Wall clock time and date at job start Sat Apr 11 2020 06:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35457 * 126.38871 * 2 1 4 4 N 1.33183 * 108.61847 * 179.97438 * 3 2 1 5 5 C 1.32645 * 109.12844 * 359.97438 * 4 3 2 6 6 C 1.40647 * 132.14670 * 179.97438 * 5 4 3 7 7 C 1.38443 * 119.09130 * 180.02562 * 6 5 4 8 8 C 1.47650 * 120.37697 * 180.02562 * 7 6 5 9 9 O 1.21587 * 119.99867 * 359.97438 * 8 7 6 10 10 N 1.34770 * 120.00271 * 179.97438 * 8 7 6 11 11 C 1.46501 * 120.00073 * 180.02562 * 10 8 7 12 12 H 1.08993 * 110.56183 * 32.09494 * 11 10 8 13 13 C 1.54855 * 110.62273 * 269.02439 * 11 10 8 14 14 C 1.55850 * 103.44459 * 241.51060 * 13 11 10 15 15 H 1.08999 * 116.12428 * 159.14782 * 14 13 11 16 16 C 1.55846 * 105.06188 * 288.17292 * 14 13 11 17 17 C 1.54855 * 103.44422 * 71.82681 * 16 14 13 18 18 C 1.55843 * 103.44446 * 359.97438 * 17 16 14 19 19 H 1.09000 * 116.12934 * 159.14973 * 18 17 16 20 20 N 1.50233 * 101.05454 * 32.93909 * 18 17 16 21 21 C 1.36941 * 130.84313 * 126.05381 * 20 18 17 22 22 H 1.08001 * 119.99366 * 4.75185 * 21 20 18 23 23 C 1.38813 * 120.00059 * 184.75360 * 21 20 18 24 24 N 1.31618 * 120.00030 * 8.96430 * 23 21 20 25 25 Si 1.86795 * 119.99606 * 188.96696 * 23 21 20 26 26 H 1.48498 * 109.47379 * 94.25049 * 25 23 21 27 27 H 1.48507 * 109.46840 * 214.24729 * 25 23 21 28 28 H 1.48499 * 109.47451 * 334.24688 * 25 23 21 29 29 C 1.41776 * 119.25043 * 0.02562 * 7 6 5 30 30 C 1.34544 * 120.15195 * 0.25356 * 29 7 6 31 31 N 1.36441 * 126.39123 * 179.97438 * 2 1 3 32 32 H 1.08995 * 109.47428 * 270.00492 * 1 2 3 33 33 H 1.09000 * 109.47520 * 30.01061 * 1 2 3 34 34 H 1.09001 * 109.46902 * 150.00271 * 1 2 3 35 35 H 1.07996 * 125.68325 * 359.97438 * 3 2 1 36 36 H 1.08000 * 120.45856 * 0.06540 * 6 5 4 37 37 H 0.97001 * 119.99869 * 359.97438 * 10 8 7 38 38 H 1.09001 * 110.62758 * 359.97438 * 13 11 10 39 39 H 1.08997 * 110.62782 * 123.02328 * 13 11 10 40 40 H 1.09003 * 110.62143 * 190.31110 * 16 14 13 41 41 H 1.08995 * 110.62602 * 313.17653 * 16 14 13 42 42 H 1.09005 * 110.62702 * 241.50916 * 17 16 14 43 43 H 1.08996 * 110.62581 * 118.48594 * 17 16 14 44 44 H 0.97000 * 119.99785 * 180.02562 * 24 23 21 45 45 H 1.08001 * 119.92211 * 179.97438 * 29 7 6 46 46 H 1.08005 * 119.52048 * 179.72050 * 30 29 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3106 1.0904 0.0000 4 7 3.5789 0.6840 0.0006 5 6 3.6103 -0.6421 0.0015 6 6 4.6752 -1.5609 0.0019 7 6 4.3945 -2.9166 0.0024 8 6 5.4905 -3.9060 0.0034 9 8 6.6473 -3.5317 0.0033 10 7 5.2086 -5.2239 0.0043 11 6 6.2961 -6.2055 0.0059 12 1 7.1592 -5.8198 0.5483 13 6 6.6854 -6.5906 -1.4426 14 6 6.3889 -8.1194 -1.5032 15 1 6.2504 -8.5424 -2.4982 16 6 7.5040 -8.7827 -0.6399 17 6 7.1148 -8.3977 0.8086 18 6 5.8179 -7.5536 0.6231 19 1 5.1720 -7.4677 1.4969 20 7 5.2098 -8.2201 -0.5782 21 6 3.9640 -8.7548 -0.7709 22 1 3.2128 -8.6650 -0.0001 23 6 3.6667 -9.4123 -1.9567 24 7 4.6241 -9.6774 -2.8201 25 14 1.9078 -9.9206 -2.3271 26 1 1.2490 -8.8674 -3.1408 27 1 1.9107 -11.1997 -3.0817 28 1 1.1653 -10.0990 -1.0535 29 6 3.0428 -3.3442 0.0019 30 6 2.0475 -2.4388 -0.0042 31 7 2.3165 -1.0983 0.0005 32 1 -0.3634 0.0001 1.0276 33 1 -0.3634 0.8899 -0.5140 34 1 -0.3633 -0.8900 -0.5138 35 1 1.9781 2.1180 -0.0004 36 1 5.6978 -1.2137 0.0025 37 1 4.2857 -5.5225 0.0048 38 1 6.0690 -6.0515 -2.1621 39 1 7.7432 -6.3973 -1.6202 40 1 7.4937 -9.8655 -0.7653 41 1 8.4820 -8.3767 -0.8981 42 1 7.8995 -7.7987 1.2708 43 1 6.9114 -9.2894 1.4015 44 1 4.4162 -10.1365 -3.6489 45 1 2.8114 -4.3991 0.0018 46 1 1.0215 -2.7759 -0.0091 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001097073508.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:56 Heat of formation + Delta-G solvation = 83.043832 kcal Electronic energy + Delta-G solvation = -29331.427042 eV Core-core repulsion = 25415.834411 eV Total energy + Delta-G solvation = -3915.592632 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -43.93377 -41.40622 -40.09070 -38.03546 -35.41251 -35.01330 -34.40322 -32.40649 -31.10501 -30.95654 -30.44047 -29.48445 -27.69586 -26.11826 -25.07657 -24.32675 -22.77934 -22.18923 -21.54746 -21.36066 -20.33007 -18.84816 -18.78512 -18.42113 -17.74417 -17.16642 -17.00307 -16.73514 -16.03510 -15.98797 -15.73847 -15.55407 -15.13572 -14.85046 -14.58823 -14.35645 -14.15967 -13.89012 -13.72592 -13.63515 -13.33003 -12.93766 -12.91004 -12.85663 -12.82335 -12.74712 -12.69801 -12.08516 -11.92431 -11.90320 -11.87552 -11.71014 -11.36905 -11.21651 -11.04504 -10.80409 -10.74409 -10.04325 -9.92181 -8.85518 -8.79427 -7.75372 -5.12235 -0.64372 -0.00679 1.49037 1.51950 1.52590 1.56159 1.61012 1.90024 2.07937 2.53096 2.55400 3.17000 3.39349 3.40096 3.46889 3.54767 3.67202 3.91250 4.01086 4.05904 4.09184 4.28949 4.32126 4.34156 4.46808 4.49054 4.50916 4.64790 4.66711 4.76788 4.78475 4.84670 4.90398 4.94540 5.01972 5.10012 5.11111 5.18252 5.20702 5.35313 5.40220 5.53216 5.56525 5.60058 5.71454 5.91338 5.96386 6.25920 6.55572 6.73357 7.06527 7.15776 7.75236 8.61761 9.34284 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012519 B = 0.003190 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2236.022110 B = 8775.976073 C =10525.973375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.052 4.052 3 C 0.016 3.984 4 N -0.512 5.512 5 C 0.178 3.822 6 C -0.017 4.017 7 C -0.123 4.123 8 C 0.560 3.440 9 O -0.577 6.577 10 N -0.691 5.691 11 C 0.140 3.860 12 H 0.089 0.911 13 C -0.135 4.135 14 C 0.144 3.856 15 H 0.108 0.892 16 C -0.131 4.131 17 C -0.120 4.120 18 C 0.128 3.872 19 H 0.107 0.893 20 N -0.608 5.608 21 C -0.213 4.213 22 H 0.090 0.910 23 C -0.067 4.067 24 N -0.947 5.947 25 Si 0.971 3.029 26 H -0.291 1.291 27 H -0.307 1.307 28 H -0.266 1.266 29 C -0.120 4.120 30 C 0.059 3.941 31 N -0.356 5.356 32 H 0.089 0.911 33 H 0.105 0.895 34 H 0.077 0.923 35 H 0.211 0.789 36 H 0.151 0.849 37 H 0.409 0.591 38 H 0.038 0.962 39 H 0.067 0.933 40 H 0.035 0.965 41 H 0.068 0.932 42 H 0.081 0.919 43 H 0.058 0.942 44 H 0.244 0.756 45 H 0.175 0.825 46 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.637 15.331 7.920 19.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.167 4.167 3 C -0.137 4.137 4 N -0.233 5.233 5 C -0.062 4.062 6 C -0.039 4.039 7 C -0.132 4.132 8 C 0.348 3.652 9 O -0.458 6.458 10 N -0.340 5.340 11 C 0.034 3.966 12 H 0.107 0.893 13 C -0.176 4.176 14 C 0.037 3.963 15 H 0.126 0.874 16 C -0.170 4.170 17 C -0.160 4.160 18 C 0.021 3.979 19 H 0.125 0.875 20 N -0.330 5.330 21 C -0.342 4.342 22 H 0.108 0.892 23 C -0.260 4.260 24 N -0.597 5.597 25 Si 0.801 3.199 26 H -0.218 1.218 27 H -0.235 1.235 28 H -0.190 1.190 29 C -0.141 4.141 30 C -0.061 4.061 31 N -0.029 5.029 32 H 0.107 0.893 33 H 0.123 0.877 34 H 0.096 0.904 35 H 0.227 0.773 36 H 0.169 0.831 37 H 0.246 0.754 38 H 0.057 0.943 39 H 0.085 0.915 40 H 0.054 0.946 41 H 0.087 0.913 42 H 0.099 0.901 43 H 0.077 0.923 44 H 0.053 0.947 45 H 0.192 0.808 46 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -7.421 15.887 7.788 19.187 hybrid contribution -1.342 -1.234 -0.745 1.970 sum -8.763 14.652 7.043 18.469 Atomic orbital electron populations 1.20404 0.83013 1.05219 1.04270 1.22120 0.96680 0.84321 1.13547 1.23009 0.86973 1.00576 1.03145 1.70609 1.23960 1.06686 1.22027 1.20647 0.84624 0.91017 1.09925 1.20583 0.98069 0.89955 0.95271 1.19883 0.94266 0.92690 1.06329 1.18173 0.88025 0.82867 0.76164 1.90749 1.22191 1.80563 1.52329 1.45810 1.11248 1.04498 1.72453 1.22496 0.89300 0.88378 0.96469 0.89260 1.23336 0.99575 0.98601 0.96076 1.23415 0.85055 0.91383 0.96446 0.87423 1.22944 0.98441 0.99219 0.96423 1.22828 0.97335 0.99539 0.96272 1.23362 0.93661 0.90166 0.90726 0.87501 1.46734 1.10295 1.66361 1.09565 1.19384 0.87397 1.26886 1.00531 0.89199 1.25436 1.00667 1.01760 0.98126 1.69831 1.31504 1.47154 1.11181 0.85149 0.80461 0.76375 0.77867 1.21841 1.23460 1.19041 1.21078 0.89721 1.01682 1.01593 1.22021 1.02979 0.79084 1.02025 1.42971 1.08359 1.06835 1.44763 0.89290 0.87661 0.90429 0.77252 0.83136 0.75384 0.94302 0.91469 0.94645 0.91298 0.90054 0.92333 0.94665 0.80787 0.77462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.54 10.30 71.23 0.73 0.20 16 2 C -0.05 -0.90 7.02 41.20 0.29 -0.61 16 3 C 0.02 0.32 11.75 83.84 0.99 1.30 16 4 N -0.51 -14.52 11.31 -194.41 -2.20 -16.72 16 5 C 0.18 4.95 7.79 133.97 1.04 6.00 16 6 C -0.02 -0.50 9.70 22.91 0.22 -0.28 16 7 C -0.12 -3.32 5.90 -19.87 -0.12 -3.44 16 8 C 0.56 18.05 7.77 86.73 0.67 18.72 16 9 O -0.58 -22.40 16.01 -3.99 -0.06 -22.47 16 10 N -0.69 -21.34 5.03 -438.05 -2.20 -23.54 16 11 C 0.14 4.75 2.80 46.59 0.13 4.88 16 12 H 0.09 3.00 7.23 -2.39 -0.02 2.98 16 13 C -0.14 -5.26 6.23 32.21 0.20 -5.06 16 14 C 0.14 6.35 4.69 46.24 0.22 6.57 16 15 H 0.11 5.70 5.69 -2.39 -0.01 5.68 16 16 C -0.13 -4.98 6.44 32.21 0.21 -4.78 16 17 C -0.12 -3.95 6.44 32.21 0.21 -3.74 16 18 C 0.13 4.46 5.06 46.21 0.23 4.69 16 19 H 0.11 3.34 8.14 -2.39 -0.02 3.32 16 20 N -0.61 -26.96 2.98 -615.43 -1.84 -28.79 16 21 C -0.21 -10.43 10.56 84.03 0.89 -9.54 16 22 H 0.09 4.08 7.84 -2.91 -0.02 4.06 16 23 C -0.07 -3.48 5.47 84.86 0.46 -3.02 16 24 N -0.95 -53.22 10.61 21.65 0.23 -52.99 16 25 Si 0.97 42.25 29.56 68.60 2.03 44.28 16 26 H -0.29 -12.54 7.11 99.48 0.71 -11.83 16 27 H -0.31 -14.02 7.11 99.48 0.71 -13.31 16 28 H -0.27 -10.72 7.11 99.48 0.71 -10.02 16 29 C -0.12 -2.42 9.48 22.30 0.21 -2.21 16 30 C 0.06 1.00 10.80 83.09 0.90 1.90 16 31 N -0.36 -7.66 2.94 -339.14 -1.00 -8.66 16 32 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 34 H 0.08 0.46 8.12 -2.39 -0.02 0.44 16 35 H 0.21 2.61 8.06 -2.91 -0.02 2.58 16 36 H 0.15 4.54 7.67 -2.91 -0.02 4.52 16 37 H 0.41 11.49 6.72 -92.71 -0.62 10.86 16 38 H 0.04 1.64 7.98 -2.39 -0.02 1.62 16 39 H 0.07 2.43 7.82 -2.39 -0.02 2.41 16 40 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.07 2.30 7.82 -2.39 -0.02 2.28 16 42 H 0.08 2.24 7.82 -2.38 -0.02 2.22 16 43 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 44 H 0.24 13.59 8.31 -92.71 -0.77 12.82 16 45 H 0.17 2.83 6.46 -2.91 -0.02 2.81 16 46 H 0.21 1.71 8.03 -2.91 -0.02 1.68 16 Total: -1.00 -70.77 374.24 2.84 -67.93 By element: Atomic # 1 Polarization: 28.98 SS G_CDS: 0.39 Total: 29.37 kcal Atomic # 6 Polarization: 4.11 SS G_CDS: 7.49 Total: 11.60 kcal Atomic # 7 Polarization: -123.70 SS G_CDS: -7.00 Total: -130.71 kcal Atomic # 8 Polarization: -22.40 SS G_CDS: -0.06 Total: -22.47 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.28 kcal Total: -70.77 2.84 -67.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097073508.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.973 kcal (2) G-P(sol) polarization free energy of solvation -70.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds