Wall clock time and date at job start Sat Apr 11 2020 06:06:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.40185 * 120.19397 * 2 1 4 4 C 1.35261 * 120.12060 * 179.74664 * 3 2 1 5 5 N 1.35952 * 120.64248 * 0.54896 * 4 3 2 6 6 C 1.36577 * 120.66886 * 359.70484 * 5 4 3 7 7 C 1.36284 * 120.19978 * 180.27379 * 2 1 3 8 8 N 1.33194 * 108.61046 * 180.02562 * 6 5 4 9 9 C 1.32328 * 109.81819 * 0.02562 * 8 6 5 10 10 C 1.38293 * 132.39828 * 179.75545 * 5 4 3 11 11 C 1.41817 * 126.78465 * 359.95837 * 10 5 4 12 12 O 1.21776 * 119.99853 * 354.66311 * 11 10 5 13 13 N 1.34774 * 119.99887 * 174.66791 * 11 10 5 14 14 C 1.46504 * 120.00157 * 185.28958 * 13 11 10 15 15 H 1.08995 * 110.55468 * 32.09855 * 14 13 11 16 16 C 1.54849 * 110.62693 * 269.02658 * 14 13 11 17 17 C 1.55845 * 103.44780 * 241.50838 * 16 14 13 18 18 H 1.08997 * 116.12682 * 159.14828 * 17 16 14 19 19 C 1.55851 * 105.06206 * 288.17836 * 17 16 14 20 20 C 1.54852 * 103.44517 * 71.82397 * 19 17 16 21 21 C 1.55841 * 103.44785 * 359.97438 * 20 19 17 22 22 H 1.08997 * 116.13197 * 159.14994 * 21 20 19 23 23 N 1.50241 * 101.05173 * 32.94125 * 21 20 19 24 24 C 1.36937 * 130.84368 * 126.04982 * 23 21 20 25 25 H 1.08001 * 119.99313 * 6.23897 * 24 23 21 26 26 C 1.38811 * 120.00043 * 186.24175 * 24 23 21 27 27 N 1.31617 * 120.00087 * 354.38558 * 26 24 23 28 28 Si 1.86801 * 119.99694 * 174.38624 * 26 24 23 29 29 H 1.48501 * 109.46955 * 94.99226 * 28 26 24 30 30 H 1.48500 * 109.46768 * 214.99206 * 28 26 24 31 31 H 1.48504 * 109.47118 * 334.99262 * 28 26 24 32 32 H 1.08996 * 109.46678 * 269.72299 * 1 2 3 33 33 H 1.08997 * 109.47265 * 29.72290 * 1 2 3 34 34 H 1.08993 * 109.46737 * 149.72204 * 1 2 3 35 35 H 1.07993 * 119.93945 * 359.97438 * 3 2 1 36 36 H 1.08010 * 119.67634 * 180.25403 * 4 3 2 37 37 H 1.08000 * 120.30322 * 359.95793 * 7 2 1 38 38 H 1.07996 * 125.89808 * 179.97438 * 9 8 6 39 39 H 0.97005 * 120.00004 * 5.29504 * 13 11 10 40 40 H 1.08998 * 110.62730 * 0.02562 * 16 14 13 41 41 H 1.09006 * 110.62631 * 123.01931 * 16 14 13 42 42 H 1.08996 * 110.62424 * 190.31047 * 19 17 16 43 43 H 1.08996 * 110.62208 * 313.17533 * 19 17 16 44 44 H 1.09003 * 110.62234 * 241.51377 * 20 19 17 45 45 H 1.08995 * 110.63051 * 118.48985 * 20 19 17 46 46 H 0.96997 * 119.99975 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2120 1.2117 0.0000 4 6 3.5646 1.2099 0.0052 5 7 4.2561 0.0394 -0.0008 6 6 3.5990 -1.1579 -0.0061 7 6 2.1925 -1.1779 -0.0056 8 7 4.5010 -2.1379 -0.0107 9 6 5.7208 -1.6248 -0.0081 10 6 5.6097 -0.2441 -0.0020 11 6 6.6737 0.6936 0.0022 12 8 6.4362 1.8843 -0.0906 13 7 7.9476 0.2667 0.1087 14 6 9.0378 1.2378 0.2298 15 1 8.7013 2.1264 0.7637 16 6 9.5916 1.6132 -1.1667 17 6 11.0782 1.1497 -1.1037 18 1 11.5712 0.9867 -2.0620 19 6 11.7788 2.1649 -0.1511 20 6 11.2251 1.7894 1.2454 21 6 10.2648 0.5990 0.9464 22 1 10.0308 -0.0522 1.7886 23 7 10.9663 -0.0532 -0.2110 24 6 11.3772 -1.3463 -0.3958 25 1 11.1167 -2.1043 0.3281 26 6 12.1286 -1.6829 -1.5134 27 7 12.3526 -0.7860 -2.4502 28 14 12.8219 -3.4087 -1.6876 29 1 11.8940 -4.2350 -2.5010 30 1 14.1454 -3.3451 -2.3580 31 1 12.9772 -4.0179 -0.3422 32 1 -0.3632 -0.0050 1.0276 33 1 -0.3633 0.8924 -0.5095 34 1 -0.3632 -0.8874 -0.5181 35 1 1.6742 2.1482 -0.0004 36 1 4.1006 2.1477 0.0093 37 1 1.6608 -2.1179 -0.0094 38 1 6.6437 -2.1857 -0.0103 39 1 8.1426 -0.6835 0.1052 40 1 9.0547 1.0772 -1.9494 41 1 9.5314 2.6897 -1.3270 42 1 12.8608 2.0368 -0.1822 43 1 11.5067 3.1875 -0.4126 44 1 10.6761 2.6257 1.6783 45 1 12.0324 1.4752 1.9069 46 1 12.8774 -1.0213 -3.2313 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001097123820.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:01 Heat of formation + Delta-G solvation = 79.536869 kcal Electronic energy + Delta-G solvation = -29448.636223 eV Core-core repulsion = 25532.891518 eV Total energy + Delta-G solvation = -3915.744705 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -44.02617 -41.26559 -39.82591 -38.77399 -35.60232 -35.04611 -34.42072 -32.13247 -31.10137 -30.96380 -30.39715 -29.53006 -27.81988 -26.09784 -24.74586 -24.67996 -22.85507 -22.40933 -21.52320 -21.39681 -20.37719 -19.19594 -18.83084 -17.96162 -17.69163 -17.34007 -17.03466 -16.71390 -16.13355 -15.90329 -15.67998 -15.56815 -15.41698 -15.12891 -14.72158 -14.44692 -14.25239 -13.72500 -13.65957 -13.48815 -13.02817 -12.91566 -12.88541 -12.88324 -12.73070 -12.72026 -12.68398 -12.09569 -11.94544 -11.89337 -11.73622 -11.59096 -11.57966 -11.21873 -11.02772 -10.84446 -10.74722 -10.10677 -9.96821 -8.95715 -8.83855 -7.75445 -5.14099 -0.38457 -0.26089 1.19282 1.25460 1.50211 1.51194 1.59178 2.25941 2.38996 2.40567 2.51926 3.02686 3.37645 3.41079 3.47249 3.67267 3.72176 3.85417 4.01433 4.05429 4.08722 4.23761 4.29149 4.37145 4.46840 4.48913 4.60719 4.65510 4.71871 4.75231 4.84459 4.85909 4.91310 4.93167 5.10125 5.17627 5.19093 5.20007 5.23078 5.35667 5.39198 5.50633 5.54493 5.59456 5.71326 5.85672 5.91209 6.28563 6.46594 6.59776 7.07254 7.14064 7.74360 8.60317 9.32494 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015861 B = 0.002953 C = 0.002609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.932587 B = 9479.256702 C =10731.126243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.037 4.037 3 C -0.123 4.123 4 C 0.049 3.951 5 N -0.332 5.332 6 C 0.234 3.766 7 C -0.113 4.113 8 N -0.527 5.527 9 C 0.112 3.888 10 C -0.174 4.174 11 C 0.597 3.403 12 O -0.593 6.593 13 N -0.693 5.693 14 C 0.145 3.855 15 H 0.090 0.910 16 C -0.133 4.133 17 C 0.140 3.860 18 H 0.114 0.886 19 C -0.131 4.131 20 C -0.117 4.117 21 C 0.127 3.873 22 H 0.104 0.896 23 N -0.609 5.609 24 C -0.213 4.213 25 H 0.087 0.913 26 C -0.066 4.066 27 N -0.947 5.947 28 Si 0.971 3.029 29 H -0.293 1.293 30 H -0.301 1.301 31 H -0.269 1.269 32 H 0.095 0.905 33 H 0.092 0.908 34 H 0.084 0.916 35 H 0.194 0.806 36 H 0.169 0.831 37 H 0.174 0.826 38 H 0.205 0.795 39 H 0.406 0.594 40 H 0.032 0.968 41 H 0.067 0.933 42 H 0.037 0.963 43 H 0.071 0.929 44 H 0.082 0.918 45 H 0.060 0.940 46 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.790 4.797 7.564 24.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.043 4.043 3 C -0.143 4.143 4 C -0.076 4.076 5 N -0.001 5.001 6 C -0.006 4.006 7 C -0.133 4.133 8 N -0.246 5.246 9 C -0.049 4.049 10 C -0.287 4.287 11 C 0.387 3.613 12 O -0.477 6.477 13 N -0.341 5.341 14 C 0.038 3.962 15 H 0.107 0.893 16 C -0.174 4.174 17 C 0.034 3.966 18 H 0.131 0.869 19 C -0.170 4.170 20 C -0.157 4.157 21 C 0.019 3.981 22 H 0.122 0.878 23 N -0.331 5.331 24 C -0.342 4.342 25 H 0.105 0.895 26 C -0.259 4.259 27 N -0.596 5.596 28 Si 0.801 3.199 29 H -0.221 1.221 30 H -0.229 1.229 31 H -0.194 1.194 32 H 0.113 0.887 33 H 0.111 0.889 34 H 0.103 0.897 35 H 0.211 0.789 36 H 0.186 0.814 37 H 0.191 0.809 38 H 0.222 0.778 39 H 0.242 0.758 40 H 0.051 0.949 41 H 0.086 0.914 42 H 0.056 0.944 43 H 0.089 0.911 44 H 0.101 0.899 45 H 0.079 0.921 46 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -22.911 4.600 7.385 24.508 hybrid contribution 1.496 -0.554 -0.654 1.724 sum -21.416 4.046 6.732 22.810 Atomic orbital electron populations 1.20931 0.86137 1.05138 1.04470 1.20375 0.99256 0.90883 0.93800 1.21404 0.90557 1.01436 1.00862 1.22348 0.94320 0.89005 1.01891 1.42523 1.06090 1.08453 1.43064 1.21683 0.95772 0.79982 1.03119 1.20552 0.86490 1.01769 1.04461 1.70494 0.99438 1.29611 1.25072 1.23520 0.97188 0.89423 0.94796 1.19798 0.83215 0.96355 1.29336 1.15553 0.82558 0.86754 0.76440 1.90725 1.84992 1.17926 1.54042 1.45612 1.04632 1.11176 1.72673 1.22488 0.85878 0.91247 0.96560 0.89253 1.23324 0.98669 0.99269 0.96104 1.23562 0.92202 0.84490 0.96387 0.86900 1.22943 0.98943 0.98616 0.96499 1.22808 0.98688 0.97667 0.96525 1.23382 0.90622 0.93263 0.90784 0.87805 1.46708 1.66521 1.05001 1.14832 1.19359 1.25023 0.84541 1.05300 0.89512 1.25426 1.01925 1.01031 0.97484 1.69735 1.45094 1.34247 1.10572 0.85161 0.77026 0.80112 0.77619 1.22065 1.22857 1.19406 0.88705 0.88903 0.89707 0.78865 0.81351 0.80887 0.77823 0.75791 0.94941 0.91450 0.94390 0.91071 0.89912 0.92097 0.94574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.49 10.03 71.24 0.71 0.23 16 2 C -0.04 -0.47 5.88 -19.85 -0.12 -0.58 16 3 C -0.12 -1.72 9.68 22.06 0.21 -1.51 16 4 C 0.05 1.12 10.51 83.37 0.88 2.00 16 5 N -0.33 -9.68 2.96 -344.19 -1.02 -10.70 16 6 C 0.23 6.45 7.77 134.01 1.04 7.49 16 7 C -0.11 -2.09 9.75 22.40 0.22 -1.87 16 8 N -0.53 -16.45 11.25 -192.74 -2.17 -18.62 16 9 C 0.11 3.43 11.32 84.69 0.96 4.39 16 10 C -0.17 -5.69 6.83 39.08 0.27 -5.42 16 11 C 0.60 21.34 7.59 85.13 0.65 21.99 16 12 O -0.59 -23.48 15.06 -4.59 -0.07 -23.55 16 13 N -0.69 -24.13 5.05 -443.72 -2.24 -26.37 16 14 C 0.14 5.22 2.76 46.59 0.13 5.35 16 15 H 0.09 3.11 7.31 -2.39 -0.02 3.10 16 16 C -0.13 -5.45 6.23 32.21 0.20 -5.25 16 17 C 0.14 6.42 4.72 46.24 0.22 6.64 16 18 H 0.11 6.16 5.55 -2.39 -0.01 6.14 16 19 C -0.13 -5.03 6.44 32.21 0.21 -4.82 16 20 C -0.12 -3.94 6.44 32.21 0.21 -3.73 16 21 C 0.13 4.67 5.06 46.21 0.23 4.91 16 22 H 0.10 3.52 8.14 -2.39 -0.02 3.50 16 23 N -0.61 -28.42 2.98 -615.40 -1.84 -30.26 16 24 C -0.21 -11.04 10.58 84.03 0.89 -10.15 16 25 H 0.09 4.24 7.83 -2.91 -0.02 4.21 16 26 C -0.07 -3.59 5.50 84.86 0.47 -3.12 16 27 N -0.95 -54.84 10.50 21.65 0.23 -54.62 16 28 Si 0.97 44.74 29.56 68.60 2.03 46.77 16 29 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 30 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 31 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 32 H 0.09 0.23 8.14 -2.39 -0.02 0.21 16 33 H 0.09 0.14 8.09 -2.39 -0.02 0.12 16 34 H 0.08 0.27 8.08 -2.39 -0.02 0.25 16 35 H 0.19 1.11 8.06 -2.91 -0.02 1.09 16 36 H 0.17 4.10 6.81 -2.91 -0.02 4.08 16 37 H 0.17 2.38 8.06 -2.91 -0.02 2.36 16 38 H 0.21 5.33 7.38 -2.91 -0.02 5.31 16 39 H 0.41 13.67 7.45 -92.70 -0.69 12.98 16 40 H 0.03 1.48 7.98 -2.39 -0.02 1.46 16 41 H 0.07 2.53 7.82 -2.38 -0.02 2.51 16 42 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 43 H 0.07 2.38 7.82 -2.39 -0.02 2.36 16 44 H 0.08 2.30 7.82 -2.39 -0.02 2.28 16 45 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 46 H 0.24 14.00 8.31 -92.71 -0.77 13.23 16 Total: -1.00 -72.05 372.69 2.62 -69.42 By element: Atomic # 1 Polarization: 31.05 SS G_CDS: 0.33 Total: 31.37 kcal Atomic # 6 Polarization: 9.17 SS G_CDS: 7.37 Total: 16.54 kcal Atomic # 7 Polarization: -133.53 SS G_CDS: -7.03 Total: -140.56 kcal Atomic # 8 Polarization: -23.48 SS G_CDS: -0.07 Total: -23.55 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -72.05 2.62 -69.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097123820.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.962 kcal (2) G-P(sol) polarization free energy of solvation -72.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds