.07 3.35 8.14 -2.39 -0.02 3.33 16 17 N -0.61 -33.32 2.99 -615.22 -1.84 -35.16 16 18 C -0.23 -13.40 10.59 84.03 0.89 -12.52 16 19 H 0.07 4.19 7.83 -2.91 -0.02 4.17 16 20 C -0.06 -3.71 5.50 84.86 0.47 -3.24 16 21 N -0.94 -56.63 10.46 21.65 0.23 -56.40 16 22 Si 0.98 47.59 29.55 68.60 2.03 49.62 16 23 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 24 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 25 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 26 C 0.07 1.99 6.72 39.23 0.26 2.26 16 27 C -0.12 -2.88 9.73 22.30 0.22 -2.66 16 28 C -0.08 -1.06 10.08 22.35 0.23 -0.84 16 29 C -0.13 -0.89 9.98 22.05 0.22 -0.67 16 30 C 0.05 0.46 10.77 83.22 0.90 1.36 16 31 N -0.36 -6.93 2.94 -337.20 -0.99 -7.92 16 32 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.10 0.87 8.14 -2.38 -0.02 0.85 16 34 H 0.11 0.21 7.99 -2.39 -0.02 0.19 16 35 H 0.41 13.41 7.73 -92.70 -0.72 12.69 16 36 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 37 H 0.09 3.08 7.34 -2.38 -0.02 3.06 16 38 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.08 2.84 7.81 -2.39 -0.02 2.82 16 40 H 0.07 2.72 6.48 -2.39 -0.02 2.71 16 41 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 42 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 43 H 0.14 3.78 7.17 -2.91 -0.02 3.76 16 44 H 0.17 1.18 8.06 -2.91 -0.02 1.16 16 45 H 0.20 -0.49 8.06 -2.91 -0.02 -0.51 16 46 H 0.22 -0.32 7.94 -2.91 -0.02 -0.34 16 Total: -1.00 -82.21 372.77 3.35 -78.87 By element: Atomic # 1 Polarization: 24.45 SS G_CDS: 0.30 Total: 24.75 kcal Atomic # 6 Polarization: 6.55 SS G_CDS: 7.20 Total: 13.75 kcal Atomic # 7 Polarization: -134.56 SS G_CDS: -6.11 Total: -140.68 kcal Atomic # 8 Polarization: -26.24 SS G_CDS: -0.07 Total: -26.31 kcal Atomic # 14 Polarization: 47.59 SS G_CDS: 2.03 Total: 49.62 kcal Total: -82.21 3.35 -78.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095757883.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.060 kcal (2) G-P(sol) polarization free energy of solvation -82.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds