Wall clock time and date at job start Sat Apr 11 2020 06:06:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.40161 * 120.29623 * 2 1 4 4 C 1.35186 * 120.31848 * 179.55272 * 3 2 1 5 5 N 1.36240 * 120.70466 * 0.67403 * 4 3 2 6 6 N 1.40020 * 132.01250 * 179.17626 * 5 4 3 7 7 C 1.30735 * 109.60430 * 180.02562 * 6 5 4 8 8 C 1.40555 * 108.74574 * 359.97438 * 7 6 5 9 9 C 1.46566 * 126.58188 * 179.97438 * 8 7 6 10 10 O 1.21718 * 120.00103 * 180.02562 * 9 8 7 11 11 N 1.34778 * 120.00103 * 0.03723 * 9 8 7 12 12 C 1.46500 * 119.99994 * 179.97438 * 11 9 8 13 13 H 1.09000 * 110.68572 * 32.00973 * 12 11 9 14 14 C 1.55485 * 110.75411 * 268.95217 * 12 11 9 15 15 C 1.55853 * 103.32237 * 241.51531 * 14 12 11 16 16 H 1.09001 * 116.11977 * 159.23872 * 15 14 12 17 17 C 1.55386 * 105.04276 * 288.04016 * 15 14 12 18 18 C 1.54849 * 103.48427 * 72.08410 * 17 15 14 19 19 C 1.55845 * 110.62147 * 154.99665 * 12 11 9 20 20 H 1.08997 * 116.13339 * 319.33734 * 19 12 11 21 21 N 1.50232 * 101.05167 * 33.02759 * 15 14 12 22 22 C 1.36938 * 130.84076 * 126.06520 * 21 15 14 23 23 H 1.07999 * 120.00325 * 179.65847 * 22 21 15 24 24 C 1.38815 * 119.99817 * 359.66493 * 22 21 15 25 25 N 1.31621 * 119.99673 * 359.71804 * 24 22 21 26 26 Si 1.86795 * 120.00115 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.47163 * 59.99668 * 26 24 22 28 28 H 1.48505 * 109.47234 * 179.97438 * 26 24 22 29 29 H 1.48492 * 109.47124 * 299.99692 * 26 24 22 30 30 C 1.36570 * 120.08273 * 359.50536 * 5 4 3 31 31 C 1.36443 * 120.29744 * 179.97438 * 2 1 3 32 32 H 1.08997 * 109.47052 * 270.02368 * 1 2 3 33 33 H 1.09001 * 109.47264 * 30.02101 * 1 2 3 34 34 H 1.08991 * 109.46860 * 150.02482 * 1 2 3 35 35 H 1.08004 * 119.83896 * 0.02562 * 3 2 1 36 36 H 1.08005 * 119.64310 * 179.88536 * 4 3 2 37 37 H 1.07999 * 125.62802 * 180.02562 * 7 6 5 38 38 H 0.96997 * 119.99373 * 359.97438 * 11 9 8 39 39 H 1.08999 * 110.60571 * 123.10462 * 14 12 11 40 40 H 1.08989 * 110.75615 * 359.97438 * 14 12 11 41 41 H 1.08998 * 110.71948 * 313.52463 * 17 15 14 42 42 H 1.09005 * 110.49328 * 190.52550 * 17 15 14 43 43 H 1.09004 * 110.62288 * 241.37847 * 18 17 15 44 44 H 1.08995 * 110.76929 * 118.42686 * 18 17 15 45 45 H 0.97000 * 120.00043 * 180.02562 * 25 24 22 46 46 H 1.08004 * 120.36789 * 0.05297 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2141 1.2102 0.0000 4 6 3.5659 1.2107 0.0091 5 7 4.2621 0.0396 0.0046 6 7 5.6352 -0.2343 -0.0032 7 6 5.8244 -1.5279 -0.0055 8 6 4.5729 -2.1675 0.0015 9 6 4.3306 -3.6130 0.0012 10 8 3.1904 -4.0390 0.0072 11 7 5.3704 -4.4705 -0.0056 12 6 5.1282 -5.9154 -0.0053 13 1 4.2086 -6.1517 -0.5407 14 6 5.0718 -6.4643 1.4483 15 6 6.2551 -7.4775 1.4957 16 1 6.6337 -7.7271 2.4869 17 6 5.7868 -8.6850 0.6373 18 6 5.8442 -8.1418 -0.8117 19 6 6.3376 -6.6747 -0.6295 20 1 6.7888 -6.2175 -1.5100 21 7 7.2352 -6.8193 0.5666 22 6 8.5452 -6.4656 0.7510 23 1 9.0965 -5.9983 -0.0516 24 6 9.1645 -6.7076 1.9695 25 7 8.4910 -7.2721 2.9493 26 14 10.9516 -6.2257 2.2208 27 1 11.1014 -4.7610 2.0269 28 1 11.3730 -6.5879 3.5980 29 1 11.8011 -6.9445 1.2377 30 6 3.5961 -1.1527 0.0010 31 6 2.1954 -1.1781 0.0005 32 1 -0.3633 0.0004 1.0276 33 1 -0.3634 0.8898 -0.5142 34 1 -0.3633 -0.8901 -0.5134 35 1 1.6763 2.1468 0.0004 36 1 4.0998 2.1496 0.0071 37 1 6.7841 -2.0233 -0.0108 38 1 6.2789 -4.1310 -0.0106 39 1 4.1244 -6.9717 1.6303 40 1 5.2244 -5.6622 2.1703 41 1 4.7687 -8.9728 0.8994 42 1 6.4684 -9.5269 0.7589 43 1 4.8545 -8.1602 -1.2681 44 1 6.5527 -8.7135 -1.4110 45 1 8.9237 -7.4409 3.8009 46 1 1.6663 -2.1196 0.0001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001097265136.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:06 Heat of formation + Delta-G solvation = 110.814252 kcal Electronic energy + Delta-G solvation = -29443.355264 eV Core-core repulsion = 25528.966848 eV Total energy + Delta-G solvation = -3914.388416 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.24510 -39.55875 -38.22353 -37.60588 -33.76112 -33.59712 -32.48414 -31.48225 -29.83324 -29.08303 -28.69681 -27.90344 -26.91562 -24.24859 -23.89142 -22.77580 -22.10038 -20.97451 -19.75697 -19.61558 -18.63664 -17.83051 -16.97211 -16.86359 -16.30734 -15.91001 -15.62052 -15.26902 -14.79566 -14.75280 -14.18304 -14.03070 -13.84546 -13.69238 -13.56451 -13.29775 -12.90897 -12.71975 -12.18404 -12.04550 -11.99722 -11.78357 -11.65879 -11.18146 -11.07443 -10.95056 -10.91765 -10.86426 -10.46169 -10.44186 -10.30349 -10.09791 -9.86174 -9.59711 -9.50639 -9.19400 -9.10954 -8.92975 -8.37261 -7.70143 -6.91450 -5.71762 -3.10753 0.46202 0.83229 2.01646 2.21264 3.01766 3.38320 3.42967 3.44347 3.72452 3.85778 4.11280 4.27830 4.39483 4.43304 4.61163 4.86705 4.99539 5.16394 5.17644 5.21618 5.25191 5.38280 5.43255 5.52330 5.60171 5.69987 5.76122 5.80670 5.92571 6.07146 6.10511 6.18126 6.19477 6.21205 6.33610 6.38078 6.48911 6.56689 6.64741 6.66824 6.80929 6.88869 7.01479 7.22042 7.34258 7.40637 7.49993 7.82732 8.16747 8.21152 8.80354 9.09883 9.73223 10.54976 11.37083 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014359 B = 0.003120 C = 0.002707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1949.586078 B = 8973.506487 C =10339.620353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.050 4.050 3 C -0.160 4.160 4 C 0.112 3.888 5 N -0.272 5.272 6 N -0.322 5.322 7 C 0.122 3.878 8 C -0.304 4.304 9 C 0.594 3.406 10 O -0.565 6.565 11 N -0.702 5.702 12 C 0.133 3.867 13 H 0.080 0.920 14 C -0.142 4.142 15 C 0.153 3.847 16 H 0.152 0.848 17 C -0.139 4.139 18 C -0.128 4.128 19 C 0.124 3.876 20 H 0.087 0.913 21 N -0.591 5.591 22 C -0.214 4.214 23 H 0.078 0.922 24 C -0.010 4.010 25 N -0.919 5.919 26 Si 0.914 3.086 27 H -0.286 1.286 28 H -0.291 1.291 29 H -0.287 1.287 30 C 0.162 3.838 31 C -0.106 4.106 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.156 0.844 36 H 0.171 0.829 37 H 0.201 0.799 38 H 0.400 0.600 39 H 0.052 0.948 40 H 0.059 0.941 41 H 0.048 0.952 42 H 0.054 0.946 43 H 0.051 0.949 44 H 0.056 0.944 45 H 0.254 0.746 46 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.776 14.342 -6.521 20.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.055 4.055 3 C -0.182 4.182 4 C -0.014 4.014 5 N -0.036 5.036 6 N -0.143 5.143 7 C -0.058 4.058 8 C -0.318 4.318 9 C 0.382 3.618 10 O -0.446 6.446 11 N -0.350 5.350 12 C 0.026 3.974 13 H 0.098 0.902 14 C -0.182 4.182 15 C 0.047 3.953 16 H 0.169 0.831 17 C -0.178 4.178 18 C -0.168 4.168 19 C 0.016 3.984 20 H 0.105 0.895 21 N -0.311 5.311 22 C -0.342 4.342 23 H 0.095 0.905 24 C -0.205 4.205 25 N -0.567 5.567 26 Si 0.745 3.255 27 H -0.213 1.213 28 H -0.217 1.217 29 H -0.213 1.213 30 C 0.042 3.958 31 C -0.125 4.125 32 H 0.098 0.902 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.173 0.827 36 H 0.188 0.812 37 H 0.217 0.783 38 H 0.235 0.765 39 H 0.071 0.929 40 H 0.078 0.922 41 H 0.067 0.933 42 H 0.073 0.927 43 H 0.070 0.930 44 H 0.075 0.925 45 H 0.065 0.935 46 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -13.526 15.160 -6.327 21.279 hybrid contribution 1.169 -0.302 0.164 1.219 sum -12.356 14.858 -6.164 20.283 Atomic orbital electron populations 1.20824 0.89545 1.03589 1.03152 1.20035 0.97317 0.92159 0.96039 1.20794 0.91835 0.99567 1.05966 1.21515 0.92020 0.88390 0.99520 1.46089 1.06484 1.05270 1.45755 1.77590 0.87883 1.17146 1.31650 1.24188 0.99066 0.90313 0.92258 1.19881 0.91233 0.93934 1.26793 1.16830 0.85007 0.83962 0.75978 1.90707 1.21950 1.79119 1.52813 1.45721 1.08685 1.06783 1.73815 1.22688 0.98706 0.78201 0.97769 0.90189 1.23550 0.99018 1.00337 0.95312 1.23657 0.85732 0.88282 0.97668 0.83109 1.22996 0.98881 1.00144 0.95814 1.22886 0.99038 0.97401 0.97471 1.23178 0.89858 0.93841 0.91550 0.89450 1.46522 1.07612 1.68576 1.08435 1.18954 0.84838 1.32915 0.97536 0.90457 1.24691 0.98234 1.01546 0.96075 1.69457 1.35159 1.48214 1.03878 0.86161 0.84362 0.78074 0.76919 1.21258 1.21675 1.21339 1.19294 0.92979 0.85684 0.97872 1.20759 0.90021 1.00187 1.01571 0.90246 0.90899 0.90590 0.82680 0.81209 0.78256 0.76536 0.92911 0.92222 0.93308 0.92724 0.93022 0.92535 0.93530 0.82184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.68 10.03 36.01 0.36 -0.32 16 2 C -0.05 -0.45 5.89 -104.55 -0.62 -1.07 16 3 C -0.16 -1.18 9.67 -39.95 -0.39 -1.57 16 4 C 0.11 1.04 11.17 -16.68 -0.19 0.85 16 5 N -0.27 -3.65 3.86 -10.55 -0.04 -3.69 16 6 N -0.32 -4.77 12.57 30.75 0.39 -4.38 16 7 C 0.12 1.79 11.44 -17.15 -0.20 1.59 16 8 C -0.30 -4.93 6.17 -104.68 -0.65 -5.58 16 9 C 0.59 10.84 7.78 -12.90 -0.10 10.74 16 10 O -0.56 -11.51 15.35 5.17 0.08 -11.43 16 11 N -0.70 -12.62 5.08 -52.40 -0.27 -12.88 16 12 C 0.13 2.53 2.82 -65.09 -0.18 2.34 16 13 H 0.08 1.53 7.23 -51.93 -0.38 1.15 16 14 C -0.14 -2.95 6.26 -23.89 -0.15 -3.10 16 15 C 0.15 3.50 4.69 -63.05 -0.30 3.20 16 16 H 0.15 3.96 5.52 -51.93 -0.29 3.68 16 17 C -0.14 -2.76 6.42 -24.49 -0.16 -2.92 16 18 C -0.13 -2.34 6.44 -24.23 -0.16 -2.50 16 19 C 0.12 2.43 5.06 -62.80 -0.32 2.12 16 20 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 21 N -0.59 -13.94 2.99 -146.08 -0.44 -14.37 16 22 C -0.21 -5.57 10.59 -15.06 -0.16 -5.73 16 23 H 0.08 1.92 7.83 -52.49 -0.41 1.51 16 24 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 25 N -0.92 -25.78 10.47 55.49 0.58 -25.20 16 26 Si 0.91 21.42 29.55 -169.99 -5.02 16.39 16 27 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 28 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 29 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 30 C 0.16 2.40 6.76 -84.07 -0.57 1.83 16 31 C -0.11 -1.33 9.38 -39.53 -0.37 -1.70 16 32 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.29 8.10 -51.93 -0.42 -0.13 16 34 H 0.08 0.45 8.09 -51.93 -0.42 0.03 16 35 H 0.16 0.57 8.06 -52.48 -0.42 0.15 16 36 H 0.17 1.04 8.06 -52.48 -0.42 0.62 16 37 H 0.20 2.44 7.46 -52.49 -0.39 2.05 16 38 H 0.40 6.89 7.58 -40.82 -0.31 6.58 16 39 H 0.05 1.03 7.80 -51.93 -0.41 0.62 16 40 H 0.06 1.35 8.00 -51.94 -0.42 0.94 16 41 H 0.05 0.87 7.80 -51.93 -0.41 0.46 16 42 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 43 H 0.05 0.83 7.82 -51.93 -0.41 0.43 16 44 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 46 H 0.16 2.12 7.12 -52.48 -0.37 1.75 16 LS Contribution 374.59 15.07 5.65 5.65 Total: -1.00 -32.49 374.59 -9.59 -42.08 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: -6.29 Total: 9.99 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: -4.22 Total: -2.14 kcal Atomic # 7 Polarization: -60.76 SS G_CDS: 0.22 Total: -60.53 kcal Atomic # 8 Polarization: -11.51 SS G_CDS: 0.08 Total: -11.43 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.49 -9.59 -42.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097265136.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.892 kcal (2) G-P(sol) polarization free energy of solvation -32.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds