Wall clock time and date at job start Sat Apr 11 2020 06:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35450 * 125.69415 * 2 1 4 4 N 1.36430 * 107.22145 * 179.97438 * 3 2 1 5 5 C 1.36723 * 132.26494 * 180.02562 * 4 3 2 6 6 C 1.34548 * 120.95321 * 179.97438 * 5 4 3 7 7 C 1.41778 * 120.14911 * 0.02562 * 6 5 4 8 8 C 1.47649 * 120.37150 * 179.97438 * 7 6 5 9 9 O 1.21580 * 120.00199 * 180.02562 * 8 7 6 10 10 N 1.34775 * 120.00005 * 359.97438 * 8 7 6 11 11 C 1.46499 * 120.00063 * 180.02562 * 10 8 7 12 12 H 1.09000 * 110.56147 * 33.09956 * 11 10 8 13 13 C 1.54853 * 110.62789 * 156.00826 * 11 10 8 14 14 C 1.55845 * 103.44606 * 118.49118 * 13 11 10 15 15 H 1.09001 * 115.55642 * 158.81372 * 14 13 11 16 16 C 1.55851 * 105.05938 * 288.17149 * 14 13 11 17 17 C 1.54853 * 103.44319 * 71.82642 * 16 14 13 18 18 C 1.55842 * 103.44695 * 0.02562 * 17 16 14 19 19 H 1.08999 * 116.12896 * 159.14916 * 18 17 16 20 20 N 1.50232 * 101.05244 * 32.93490 * 14 13 11 21 21 C 1.36933 * 130.83937 * 126.06953 * 20 14 13 22 22 H 1.07998 * 120.00405 * 179.97438 * 21 20 14 23 23 C 1.38817 * 120.00183 * 359.97438 * 21 20 14 24 24 N 1.31627 * 119.99738 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00554 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.46989 * 359.97438 * 25 23 21 27 27 H 1.48496 * 109.47218 * 119.99469 * 25 23 21 28 28 H 1.48498 * 109.47322 * 239.99931 * 25 23 21 29 29 C 1.38434 * 119.25255 * 0.02562 * 7 6 5 30 30 C 1.37191 * 106.97406 * 0.02562 * 4 3 2 31 31 N 1.32650 * 108.06023 * 359.97438 * 30 4 3 32 32 H 1.08993 * 109.46751 * 89.99553 * 1 2 3 33 33 H 1.08994 * 109.47148 * 210.00159 * 1 2 3 34 34 H 1.09003 * 109.46334 * 330.00080 * 1 2 3 35 35 H 1.07995 * 126.38864 * 359.95341 * 3 2 1 36 36 H 1.07996 * 119.52667 * 359.97052 * 5 4 3 37 37 H 1.08000 * 119.92561 * 179.74513 * 6 5 4 38 38 H 0.97000 * 120.00360 * 359.97438 * 10 8 7 39 39 H 1.09011 * 110.62249 * 236.97576 * 13 11 10 40 40 H 1.08992 * 110.62938 * 359.97438 * 13 11 10 41 41 H 1.09005 * 110.62368 * 190.31865 * 16 14 13 42 42 H 1.08996 * 110.62920 * 313.33782 * 16 14 13 43 43 H 1.08991 * 110.62355 * 241.50268 * 17 16 14 44 44 H 1.09002 * 110.75521 * 118.55324 * 17 16 14 45 45 H 0.96996 * 119.99983 * 180.02562 * 24 23 21 46 46 H 1.08001 * 120.45521 * 180.02562 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2973 1.1000 0.0000 4 7 3.5913 0.6678 0.0006 5 6 4.7841 1.3361 0.0013 6 6 5.9518 0.6677 0.0023 7 6 5.9609 -0.7500 0.0021 8 6 7.2395 -1.4884 0.0026 9 8 7.2394 -2.7042 0.0019 10 7 8.4067 -0.8147 0.0028 11 6 9.6754 -1.5473 0.0027 12 1 9.5793 -2.4790 -0.5548 13 6 10.8100 -0.6735 -0.5864 14 6 11.8159 -0.5400 0.5964 15 1 12.8371 -0.2795 0.3182 16 6 11.1186 0.4105 1.6158 17 6 9.9840 -0.4634 2.2049 18 6 10.1507 -1.8230 1.4618 19 1 9.7049 -2.6922 1.9454 20 7 11.6404 -1.8688 1.2751 21 6 12.5565 -2.8267 1.6189 22 1 12.2326 -3.7322 2.1103 23 6 13.9018 -2.6339 1.3358 24 7 14.2966 -1.5305 0.7364 25 14 15.1518 -3.9402 1.8053 26 1 14.4573 -5.0760 2.4633 27 1 15.8450 -4.4236 0.5844 28 1 16.1467 -3.3592 2.7422 29 6 4.7574 -1.4342 0.0003 30 6 3.5555 -0.7037 0.0003 31 7 2.2840 -1.0818 0.0002 32 1 -0.3632 0.0001 -1.0276 33 1 -0.3633 -0.8899 0.5138 34 1 -0.3632 0.8901 0.5139 35 1 1.9651 2.1276 -0.0007 36 1 4.7891 2.4160 0.0010 37 1 6.8844 1.2124 -0.0013 38 1 8.4069 0.1553 0.0022 39 1 11.2785 -1.1731 -1.4344 40 1 10.4287 0.3048 -0.8789 41 1 11.8155 0.7131 2.3974 42 1 10.7071 1.2828 1.1081 43 1 9.0100 -0.0243 1.9893 44 1 10.1155 -0.5946 3.2790 45 1 15.2365 -1.3959 0.5382 46 1 4.7416 -2.5141 0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001096010432.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:54 Heat of formation + Delta-G solvation = 107.601894 kcal Electronic energy + Delta-G solvation = -29047.172733 eV Core-core repulsion = 25132.645019 eV Total energy + Delta-G solvation = -3914.527714 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.13653 -40.21629 -38.69413 -37.25983 -34.11953 -33.87118 -32.44049 -31.98128 -29.57998 -29.42684 -29.09807 -28.25805 -27.14507 -24.56783 -23.80348 -23.36538 -21.62087 -21.11146 -20.51539 -19.59786 -18.65864 -18.18528 -17.85261 -17.03885 -16.43589 -16.32141 -15.74410 -15.09939 -14.87160 -14.85225 -14.77045 -14.21197 -13.98250 -13.85335 -13.55760 -13.50997 -13.36935 -12.64294 -12.36260 -12.33268 -12.12540 -11.82275 -11.73905 -11.54557 -11.20723 -11.05620 -10.96245 -10.92830 -10.87488 -10.41415 -10.27120 -10.10744 -9.96857 -9.82796 -9.42689 -9.30164 -9.03543 -8.97023 -8.61095 -8.14749 -6.94890 -5.75886 -3.13795 0.23675 0.74982 2.23404 2.37916 2.79714 3.16450 3.38171 3.44382 3.46351 3.52526 3.89043 4.06938 4.27505 4.41777 4.53802 4.66811 4.85390 4.88636 5.06218 5.15478 5.29225 5.32765 5.34833 5.39959 5.51115 5.57802 5.69422 5.74572 5.77706 5.80941 5.91870 6.01525 6.05933 6.07079 6.24122 6.27855 6.29053 6.48252 6.54324 6.60394 6.68787 6.76495 6.90807 6.94343 7.22062 7.49812 7.54303 7.65067 7.77034 8.13310 8.33701 9.07687 9.70141 10.49604 11.33820 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.031976 B = 0.002251 C = 0.002172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.449138 B =12436.323672 C =12887.773632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.057 3.943 3 C -0.094 4.094 4 N -0.353 5.353 5 C 0.048 3.952 6 C -0.116 4.116 7 C -0.117 4.117 8 C 0.557 3.443 9 O -0.532 6.532 10 N -0.702 5.702 11 C 0.126 3.874 12 H 0.087 0.913 13 C -0.141 4.141 14 C 0.154 3.846 15 H 0.155 0.845 16 C -0.137 4.137 17 C -0.131 4.131 18 C 0.128 3.872 19 H 0.087 0.913 20 N -0.589 5.589 21 C -0.209 4.209 22 H 0.080 0.920 23 C -0.013 4.013 24 N -0.923 5.923 25 Si 0.917 3.083 26 H -0.280 1.280 27 H -0.291 1.291 28 H -0.291 1.291 29 C -0.005 4.005 30 C 0.213 3.787 31 N -0.479 5.479 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.184 0.816 36 H 0.168 0.832 37 H 0.155 0.845 38 H 0.394 0.606 39 H 0.067 0.933 40 H 0.054 0.946 41 H 0.055 0.945 42 H 0.045 0.955 43 H 0.050 0.950 44 H 0.052 0.948 45 H 0.253 0.747 46 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.792 11.897 -2.803 24.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.077 4.077 3 C -0.227 4.227 4 N -0.025 5.025 5 C -0.073 4.073 6 C -0.136 4.136 7 C -0.126 4.126 8 C 0.342 3.658 9 O -0.409 6.409 10 N -0.353 5.353 11 C 0.020 3.980 12 H 0.105 0.895 13 C -0.181 4.181 14 C 0.047 3.953 15 H 0.172 0.828 16 C -0.176 4.176 17 C -0.170 4.170 18 C 0.019 3.981 19 H 0.105 0.895 20 N -0.309 5.309 21 C -0.337 4.337 22 H 0.098 0.902 23 C -0.208 4.208 24 N -0.572 5.572 25 Si 0.748 3.252 26 H -0.205 1.205 27 H -0.218 1.218 28 H -0.218 1.218 29 C -0.026 4.026 30 C -0.028 4.028 31 N -0.199 5.199 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.201 0.799 36 H 0.186 0.814 37 H 0.172 0.828 38 H 0.230 0.770 39 H 0.085 0.915 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.063 0.937 43 H 0.068 0.932 44 H 0.070 0.930 45 H 0.064 0.936 46 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -21.716 10.111 -2.776 24.115 hybrid contribution 0.895 0.874 0.254 1.276 sum -20.821 10.985 -2.522 23.676 Atomic orbital electron populations 1.20151 0.86683 1.03298 1.02854 1.21011 0.97006 0.87881 1.01845 1.22496 0.80754 1.01192 1.18216 1.42797 1.06175 1.08852 1.44657 1.21436 0.82676 0.98757 1.04406 1.20863 0.97733 0.93439 1.01614 1.20077 0.94113 0.93257 1.05158 1.17842 0.83278 0.87224 0.77415 1.90816 1.87308 1.13099 1.49710 1.46139 1.05856 1.09873 1.73430 1.22757 0.80337 0.95295 0.99566 0.89504 1.23318 0.96774 0.97394 1.00657 1.23780 0.99137 0.84336 0.88066 0.82799 1.23047 0.97376 0.97026 1.00163 1.22911 0.97059 0.97577 0.99486 1.23208 0.86560 0.95447 0.92904 0.89544 1.46481 0.99637 1.17712 1.67113 1.19116 0.86597 0.96603 1.31370 0.90193 1.24710 0.96762 0.97954 1.01410 1.69439 1.14884 1.25610 1.47253 0.85945 0.81204 0.80461 0.77594 1.20508 1.21763 1.21827 1.20709 0.86455 1.01413 0.94068 1.20754 0.94275 0.80303 1.07470 1.70596 0.98070 1.29448 1.21820 0.90684 0.90554 0.90760 0.79907 0.81439 0.82772 0.77043 0.91465 0.92736 0.92582 0.93676 0.93194 0.92964 0.93601 0.81680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.47 10.42 36.01 0.38 -0.09 16 2 C 0.06 0.59 7.06 -83.00 -0.59 0.00 16 3 C -0.09 -0.81 11.64 -16.50 -0.19 -1.00 16 4 N -0.35 -3.56 2.94 -62.75 -0.18 -3.75 16 5 C 0.05 0.37 10.91 -16.68 -0.18 0.18 16 6 C -0.12 -0.96 9.48 -39.53 -0.37 -1.34 16 7 C -0.12 -1.39 5.90 -104.63 -0.62 -2.00 16 8 C 0.56 8.27 7.77 -12.42 -0.10 8.17 16 9 O -0.53 -10.05 16.02 5.29 0.08 -9.96 16 10 N -0.70 -9.72 3.66 -52.36 -0.19 -9.91 16 11 C 0.13 2.26 3.14 -65.40 -0.21 2.05 16 12 H 0.09 1.77 7.58 -51.93 -0.39 1.37 16 13 C -0.14 -2.56 6.20 -24.24 -0.15 -2.71 16 14 C 0.15 3.32 4.72 -62.80 -0.30 3.03 16 15 H 0.16 3.84 5.52 -51.93 -0.29 3.56 16 16 C -0.14 -2.50 6.44 -24.23 -0.16 -2.65 16 17 C -0.13 -2.30 6.32 -24.24 -0.15 -2.45 16 18 C 0.13 2.60 5.35 -62.79 -0.34 2.26 16 19 H 0.09 1.84 8.14 -51.93 -0.42 1.42 16 20 N -0.59 -14.32 2.98 -145.81 -0.44 -14.75 16 21 C -0.21 -5.67 10.59 -15.06 -0.16 -5.83 16 22 H 0.08 2.15 7.83 -52.49 -0.41 1.73 16 23 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 24 N -0.92 -25.76 10.47 55.49 0.58 -25.18 16 25 Si 0.92 21.85 29.55 -169.99 -5.02 16.83 16 26 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 27 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 28 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 29 C -0.01 -0.07 9.70 -38.60 -0.37 -0.44 16 30 C 0.21 2.72 7.79 -155.97 -1.22 1.51 16 31 N -0.48 -6.42 11.31 -9.02 -0.10 -6.53 16 32 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.18 0.87 8.06 -52.49 -0.42 0.44 16 36 H 0.17 0.62 8.06 -52.49 -0.42 0.19 16 37 H 0.15 0.86 6.46 -52.49 -0.34 0.52 16 38 H 0.39 4.22 5.98 -40.82 -0.24 3.98 16 39 H 0.07 1.31 8.14 -51.92 -0.42 0.88 16 40 H 0.05 0.80 7.38 -51.93 -0.38 0.42 16 41 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.04 0.67 7.82 -51.93 -0.41 0.27 16 43 H 0.05 0.73 6.39 -51.93 -0.33 0.40 16 44 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.25 6.87 8.31 -40.82 -0.34 6.54 16 46 H 0.17 2.17 7.67 -52.49 -0.40 1.77 16 LS Contribution 371.24 15.07 5.59 5.59 Total: -1.00 -33.41 371.24 -10.63 -44.04 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -6.14 Total: 5.38 kcal Atomic # 6 Polarization: 3.04 SS G_CDS: -4.82 Total: -1.77 kcal Atomic # 7 Polarization: -59.78 SS G_CDS: -0.33 Total: -60.11 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: 0.08 Total: -9.96 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.41 -10.63 -44.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096010432.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.643 kcal (2) G-P(sol) polarization free energy of solvation -33.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds