Wall clock time and date at job start Sat Apr 11 2020 06:05:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35457 * 126.38871 * 2 1 4 4 N 1.33183 * 108.61847 * 179.97438 * 3 2 1 5 5 C 1.32645 * 109.12844 * 359.97438 * 4 3 2 6 6 C 1.40647 * 132.14670 * 179.97438 * 5 4 3 7 7 C 1.38443 * 119.09130 * 180.02562 * 6 5 4 8 8 C 1.47650 * 120.37697 * 180.02562 * 7 6 5 9 9 O 1.21587 * 119.99867 * 359.97438 * 8 7 6 10 10 N 1.34770 * 120.00271 * 179.97438 * 8 7 6 11 11 C 1.46501 * 120.00073 * 180.02562 * 10 8 7 12 12 H 1.08993 * 110.56183 * 32.09494 * 11 10 8 13 13 C 1.54855 * 110.62273 * 269.02439 * 11 10 8 14 14 C 1.55850 * 103.44459 * 241.51060 * 13 11 10 15 15 H 1.08999 * 116.12428 * 159.14782 * 14 13 11 16 16 C 1.55846 * 105.06188 * 288.17292 * 14 13 11 17 17 C 1.54855 * 103.44422 * 71.82681 * 16 14 13 18 18 C 1.55843 * 103.44446 * 359.97438 * 17 16 14 19 19 H 1.09000 * 116.12934 * 159.14973 * 18 17 16 20 20 N 1.50233 * 101.05454 * 32.93909 * 18 17 16 21 21 C 1.36941 * 130.84313 * 126.05381 * 20 18 17 22 22 H 1.08001 * 119.99366 * 4.75185 * 21 20 18 23 23 C 1.38813 * 120.00059 * 184.75360 * 21 20 18 24 24 N 1.31618 * 120.00030 * 8.96430 * 23 21 20 25 25 Si 1.86795 * 119.99606 * 188.96696 * 23 21 20 26 26 H 1.48498 * 109.47379 * 94.25049 * 25 23 21 27 27 H 1.48507 * 109.46840 * 214.24729 * 25 23 21 28 28 H 1.48499 * 109.47451 * 334.24688 * 25 23 21 29 29 C 1.41776 * 119.25043 * 0.02562 * 7 6 5 30 30 C 1.34544 * 120.15195 * 0.25356 * 29 7 6 31 31 N 1.36441 * 126.39123 * 179.97438 * 2 1 3 32 32 H 1.08995 * 109.47428 * 270.00492 * 1 2 3 33 33 H 1.09000 * 109.47520 * 30.01061 * 1 2 3 34 34 H 1.09001 * 109.46902 * 150.00271 * 1 2 3 35 35 H 1.07996 * 125.68325 * 359.97438 * 3 2 1 36 36 H 1.08000 * 120.45856 * 0.06540 * 6 5 4 37 37 H 0.97001 * 119.99869 * 359.97438 * 10 8 7 38 38 H 1.09001 * 110.62758 * 359.97438 * 13 11 10 39 39 H 1.08997 * 110.62782 * 123.02328 * 13 11 10 40 40 H 1.09003 * 110.62143 * 190.31110 * 16 14 13 41 41 H 1.08995 * 110.62602 * 313.17653 * 16 14 13 42 42 H 1.09005 * 110.62702 * 241.50916 * 17 16 14 43 43 H 1.08996 * 110.62581 * 118.48594 * 17 16 14 44 44 H 0.97000 * 119.99785 * 180.02562 * 24 23 21 45 45 H 1.08001 * 119.92211 * 179.97438 * 29 7 6 46 46 H 1.08005 * 119.52048 * 179.72050 * 30 29 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3106 1.0904 0.0000 4 7 3.5789 0.6840 0.0006 5 6 3.6103 -0.6421 0.0015 6 6 4.6752 -1.5609 0.0019 7 6 4.3945 -2.9166 0.0024 8 6 5.4905 -3.9060 0.0034 9 8 6.6473 -3.5317 0.0033 10 7 5.2086 -5.2239 0.0043 11 6 6.2961 -6.2055 0.0059 12 1 7.1592 -5.8198 0.5483 13 6 6.6854 -6.5906 -1.4426 14 6 6.3889 -8.1194 -1.5032 15 1 6.2504 -8.5424 -2.4982 16 6 7.5040 -8.7827 -0.6399 17 6 7.1148 -8.3977 0.8086 18 6 5.8179 -7.5536 0.6231 19 1 5.1720 -7.4677 1.4969 20 7 5.2098 -8.2201 -0.5782 21 6 3.9640 -8.7548 -0.7709 22 1 3.2128 -8.6650 -0.0001 23 6 3.6667 -9.4123 -1.9567 24 7 4.6241 -9.6774 -2.8201 25 14 1.9078 -9.9206 -2.3271 26 1 1.2490 -8.8674 -3.1408 27 1 1.9107 -11.1997 -3.0817 28 1 1.1653 -10.0990 -1.0535 29 6 3.0428 -3.3442 0.0019 30 6 2.0475 -2.4388 -0.0042 31 7 2.3165 -1.0983 0.0005 32 1 -0.3634 0.0001 1.0276 33 1 -0.3634 0.8899 -0.5140 34 1 -0.3633 -0.8900 -0.5138 35 1 1.9781 2.1180 -0.0004 36 1 5.6978 -1.2137 0.0025 37 1 4.2857 -5.5225 0.0048 38 1 6.0690 -6.0515 -2.1621 39 1 7.7432 -6.3973 -1.6202 40 1 7.4937 -9.8655 -0.7653 41 1 8.4820 -8.3767 -0.8981 42 1 7.8995 -7.7987 1.2708 43 1 6.9114 -9.2894 1.4015 44 1 4.4162 -10.1365 -3.6489 45 1 2.8114 -4.3991 0.0018 46 1 1.0215 -2.7759 -0.0091 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001097073508.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:58 Heat of formation + Delta-G solvation = 100.452724 kcal Electronic energy + Delta-G solvation = -29330.672136 eV Core-core repulsion = 25415.834411 eV Total energy + Delta-G solvation = -3914.837725 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -43.06266 -40.00954 -38.68133 -37.04223 -34.12033 -33.97292 -32.60931 -31.60857 -30.22735 -29.18428 -28.96134 -28.06103 -26.79300 -24.42132 -23.96533 -23.39028 -21.46097 -21.34644 -20.11261 -19.85233 -18.78648 -17.72954 -17.46093 -17.05617 -16.71684 -16.29172 -15.73850 -15.02395 -14.87770 -14.67202 -14.52748 -13.98226 -13.88983 -13.82625 -13.53178 -13.39952 -13.36791 -12.91988 -12.75789 -12.13261 -12.00768 -11.98352 -11.89148 -11.36103 -11.20075 -11.01559 -10.96663 -10.90294 -10.56942 -10.40325 -10.32956 -10.15360 -10.01812 -9.91251 -9.39047 -9.20691 -9.06589 -8.96307 -8.61580 -7.93937 -7.01554 -5.83876 -3.20515 0.34473 0.86100 2.30473 2.48314 2.91515 3.29347 3.30724 3.34220 3.37999 3.63083 4.05922 4.25559 4.33706 4.34722 4.60089 4.70842 4.80861 5.00900 5.05760 5.15008 5.22215 5.26277 5.28638 5.44489 5.58625 5.60972 5.63402 5.81439 5.83879 5.88424 6.00545 6.04426 6.10670 6.19433 6.23204 6.36265 6.37110 6.43268 6.55618 6.69432 6.77370 6.78580 6.90435 7.03370 7.26778 7.40505 7.60741 7.71838 7.84082 8.07168 8.43599 8.98119 9.62617 10.44844 11.26826 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012519 B = 0.003190 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2236.022110 B = 8775.976073 C =10525.973375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.066 4.066 3 C 0.033 3.967 4 N -0.479 5.479 5 C 0.208 3.792 6 C -0.005 4.005 7 C -0.117 4.117 8 C 0.558 3.442 9 O -0.542 6.542 10 N -0.696 5.696 11 C 0.129 3.871 12 H 0.084 0.916 13 C -0.145 4.145 14 C 0.157 3.843 15 H 0.147 0.853 16 C -0.136 4.136 17 C -0.127 4.127 18 C 0.124 3.876 19 H 0.088 0.912 20 N -0.590 5.590 21 C -0.219 4.219 22 H 0.078 0.922 23 C -0.008 4.008 24 N -0.915 5.915 25 Si 0.912 3.088 26 H -0.290 1.290 27 H -0.291 1.291 28 H -0.282 1.282 29 C -0.111 4.111 30 C 0.046 3.954 31 N -0.351 5.351 32 H 0.073 0.927 33 H 0.085 0.915 34 H 0.065 0.935 35 H 0.182 0.818 36 H 0.165 0.835 37 H 0.402 0.598 38 H 0.059 0.941 39 H 0.056 0.944 40 H 0.057 0.943 41 H 0.048 0.952 42 H 0.052 0.948 43 H 0.057 0.943 44 H 0.254 0.746 45 H 0.158 0.842 46 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.079 14.215 6.238 16.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.180 4.180 3 C -0.121 4.121 4 N -0.199 5.199 5 C -0.033 4.033 6 C -0.027 4.027 7 C -0.126 4.126 8 C 0.344 3.656 9 O -0.421 6.421 10 N -0.345 5.345 11 C 0.023 3.977 12 H 0.101 0.899 13 C -0.185 4.185 14 C 0.050 3.950 15 H 0.164 0.836 16 C -0.176 4.176 17 C -0.167 4.167 18 C 0.016 3.984 19 H 0.106 0.894 20 N -0.311 5.311 21 C -0.347 4.347 22 H 0.096 0.904 23 C -0.204 4.204 24 N -0.562 5.562 25 Si 0.743 3.257 26 H -0.217 1.217 27 H -0.218 1.218 28 H -0.207 1.207 29 C -0.132 4.132 30 C -0.075 4.075 31 N -0.023 5.023 32 H 0.092 0.908 33 H 0.104 0.896 34 H 0.084 0.916 35 H 0.199 0.801 36 H 0.182 0.818 37 H 0.238 0.762 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.066 0.934 42 H 0.070 0.930 43 H 0.076 0.924 44 H 0.065 0.935 45 H 0.176 0.824 46 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -4.852 14.756 6.066 16.675 hybrid contribution -2.108 -1.013 -0.239 2.351 sum -6.960 13.742 5.827 16.470 Atomic orbital electron populations 1.20197 0.86375 1.03638 1.02849 1.21344 0.94899 0.85285 1.16492 1.22358 0.87857 0.98674 1.03234 1.70666 1.21818 1.06130 1.21241 1.20710 0.83634 0.90902 1.08017 1.20683 0.98265 0.89454 0.94261 1.20081 0.93748 0.93644 1.05114 1.17845 0.87861 0.82638 0.77275 1.90774 1.20554 1.80057 1.50736 1.45921 1.11264 1.04730 1.72609 1.22706 0.88602 0.88359 0.98053 0.89852 1.23471 0.99318 1.00587 0.95156 1.23591 0.83968 0.89865 0.97578 0.83628 1.23037 0.98257 1.00784 0.95495 1.22863 0.97030 0.99266 0.97586 1.23168 0.93323 0.90462 0.91472 0.89368 1.46557 1.10599 1.66191 1.07794 1.18985 0.86235 1.28670 1.00775 0.90397 1.24713 0.97644 1.00412 0.97651 1.69588 1.30001 1.45556 1.11018 0.86103 0.83945 0.77772 0.77918 1.21741 1.21765 1.20716 1.20950 0.90877 1.00537 1.00843 1.21414 1.01432 0.80083 1.04535 1.42725 1.08876 1.05764 1.44982 0.90823 0.89648 0.91566 0.80135 0.81762 0.76205 0.92245 0.92505 0.92425 0.93358 0.92976 0.92393 0.93516 0.82439 0.81558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.43 10.30 36.00 0.37 -0.06 16 2 C -0.07 -0.66 7.02 -81.54 -0.57 -1.23 16 3 C 0.03 0.36 11.75 -17.96 -0.21 0.15 16 4 N -0.48 -6.83 11.31 -12.80 -0.14 -6.97 16 5 C 0.21 2.91 7.79 -155.97 -1.22 1.70 16 6 C -0.01 -0.08 9.70 -38.60 -0.37 -0.45 16 7 C -0.12 -1.59 5.90 -104.63 -0.62 -2.21 16 8 C 0.56 9.03 7.77 -12.42 -0.10 8.93 16 9 O -0.54 -10.39 16.01 5.29 0.08 -10.31 16 10 N -0.70 -11.11 5.03 -52.43 -0.26 -11.37 16 11 C 0.13 2.27 2.80 -65.46 -0.18 2.08 16 12 H 0.08 1.48 7.23 -51.93 -0.38 1.11 16 13 C -0.14 -2.81 6.23 -24.23 -0.15 -2.97 16 14 C 0.16 3.42 4.69 -62.82 -0.29 3.12 16 15 H 0.15 3.68 5.69 -51.93 -0.30 3.39 16 16 C -0.14 -2.63 6.44 -24.23 -0.16 -2.79 16 17 C -0.13 -2.24 6.44 -24.24 -0.16 -2.39 16 18 C 0.12 2.29 5.06 -62.84 -0.32 1.97 16 19 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 20 N -0.59 -13.25 2.98 -145.87 -0.43 -13.69 16 21 C -0.22 -5.43 10.56 -15.06 -0.16 -5.59 16 22 H 0.08 1.85 7.84 -52.49 -0.41 1.44 16 23 C -0.01 -0.20 5.47 -17.43 -0.10 -0.29 16 24 N -0.91 -24.88 10.61 55.49 0.59 -24.29 16 25 Si 0.91 20.49 29.56 -169.99 -5.03 15.46 16 26 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 27 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 28 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 29 C -0.11 -1.23 9.48 -39.54 -0.37 -1.60 16 30 C 0.05 0.46 10.80 -16.68 -0.18 0.28 16 31 N -0.35 -4.14 2.94 -58.55 -0.17 -4.31 16 32 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.07 0.36 8.12 -51.93 -0.42 -0.06 16 35 H 0.18 1.34 8.06 -52.49 -0.42 0.92 16 36 H 0.16 2.28 7.67 -52.49 -0.40 1.88 16 37 H 0.40 5.96 6.72 -40.82 -0.27 5.69 16 38 H 0.06 1.23 7.98 -51.93 -0.41 0.82 16 39 H 0.06 1.04 7.82 -51.93 -0.41 0.63 16 40 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.05 0.83 7.82 -51.93 -0.41 0.43 16 42 H 0.05 0.80 7.82 -51.93 -0.41 0.40 16 43 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.25 6.79 8.31 -40.82 -0.34 6.45 16 45 H 0.16 1.48 6.46 -52.49 -0.34 1.15 16 46 H 0.17 1.10 8.03 -52.48 -0.42 0.68 16 LS Contribution 374.24 15.07 5.64 5.64 Total: -1.00 -31.38 374.24 -10.76 -42.14 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: -6.24 Total: 9.04 kcal Atomic # 6 Polarization: 3.44 SS G_CDS: -4.78 Total: -1.34 kcal Atomic # 7 Polarization: -60.21 SS G_CDS: -0.43 Total: -60.63 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: 0.08 Total: -10.31 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.03 Total: 15.46 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.38 -10.76 -42.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097073508.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.594 kcal (2) G-P(sol) polarization free energy of solvation -31.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds