Wall clock time and date at job start Sat Apr 11 2020 06:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35450 * 125.69415 * 2 1 4 4 N 1.36430 * 107.22145 * 179.97438 * 3 2 1 5 5 C 1.36723 * 132.26494 * 180.02562 * 4 3 2 6 6 C 1.34548 * 120.95321 * 179.97438 * 5 4 3 7 7 C 1.41778 * 120.14911 * 0.02562 * 6 5 4 8 8 C 1.47649 * 120.37150 * 179.97438 * 7 6 5 9 9 O 1.21580 * 120.00199 * 180.02562 * 8 7 6 10 10 N 1.34775 * 120.00005 * 359.97438 * 8 7 6 11 11 C 1.46499 * 120.00063 * 180.02562 * 10 8 7 12 12 H 1.09000 * 110.56147 * 33.09956 * 11 10 8 13 13 C 1.54853 * 110.62789 * 156.00826 * 11 10 8 14 14 C 1.55845 * 103.44606 * 118.49118 * 13 11 10 15 15 H 1.09001 * 115.55642 * 158.81372 * 14 13 11 16 16 C 1.55851 * 105.05938 * 288.17149 * 14 13 11 17 17 C 1.54853 * 103.44319 * 71.82642 * 16 14 13 18 18 C 1.55842 * 103.44695 * 0.02562 * 17 16 14 19 19 H 1.08999 * 116.12896 * 159.14916 * 18 17 16 20 20 N 1.50232 * 101.05244 * 32.93490 * 14 13 11 21 21 C 1.36933 * 130.83937 * 126.06953 * 20 14 13 22 22 H 1.07998 * 120.00405 * 179.97438 * 21 20 14 23 23 C 1.38817 * 120.00183 * 359.97438 * 21 20 14 24 24 N 1.31627 * 119.99738 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00554 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.46989 * 359.97438 * 25 23 21 27 27 H 1.48496 * 109.47218 * 119.99469 * 25 23 21 28 28 H 1.48498 * 109.47322 * 239.99931 * 25 23 21 29 29 C 1.38434 * 119.25255 * 0.02562 * 7 6 5 30 30 C 1.37191 * 106.97406 * 0.02562 * 4 3 2 31 31 N 1.32650 * 108.06023 * 359.97438 * 30 4 3 32 32 H 1.08993 * 109.46751 * 89.99553 * 1 2 3 33 33 H 1.08994 * 109.47148 * 210.00159 * 1 2 3 34 34 H 1.09003 * 109.46334 * 330.00080 * 1 2 3 35 35 H 1.07995 * 126.38864 * 359.95341 * 3 2 1 36 36 H 1.07996 * 119.52667 * 359.97052 * 5 4 3 37 37 H 1.08000 * 119.92561 * 179.74513 * 6 5 4 38 38 H 0.97000 * 120.00360 * 359.97438 * 10 8 7 39 39 H 1.09011 * 110.62249 * 236.97576 * 13 11 10 40 40 H 1.08992 * 110.62938 * 359.97438 * 13 11 10 41 41 H 1.09005 * 110.62368 * 190.31865 * 16 14 13 42 42 H 1.08996 * 110.62920 * 313.33782 * 16 14 13 43 43 H 1.08991 * 110.62355 * 241.50268 * 17 16 14 44 44 H 1.09002 * 110.75521 * 118.55324 * 17 16 14 45 45 H 0.96996 * 119.99983 * 180.02562 * 24 23 21 46 46 H 1.08001 * 120.45521 * 180.02562 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2973 1.1000 0.0000 4 7 3.5913 0.6678 0.0006 5 6 4.7841 1.3361 0.0013 6 6 5.9518 0.6677 0.0023 7 6 5.9609 -0.7500 0.0021 8 6 7.2395 -1.4884 0.0026 9 8 7.2394 -2.7042 0.0019 10 7 8.4067 -0.8147 0.0028 11 6 9.6754 -1.5473 0.0027 12 1 9.5793 -2.4790 -0.5548 13 6 10.8100 -0.6735 -0.5864 14 6 11.8159 -0.5400 0.5964 15 1 12.8371 -0.2795 0.3182 16 6 11.1186 0.4105 1.6158 17 6 9.9840 -0.4634 2.2049 18 6 10.1507 -1.8230 1.4618 19 1 9.7049 -2.6922 1.9454 20 7 11.6404 -1.8688 1.2751 21 6 12.5565 -2.8267 1.6189 22 1 12.2326 -3.7322 2.1103 23 6 13.9018 -2.6339 1.3358 24 7 14.2966 -1.5305 0.7364 25 14 15.1518 -3.9402 1.8053 26 1 14.4573 -5.0760 2.4633 27 1 15.8450 -4.4236 0.5844 28 1 16.1467 -3.3592 2.7422 29 6 4.7574 -1.4342 0.0003 30 6 3.5555 -0.7037 0.0003 31 7 2.2840 -1.0818 0.0002 32 1 -0.3632 0.0001 -1.0276 33 1 -0.3633 -0.8899 0.5138 34 1 -0.3632 0.8901 0.5139 35 1 1.9651 2.1276 -0.0007 36 1 4.7891 2.4160 0.0010 37 1 6.8844 1.2124 -0.0013 38 1 8.4069 0.1553 0.0022 39 1 11.2785 -1.1731 -1.4344 40 1 10.4287 0.3048 -0.8789 41 1 11.8155 0.7131 2.3974 42 1 10.7071 1.2828 1.1081 43 1 9.0100 -0.0243 1.9893 44 1 10.1155 -0.5946 3.2790 45 1 15.2365 -1.3959 0.5382 46 1 4.7416 -2.5141 0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001096010432.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:53 Heat of formation + Delta-G solvation = 87.713533 kcal Electronic energy + Delta-G solvation = -29048.035157 eV Core-core repulsion = 25132.645019 eV Total energy + Delta-G solvation = -3915.390138 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.86631 -41.58192 -40.04633 -38.12112 -35.58040 -34.72700 -34.22711 -32.69668 -31.00580 -30.77599 -30.30687 -29.53172 -28.17792 -26.21777 -24.94011 -24.08746 -22.89692 -22.20874 -21.55472 -21.20194 -20.16722 -19.13845 -18.87689 -18.59675 -17.39408 -17.08368 -16.96283 -16.75600 -16.40612 -15.90903 -15.71695 -15.59830 -15.37145 -15.01020 -14.29185 -14.12675 -14.04768 -14.00695 -13.89976 -13.46805 -13.21072 -13.20260 -12.88684 -12.83569 -12.80239 -12.59375 -12.42994 -12.36401 -12.05484 -11.98239 -11.88679 -11.57752 -11.28157 -11.16851 -11.08454 -10.97209 -10.77088 -10.05809 -9.72905 -8.91310 -8.82876 -7.80121 -5.18846 -0.60939 0.05731 1.45478 1.46478 1.55820 1.58603 1.60696 1.89563 1.99533 2.49123 2.58140 3.13878 3.33354 3.40500 3.49500 3.59813 3.76110 3.94181 3.98295 4.10768 4.15538 4.28666 4.32926 4.36438 4.44378 4.48508 4.62112 4.63654 4.73210 4.81349 4.87036 4.88228 4.92290 4.97700 5.01376 5.08731 5.11582 5.17505 5.20868 5.33561 5.37173 5.48602 5.54535 5.63884 5.76014 5.90433 6.04389 6.29205 6.54524 6.81505 7.06252 7.19645 7.69188 8.54786 9.26633 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.031976 B = 0.002251 C = 0.002172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.449138 B =12436.323672 C =12887.773632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.031 3.969 3 C -0.075 4.075 4 N -0.356 5.356 5 C 0.066 3.934 6 C -0.121 4.121 7 C -0.114 4.114 8 C 0.558 3.442 9 O -0.582 6.582 10 N -0.683 5.683 11 C 0.145 3.855 12 H 0.054 0.946 13 C -0.126 4.126 14 C 0.137 3.863 15 H 0.121 0.879 16 C -0.124 4.124 17 C -0.116 4.116 18 C 0.116 3.884 19 H 0.064 0.936 20 N -0.619 5.619 21 C -0.222 4.222 22 H 0.069 0.931 23 C -0.064 4.064 24 N -0.942 5.942 25 Si 0.974 3.026 26 H -0.276 1.276 27 H -0.292 1.292 28 H -0.291 1.291 29 C -0.029 4.029 30 C 0.184 3.816 31 N -0.523 5.523 32 H 0.083 0.917 33 H 0.064 0.936 34 H 0.103 0.897 35 H 0.230 0.770 36 H 0.221 0.779 37 H 0.192 0.808 38 H 0.416 0.584 39 H 0.046 0.954 40 H 0.103 0.897 41 H 0.034 0.966 42 H 0.094 0.906 43 H 0.090 0.910 44 H 0.040 0.960 45 H 0.249 0.751 46 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.867 16.381 -2.989 29.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.103 4.103 3 C -0.207 4.207 4 N -0.027 5.027 5 C -0.055 4.055 6 C -0.141 4.141 7 C -0.123 4.123 8 C 0.346 3.654 9 O -0.462 6.462 10 N -0.336 5.336 11 C 0.038 3.962 12 H 0.072 0.928 13 C -0.165 4.165 14 C 0.031 3.969 15 H 0.138 0.862 16 C -0.163 4.163 17 C -0.155 4.155 18 C 0.008 3.992 19 H 0.082 0.918 20 N -0.341 5.341 21 C -0.351 4.351 22 H 0.087 0.913 23 C -0.257 4.257 24 N -0.592 5.592 25 Si 0.803 3.197 26 H -0.201 1.201 27 H -0.219 1.219 28 H -0.218 1.218 29 C -0.051 4.051 30 C -0.057 4.057 31 N -0.245 5.245 32 H 0.102 0.898 33 H 0.083 0.917 34 H 0.122 0.878 35 H 0.247 0.753 36 H 0.238 0.762 37 H 0.209 0.791 38 H 0.256 0.744 39 H 0.064 0.936 40 H 0.121 0.879 41 H 0.053 0.947 42 H 0.113 0.887 43 H 0.109 0.891 44 H 0.059 0.941 45 H 0.059 0.941 46 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -23.830 14.646 -2.963 28.127 hybrid contribution 1.392 -0.522 0.304 1.518 sum -22.437 14.125 -2.659 26.646 Atomic orbital electron populations 1.20258 0.84612 1.04171 1.03660 1.21730 0.98623 0.87822 1.02107 1.23246 0.79709 1.02586 1.15147 1.43077 1.07645 1.07909 1.44116 1.22285 0.81173 1.00839 1.01173 1.21181 0.99893 0.91257 1.01812 1.19829 0.91590 0.95023 1.05865 1.18312 0.84370 0.86732 0.76012 1.90802 1.88044 1.15658 1.51737 1.45771 1.04062 1.10699 1.73042 1.22172 0.82068 0.94710 0.97247 0.92765 1.23149 0.95497 0.99488 0.98404 1.23724 0.98882 0.84079 0.90230 0.86171 1.22945 0.96743 0.97807 0.98816 1.22819 0.98876 0.95507 0.98341 1.23357 0.84658 0.96462 0.94773 0.91809 1.46743 1.00999 1.18406 1.67926 1.19305 0.87740 0.97133 1.30963 0.91322 1.25389 0.98176 0.99891 1.02197 1.69660 1.14647 1.26669 1.48180 0.85062 0.79033 0.78544 0.77012 1.20085 1.21933 1.21773 1.20544 0.87643 1.00669 0.96244 1.20618 0.93839 0.81930 1.09264 1.70533 0.99134 1.31751 1.23117 0.89836 0.91726 0.87840 0.75323 0.76241 0.79130 0.74400 0.93560 0.87903 0.94656 0.88734 0.89149 0.94068 0.94125 0.84160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.76 10.42 71.24 0.74 -0.02 16 2 C 0.03 0.57 7.06 41.71 0.29 0.87 16 3 C -0.07 -0.98 11.64 83.33 0.97 -0.01 16 4 N -0.36 -5.92 2.94 -352.45 -1.04 -6.96 16 5 C 0.07 0.62 10.91 83.09 0.91 1.53 16 6 C -0.12 -1.45 9.48 22.30 0.21 -1.24 16 7 C -0.11 -2.54 5.90 -19.87 -0.12 -2.66 16 8 C 0.56 16.21 7.77 86.73 0.67 16.89 16 9 O -0.58 -23.03 16.02 -3.97 -0.06 -23.10 16 10 N -0.68 -17.16 3.66 -437.85 -1.60 -18.76 16 11 C 0.15 5.11 3.14 46.63 0.15 5.26 16 12 H 0.05 2.29 7.58 -2.39 -0.02 2.27 16 13 C -0.13 -4.34 6.20 32.21 0.20 -4.14 16 14 C 0.14 5.86 4.72 46.23 0.22 6.08 16 15 H 0.12 6.10 5.52 -2.39 -0.01 6.09 16 16 C -0.12 -4.19 6.44 32.21 0.21 -3.98 16 17 C -0.12 -3.82 6.32 32.21 0.20 -3.61 16 18 C 0.12 4.74 5.35 46.26 0.25 4.99 16 19 H 0.06 2.85 8.14 -2.39 -0.02 2.83 16 20 N -0.62 -30.88 2.98 -615.22 -1.84 -32.71 16 21 C -0.22 -12.56 10.59 84.04 0.89 -11.67 16 22 H 0.07 3.88 7.83 -2.91 -0.02 3.86 16 23 C -0.06 -3.58 5.50 84.86 0.47 -3.12 16 24 N -0.94 -54.06 10.47 21.65 0.23 -53.84 16 25 Si 0.97 46.27 29.55 68.60 2.03 48.29 16 26 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 27 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16 28 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 29 C -0.03 -0.77 9.70 22.91 0.22 -0.55 16 30 C 0.18 4.62 7.79 133.97 1.04 5.67 16 31 N -0.52 -14.17 11.31 -182.45 -2.06 -16.23 16 32 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 35 H 0.23 0.67 8.06 -2.91 -0.02 0.64 16 36 H 0.22 -0.21 8.06 -2.91 -0.02 -0.24 16 37 H 0.19 0.77 6.46 -2.91 -0.02 0.76 16 38 H 0.42 6.68 5.98 -92.71 -0.55 6.13 16 39 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 40 H 0.10 2.53 7.38 -2.39 -0.02 2.51 16 41 H 0.03 1.33 8.14 -2.38 -0.02 1.31 16 42 H 0.09 2.27 7.82 -2.39 -0.02 2.26 16 43 H 0.09 2.22 6.39 -2.39 -0.02 2.21 16 44 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 45 H 0.25 13.88 8.31 -92.71 -0.77 13.11 16 46 H 0.14 4.19 7.67 -2.91 -0.02 4.17 16 Total: -1.00 -81.66 371.24 3.65 -78.01 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: 0.47 Total: 15.00 kcal Atomic # 6 Polarization: 2.77 SS G_CDS: 7.53 Total: 10.30 kcal Atomic # 7 Polarization: -122.19 SS G_CDS: -6.31 Total: -128.50 kcal Atomic # 8 Polarization: -23.03 SS G_CDS: -0.06 Total: -23.10 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.03 Total: 48.29 kcal Total: -81.66 3.65 -78.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096010432.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.726 kcal (2) G-P(sol) polarization free energy of solvation -81.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds