Wall clock time and date at job start Sat Apr 11 2020 06:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.40185 * 120.19397 * 2 1 4 4 C 1.35261 * 120.12060 * 179.74664 * 3 2 1 5 5 N 1.35952 * 120.64248 * 0.54896 * 4 3 2 6 6 C 1.36577 * 120.66886 * 359.70484 * 5 4 3 7 7 C 1.36284 * 120.19978 * 180.27379 * 2 1 3 8 8 N 1.33194 * 108.61046 * 180.02562 * 6 5 4 9 9 C 1.32328 * 109.81819 * 0.02562 * 8 6 5 10 10 C 1.38293 * 132.39828 * 179.75545 * 5 4 3 11 11 C 1.41817 * 126.78465 * 359.95837 * 10 5 4 12 12 O 1.21776 * 119.99853 * 354.66311 * 11 10 5 13 13 N 1.34774 * 119.99887 * 174.66791 * 11 10 5 14 14 C 1.46504 * 120.00157 * 185.28958 * 13 11 10 15 15 H 1.08995 * 110.55468 * 32.09855 * 14 13 11 16 16 C 1.54849 * 110.62693 * 269.02658 * 14 13 11 17 17 C 1.55845 * 103.44780 * 241.50838 * 16 14 13 18 18 H 1.08997 * 116.12682 * 159.14828 * 17 16 14 19 19 C 1.55851 * 105.06206 * 288.17836 * 17 16 14 20 20 C 1.54852 * 103.44517 * 71.82397 * 19 17 16 21 21 C 1.55841 * 103.44785 * 359.97438 * 20 19 17 22 22 H 1.08997 * 116.13197 * 159.14994 * 21 20 19 23 23 N 1.50241 * 101.05173 * 32.94125 * 21 20 19 24 24 C 1.36937 * 130.84368 * 126.04982 * 23 21 20 25 25 H 1.08001 * 119.99313 * 6.23897 * 24 23 21 26 26 C 1.38811 * 120.00043 * 186.24175 * 24 23 21 27 27 N 1.31617 * 120.00087 * 354.38558 * 26 24 23 28 28 Si 1.86801 * 119.99694 * 174.38624 * 26 24 23 29 29 H 1.48501 * 109.46955 * 94.99226 * 28 26 24 30 30 H 1.48500 * 109.46768 * 214.99206 * 28 26 24 31 31 H 1.48504 * 109.47118 * 334.99262 * 28 26 24 32 32 H 1.08996 * 109.46678 * 269.72299 * 1 2 3 33 33 H 1.08997 * 109.47265 * 29.72290 * 1 2 3 34 34 H 1.08993 * 109.46737 * 149.72204 * 1 2 3 35 35 H 1.07993 * 119.93945 * 359.97438 * 3 2 1 36 36 H 1.08010 * 119.67634 * 180.25403 * 4 3 2 37 37 H 1.08000 * 120.30322 * 359.95793 * 7 2 1 38 38 H 1.07996 * 125.89808 * 179.97438 * 9 8 6 39 39 H 0.97005 * 120.00004 * 5.29504 * 13 11 10 40 40 H 1.08998 * 110.62730 * 0.02562 * 16 14 13 41 41 H 1.09006 * 110.62631 * 123.01931 * 16 14 13 42 42 H 1.08996 * 110.62424 * 190.31047 * 19 17 16 43 43 H 1.08996 * 110.62208 * 313.17533 * 19 17 16 44 44 H 1.09003 * 110.62234 * 241.51377 * 20 19 17 45 45 H 1.08995 * 110.63051 * 118.48985 * 20 19 17 46 46 H 0.96997 * 119.99975 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2120 1.2117 0.0000 4 6 3.5646 1.2099 0.0052 5 7 4.2561 0.0394 -0.0008 6 6 3.5990 -1.1579 -0.0061 7 6 2.1925 -1.1779 -0.0056 8 7 4.5010 -2.1379 -0.0107 9 6 5.7208 -1.6248 -0.0081 10 6 5.6097 -0.2441 -0.0020 11 6 6.6737 0.6936 0.0022 12 8 6.4362 1.8843 -0.0906 13 7 7.9476 0.2667 0.1087 14 6 9.0378 1.2378 0.2298 15 1 8.7013 2.1264 0.7637 16 6 9.5916 1.6132 -1.1667 17 6 11.0782 1.1497 -1.1037 18 1 11.5712 0.9867 -2.0620 19 6 11.7788 2.1649 -0.1511 20 6 11.2251 1.7894 1.2454 21 6 10.2648 0.5990 0.9464 22 1 10.0308 -0.0522 1.7886 23 7 10.9663 -0.0532 -0.2110 24 6 11.3772 -1.3463 -0.3958 25 1 11.1167 -2.1043 0.3281 26 6 12.1286 -1.6829 -1.5134 27 7 12.3526 -0.7860 -2.4502 28 14 12.8219 -3.4087 -1.6876 29 1 11.8940 -4.2350 -2.5010 30 1 14.1454 -3.3451 -2.3580 31 1 12.9772 -4.0179 -0.3422 32 1 -0.3632 -0.0050 1.0276 33 1 -0.3633 0.8924 -0.5095 34 1 -0.3632 -0.8874 -0.5181 35 1 1.6742 2.1482 -0.0004 36 1 4.1006 2.1477 0.0093 37 1 1.6608 -2.1179 -0.0094 38 1 6.6437 -2.1857 -0.0103 39 1 8.1426 -0.6835 0.1052 40 1 9.0547 1.0772 -1.9494 41 1 9.5314 2.6897 -1.3270 42 1 12.8608 2.0368 -0.1822 43 1 11.5067 3.1875 -0.4126 44 1 10.6761 2.6257 1.6783 45 1 12.0324 1.4752 1.9069 46 1 12.8774 -1.0213 -3.2313 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001097123820.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:02 Heat of formation + Delta-G solvation = 97.517859 kcal Electronic energy + Delta-G solvation = -29447.856509 eV Core-core repulsion = 25532.891518 eV Total energy + Delta-G solvation = -3914.964991 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -43.01585 -39.77334 -38.43009 -37.82017 -34.52744 -33.74399 -32.56295 -31.13547 -30.20956 -29.13929 -28.95471 -28.18461 -26.75867 -24.25601 -23.86612 -23.51206 -21.63364 -21.34842 -20.09031 -19.82145 -18.81429 -17.98095 -17.07200 -17.00139 -16.53402 -16.26803 -15.65036 -15.27397 -14.84991 -14.77568 -14.35393 -14.22896 -13.94254 -13.89560 -13.70348 -13.44269 -12.92877 -12.82650 -12.42688 -12.06941 -12.04538 -11.91819 -11.85119 -11.31689 -11.11695 -10.95535 -10.89752 -10.80541 -10.54767 -10.46881 -10.35817 -10.10432 -9.94204 -9.78803 -9.35285 -9.17121 -9.07673 -8.93663 -8.57148 -7.93427 -6.95891 -5.76987 -3.15426 0.51347 0.67380 2.22281 2.28133 3.26982 3.36530 3.42439 3.44119 3.54712 3.69243 3.91504 4.31352 4.40110 4.41665 4.56419 4.82791 4.94734 5.02367 5.10482 5.17219 5.22863 5.33357 5.37350 5.43419 5.60084 5.63246 5.66604 5.74147 5.87206 5.95575 6.04014 6.07090 6.13190 6.25297 6.28254 6.34543 6.41315 6.47539 6.59808 6.72427 6.79983 6.81810 6.93804 7.08456 7.31097 7.47060 7.58229 7.77470 7.91641 8.15331 8.49489 9.05309 9.69095 10.50174 11.32416 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015861 B = 0.002953 C = 0.002609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.932587 B = 9479.256702 C =10731.126243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.057 4.057 3 C -0.149 4.149 4 C 0.083 3.917 5 N -0.326 5.326 6 C 0.243 3.757 7 C -0.096 4.096 8 N -0.497 5.497 9 C 0.109 3.891 10 C -0.137 4.137 11 C 0.593 3.407 12 O -0.567 6.567 13 N -0.692 5.692 14 C 0.132 3.868 15 H 0.080 0.920 16 C -0.143 4.143 17 C 0.154 3.846 18 H 0.152 0.848 19 C -0.138 4.138 20 C -0.126 4.126 21 C 0.125 3.875 22 H 0.089 0.911 23 N -0.590 5.590 24 C -0.217 4.217 25 H 0.079 0.921 26 C -0.008 4.008 27 N -0.917 5.917 28 Si 0.913 3.087 29 H -0.290 1.290 30 H -0.291 1.291 31 H -0.281 1.281 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.154 0.846 36 H 0.178 0.822 37 H 0.153 0.847 38 H 0.193 0.807 39 H 0.404 0.596 40 H 0.059 0.941 41 H 0.054 0.946 42 H 0.055 0.945 43 H 0.048 0.952 44 H 0.051 0.949 45 H 0.058 0.942 46 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.544 4.229 5.872 20.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.064 4.064 3 C -0.170 4.170 4 C -0.041 4.041 5 N 0.004 4.996 6 C 0.003 3.997 7 C -0.116 4.116 8 N -0.216 5.216 9 C -0.051 4.051 10 C -0.251 4.251 11 C 0.381 3.619 12 O -0.449 6.449 13 N -0.341 5.341 14 C 0.026 3.974 15 H 0.098 0.902 16 C -0.184 4.184 17 C 0.047 3.953 18 H 0.169 0.831 19 C -0.177 4.177 20 C -0.166 4.166 21 C 0.016 3.984 22 H 0.107 0.893 23 N -0.311 5.311 24 C -0.345 4.345 25 H 0.097 0.903 26 C -0.204 4.204 27 N -0.565 5.565 28 Si 0.743 3.257 29 H -0.217 1.217 30 H -0.217 1.217 31 H -0.207 1.207 32 H 0.096 0.904 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.172 0.828 36 H 0.195 0.805 37 H 0.171 0.829 38 H 0.210 0.790 39 H 0.239 0.761 40 H 0.078 0.922 41 H 0.072 0.928 42 H 0.074 0.926 43 H 0.067 0.933 44 H 0.070 0.930 45 H 0.076 0.924 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -19.638 4.021 5.655 20.828 hybrid contribution 0.763 -0.449 -0.132 0.895 sum -18.875 3.572 5.523 19.988 Atomic orbital electron populations 1.20787 0.89451 1.03555 1.03013 1.19856 0.97175 0.92031 0.97312 1.20830 0.91904 0.99442 1.04782 1.22070 0.92962 0.89804 0.99281 1.42422 1.06524 1.07581 1.43053 1.21072 0.94511 0.80363 1.03757 1.20122 0.88023 0.99760 1.03738 1.70516 0.99058 1.28711 1.23326 1.23294 0.96639 0.89532 0.95655 1.20025 0.82646 0.96396 1.26004 1.15418 0.82337 0.86855 0.77311 1.90760 1.84648 1.16902 1.52582 1.45696 1.04736 1.11273 1.72412 1.22676 0.85867 0.90752 0.98084 0.90192 1.23464 1.00345 0.98950 0.95600 1.23737 0.90891 0.83477 0.97164 0.83108 1.23049 1.00337 0.98272 0.96075 1.22854 0.98817 0.97311 0.97659 1.23173 0.90753 0.92910 0.91561 0.89309 1.46530 1.66104 1.05417 1.13056 1.18993 1.26526 0.83113 1.05851 0.90335 1.24726 1.00518 0.98021 0.97105 1.69483 1.43903 1.32861 1.10211 0.86085 0.78529 0.83492 0.77563 1.21701 1.21704 1.20693 0.90387 0.90823 0.90820 0.82846 0.80507 0.82918 0.78980 0.76067 0.92195 0.92774 0.92587 0.93349 0.93044 0.92355 0.93528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.53 10.03 36.01 0.36 -0.17 16 2 C -0.06 -0.47 5.88 -104.59 -0.62 -1.09 16 3 C -0.15 -1.29 9.68 -39.91 -0.39 -1.67 16 4 C 0.08 1.00 10.51 -16.79 -0.18 0.82 16 5 N -0.33 -4.75 2.96 -60.14 -0.18 -4.93 16 6 C 0.24 3.41 7.77 -156.07 -1.21 2.20 16 7 C -0.10 -1.00 9.75 -39.37 -0.38 -1.38 16 8 N -0.50 -7.69 11.25 -12.27 -0.14 -7.83 16 9 C 0.11 1.62 11.32 -17.23 -0.20 1.43 16 10 C -0.14 -2.19 6.83 -83.47 -0.57 -2.76 16 11 C 0.59 10.39 7.59 -14.89 -0.11 10.28 16 12 O -0.57 -11.08 15.06 5.12 0.08 -11.01 16 13 N -0.69 -11.95 5.05 -54.25 -0.27 -12.23 16 14 C 0.13 2.43 2.76 -65.47 -0.18 2.25 16 15 H 0.08 1.46 7.31 -51.93 -0.38 1.08 16 16 C -0.14 -2.89 6.23 -24.24 -0.15 -3.04 16 17 C 0.15 3.45 4.72 -62.81 -0.30 3.15 16 18 H 0.15 3.91 5.55 -51.93 -0.29 3.62 16 19 C -0.14 -2.69 6.44 -24.23 -0.16 -2.85 16 20 C -0.13 -2.26 6.44 -24.24 -0.16 -2.41 16 21 C 0.12 2.37 5.06 -62.83 -0.32 2.06 16 22 H 0.09 1.59 8.14 -51.93 -0.42 1.16 16 23 N -0.59 -13.67 2.98 -145.87 -0.44 -14.10 16 24 C -0.22 -5.56 10.58 -15.06 -0.16 -5.72 16 25 H 0.08 1.93 7.83 -52.49 -0.41 1.52 16 26 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 27 N -0.92 -25.47 10.50 55.49 0.58 -24.89 16 28 Si 0.91 21.26 29.56 -169.99 -5.02 16.23 16 29 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 30 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 31 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 32 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.07 0.27 8.09 -51.93 -0.42 -0.15 16 34 H 0.07 0.30 8.08 -51.93 -0.42 -0.12 16 35 H 0.15 0.82 8.06 -52.49 -0.42 0.40 16 36 H 0.18 2.15 6.81 -52.48 -0.36 1.79 16 37 H 0.15 1.25 8.06 -52.49 -0.42 0.83 16 38 H 0.19 2.42 7.38 -52.49 -0.39 2.03 16 39 H 0.40 6.68 7.45 -40.82 -0.30 6.37 16 40 H 0.06 1.32 7.98 -51.93 -0.41 0.90 16 41 H 0.05 1.02 7.82 -51.93 -0.41 0.62 16 42 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 43 H 0.05 0.84 7.82 -51.93 -0.41 0.44 16 44 H 0.05 0.81 7.82 -51.93 -0.41 0.40 16 45 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 46 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 372.69 15.07 5.62 5.62 Total: -1.00 -31.70 372.69 -10.85 -42.55 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: -6.27 Total: 9.78 kcal Atomic # 6 Polarization: 5.61 SS G_CDS: -4.81 Total: 0.80 kcal Atomic # 7 Polarization: -63.53 SS G_CDS: -0.44 Total: -63.98 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: 0.08 Total: -11.01 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.70 -10.85 -42.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097123820.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.072 kcal (2) G-P(sol) polarization free energy of solvation -31.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds